Literature DB >> 21580784

6,8-Diiodo-5,7-dimeth-oxy-4-methyl-coumarin.

P S Pereira Silva, Mehtab Parveen, Zakia Khanam, Akhtar Ali, M Ramos Silva.   

Abstract

In the title compound, C(12)H(10)I(2)O(4), the meth-oxy groups are twisted considerably with respect to the plane of the aromatic ring [CH(3)-O-C-C torsion angles = -85.9 (3) and -92.8 (3)°]. In the crystal, mol-ecules are linked by weak C-H⋯O hydrogen bonds and O⋯I contacts [3.194 (2) Å].

Entities:  

Year:  2010        PMID: 21580784      PMCID: PMC2983982          DOI: 10.1107/S1600536810011360

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the medicinal applications of coumarin derivatives, see: Lin et al. (2006 ▶); Massimo et al. (2003 ▶); Tyagi et al. (2003 ▶); Nawrot-Modranka et al. (2006 ▶); Sardari et al. (1999 ▶); Huang et al. (2005 ▶); Elinos-Baez et al. (2005 ▶). For the synthesis of the title compound, see: Ali & Ilyas (1986 ▶).

Experimental

Crystal data

C12H10I2O4 M = 472.00 Monoclinic, a = 10.8681 (2) Å b = 9.1179 (2) Å c = 17.2315 (3) Å β = 125.395 (1)° V = 1391.95 (5) Å3 Z = 4 Mo Kα radiation μ = 4.52 mm−1 T = 293 K 0.30 × 0.24 × 0.16 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2003 ▶) T min = 0.396, T max = 0.485 27048 measured reflections 3928 independent reflections 3453 reflections with I > 2σ(I) R int = 0.022

Refinement

R[F 2 > 2σ(F 2)] = 0.023 wR(F 2) = 0.055 S = 1.06 3928 reflections 166 parameters H-atom parameters constrained Δρmax = 0.71 e Å−3 Δρmin = −0.96 e Å−3 Data collection: APEX2 (Bruker, 2003 ▶); cell refinement: SAINT (Bruker, 2003 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810011360/bt5225sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810011360/bt5225Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H10I2O4F(000) = 880
Mr = 472.00Dx = 2.252 Mg m3
Monoclinic, P21/cMelting point: 490 K
Hall symbol: -P 2ybcMo Kα radiation, λ = 0.71073 Å
a = 10.8681 (2) ÅCell parameters from 7934 reflections
b = 9.1179 (2) Åθ = 2.4–29.5°
c = 17.2315 (3) ŵ = 4.52 mm1
β = 125.395 (1)°T = 293 K
V = 1391.95 (5) Å3Irregular block, pale yellow
Z = 40.30 × 0.24 × 0.16 mm
Bruker APEXII CCD area-detector diffractometer3928 independent reflections
Radiation source: fine-focus sealed tube3453 reflections with I > 2σ(I)
graphiteRint = 0.022
φ and ω scansθmax = 29.7°, θmin = 2.3°
Absorption correction: multi-scan (SADABS; Sheldrick, 2003)h = −14→15
Tmin = 0.396, Tmax = 0.485k = −12→12
27048 measured reflectionsl = −24→23
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.023Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.055H-atom parameters constrained
S = 1.06w = 1/[σ2(Fo2) + (0.0226P)2 + 1.1738P] where P = (Fo2 + 2Fc2)/3
3928 reflections(Δ/σ)max = 0.001
166 parametersΔρmax = 0.71 e Å3
0 restraintsΔρmin = −0.96 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
I10.51053 (2)0.82363 (2)0.156895 (15)0.05749 (7)
I20.11277 (2)0.593603 (19)0.266073 (13)0.04546 (6)
O10.06827 (19)0.35475 (17)0.12276 (12)0.0353 (3)
O2−0.0507 (2)0.1432 (2)0.07590 (17)0.0548 (5)
O30.39384 (18)0.53122 (19)0.03873 (12)0.0383 (4)
O40.3379 (2)0.79647 (18)0.25451 (12)0.0434 (4)
C80.1966 (3)0.5766 (2)0.18397 (16)0.0317 (4)
C70.2959 (3)0.6823 (2)0.19268 (16)0.0337 (5)
C60.3586 (3)0.6668 (2)0.14197 (17)0.0352 (5)
C50.3273 (2)0.5453 (3)0.08510 (15)0.0318 (4)
C100.2315 (2)0.4324 (2)0.07795 (15)0.0297 (4)
C90.1647 (2)0.4549 (2)0.12598 (15)0.0294 (4)
C40.2056 (3)0.2920 (2)0.03026 (16)0.0352 (5)
C30.1095 (3)0.1972 (3)0.02911 (18)0.0395 (5)
H30.09050.1087−0.00280.047*
C20.0351 (3)0.2248 (3)0.07400 (18)0.0379 (5)
C130.2462 (4)0.9256 (3)0.2126 (2)0.0621 (8)
H13A0.23930.95130.15620.093*
H13B0.29111.00510.25730.093*
H13C0.14700.90660.19640.093*
C120.3139 (3)0.6047 (3)−0.05204 (19)0.0497 (6)
H12A0.21530.5623−0.09360.075*
H12B0.36870.5937−0.07970.075*
H12C0.30440.7070−0.04330.075*
C110.2873 (4)0.2436 (3)−0.0117 (2)0.0582 (8)
H11A0.26070.1440−0.03310.087*
H11B0.39420.25020.03570.087*
H11C0.25920.3057−0.06460.087*
U11U22U33U12U13U23
I10.05881 (12)0.05243 (11)0.06135 (13)−0.02587 (9)0.03486 (10)−0.01030 (8)
I20.05746 (11)0.04523 (10)0.04782 (10)−0.00537 (7)0.03859 (9)−0.01056 (7)
O10.0400 (9)0.0303 (7)0.0438 (9)−0.0055 (6)0.0290 (8)−0.0069 (7)
O20.0650 (13)0.0391 (9)0.0823 (15)−0.0165 (9)0.0552 (12)−0.0145 (10)
O30.0370 (8)0.0458 (9)0.0384 (9)0.0023 (7)0.0255 (8)0.0035 (7)
O40.0572 (11)0.0325 (8)0.0355 (9)−0.0062 (8)0.0239 (8)−0.0092 (7)
C80.0355 (11)0.0304 (10)0.0307 (10)0.0031 (8)0.0200 (9)−0.0015 (8)
C70.0380 (12)0.0277 (10)0.0286 (10)−0.0006 (8)0.0154 (9)−0.0023 (8)
C60.0355 (11)0.0325 (11)0.0330 (11)−0.0057 (9)0.0172 (10)0.0007 (9)
C50.0299 (10)0.0357 (11)0.0291 (10)0.0019 (8)0.0167 (9)0.0032 (8)
C100.0307 (10)0.0294 (10)0.0271 (10)0.0008 (8)0.0157 (9)−0.0008 (8)
C90.0293 (10)0.0280 (9)0.0296 (10)0.0003 (8)0.0162 (9)−0.0005 (8)
C40.0400 (12)0.0334 (11)0.0338 (11)0.0017 (9)0.0224 (10)−0.0036 (9)
C30.0477 (14)0.0299 (11)0.0453 (13)−0.0041 (10)0.0294 (12)−0.0077 (9)
C20.0409 (12)0.0290 (10)0.0453 (13)−0.0031 (9)0.0257 (11)−0.0049 (9)
C130.093 (2)0.0340 (13)0.0625 (19)0.0072 (15)0.0471 (19)−0.0025 (12)
C120.0480 (15)0.0696 (18)0.0379 (13)0.0039 (13)0.0285 (12)0.0077 (12)
C110.078 (2)0.0493 (16)0.077 (2)−0.0089 (15)0.0618 (19)−0.0206 (15)
I1—C62.084 (2)C10—C41.458 (3)
I2—C82.085 (2)C4—C31.347 (3)
O1—C91.367 (3)C4—C111.500 (3)
O1—C21.375 (3)C3—C21.428 (3)
O2—C21.208 (3)C3—H30.9300
O3—C51.359 (3)C13—H13A0.9600
O3—C121.441 (3)C13—H13B0.9600
O4—C71.365 (3)C13—H13C0.9600
O4—C131.438 (3)C12—H12A0.9600
C8—C71.389 (3)C12—H12B0.9600
C8—C91.396 (3)C12—H12C0.9600
C7—C61.392 (3)C11—H11A0.9600
C6—C51.385 (3)C11—H11B0.9600
C5—C101.418 (3)C11—H11C0.9600
C10—C91.397 (3)
C9—O1—C2121.60 (18)C4—C3—C2123.8 (2)
C5—O3—C12113.74 (18)C4—C3—H3118.1
C7—O4—C13114.3 (2)C2—C3—H3118.1
C7—C8—C9118.9 (2)O2—C2—O1116.6 (2)
C7—C8—I2119.53 (16)O2—C2—C3126.5 (2)
C9—C8—I2121.34 (16)O1—C2—C3116.9 (2)
O4—C7—C8120.0 (2)O4—C13—H13A109.5
O4—C7—C6120.2 (2)O4—C13—H13B109.5
C8—C7—C6119.6 (2)H13A—C13—H13B109.5
C5—C6—C7121.1 (2)O4—C13—H13C109.5
C5—C6—I1119.26 (17)H13A—C13—H13C109.5
C7—C6—I1119.58 (16)H13B—C13—H13C109.5
O3—C5—C6119.7 (2)O3—C12—H12A109.5
O3—C5—C10119.6 (2)O3—C12—H12B109.5
C6—C5—C10120.6 (2)H12A—C12—H12B109.5
C9—C10—C5116.74 (19)O3—C12—H12C109.5
C9—C10—C4117.8 (2)H12A—C12—H12C109.5
C5—C10—C4125.4 (2)H12B—C12—H12C109.5
O1—C9—C10121.85 (19)C4—C11—H11A109.5
O1—C9—C8115.25 (19)C4—C11—H11B109.5
C10—C9—C8122.8 (2)H11A—C11—H11B109.5
C3—C4—C10117.8 (2)C4—C11—H11C109.5
C3—C4—C11118.3 (2)H11A—C11—H11C109.5
C10—C4—C11123.7 (2)H11B—C11—H11C109.5
C13—O4—C7—C8−92.8 (3)C2—O1—C9—C101.7 (3)
C13—O4—C7—C690.7 (3)C2—O1—C9—C8−175.3 (2)
C9—C8—C7—O4−175.0 (2)C5—C10—C9—O1178.85 (19)
I2—C8—C7—O4−0.1 (3)C4—C10—C9—O1−5.2 (3)
C9—C8—C7—C61.5 (3)C5—C10—C9—C8−4.3 (3)
I2—C8—C7—C6176.40 (17)C4—C10—C9—C8171.7 (2)
O4—C7—C6—C5174.5 (2)C7—C8—C9—O1178.8 (2)
C8—C7—C6—C5−2.0 (3)I2—C8—C9—O14.0 (3)
O4—C7—C6—I1−2.4 (3)C7—C8—C9—C101.7 (3)
C8—C7—C6—I1−178.96 (17)I2—C8—C9—C10−173.05 (16)
C12—O3—C5—C6−85.9 (3)C9—C10—C4—C35.1 (3)
C12—O3—C5—C1096.7 (3)C5—C10—C4—C3−179.3 (2)
C7—C6—C5—O3−178.0 (2)C9—C10—C4—C11−170.8 (3)
I1—C6—C5—O3−1.1 (3)C5—C10—C4—C114.8 (4)
C7—C6—C5—C10−0.7 (3)C10—C4—C3—C2−1.8 (4)
I1—C6—C5—C10176.25 (16)C11—C4—C3—C2174.3 (3)
O3—C5—C10—C9−178.92 (19)C9—O1—C2—O2179.6 (2)
C6—C5—C10—C93.7 (3)C9—O1—C2—C31.7 (3)
O3—C5—C10—C45.4 (3)C4—C3—C2—O2−179.2 (3)
C6—C5—C10—C4−171.9 (2)C4—C3—C2—O1−1.7 (4)
D—H···AD—HH···AD···AD—H···A
C3—H3···O2i0.932.533.460 (3)175
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C3—H3⋯O2i0.932.533.460 (3)175

Symmetry code: (i) .

  8 in total

1.  Effects of coumarin and 7OH-coumarin on bcl-2 and Bax expression in two human lung cancer cell lines in vitro.

Authors:  C M Elinos-Báez; F León; E Santos
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2.  A short history of SHELX.

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3.  Synthesis and antifungal activity of coumarins and angular furanocoumarins.

Authors:  S Sardari; Y Mori; K Horita; R G Micetich; S Nishibe; M Daneshtalab
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4.  Synthesis of novel amino and acetyl amino-4-methylcoumarins and evaluation of their antioxidant activity.

Authors:  Yogesh K Tyagi; Ajit Kumar; Hanumantharao G Raj; Parag Vohra; Garima Gupta; Ranju Kumari; Pankaj Kumar; Rajinder K Gupta
Journal:  Eur J Med Chem       Date:  2005-04       Impact factor: 6.514

5.  Mechanism of action and resistant profile of anti-HIV-1 coumarin derivatives.

Authors:  Li Huang; Xiong Yuan; Donglei Yu; K H Lee; Chin Ho Chen
Journal:  Virology       Date:  2005-02-20       Impact factor: 3.616

6.  In vivo antitumor, in vitro antibacterial activity and alkylating properties of phosphorohydrazine derivatives of coumarin and chromone.

Authors:  Jolanta Nawrot-Modranka; Ewa Nawrot; Julita Graczyk
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7.  6-Acyl-4-aryl/alkyl-5,7-dihydroxycoumarins as anti-inflammatory agents.

Authors:  Chun-Mao Lin; Sheng-Tung Huang; Fu-Wei Lee; Hsien-Saw Kuo; Mei-Hsiang Lin
Journal:  Bioorg Med Chem       Date:  2006-03-15       Impact factor: 3.641

8.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
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  8 in total
  2 in total

1.  8-Iodo-5,7-dimeth-oxy-4-methyl-2H-chromen-2-one.

Authors:  P S Pereira Silva; Mehtab Parveen; Akhtar Ali; M Ramos Silva
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-03-05

2.  rac-4a,10b-cis,10b,5c-trans-5-(7-Methyl-2-oxo-2H-chromen-4-yl)-3,4,4a,5,6,10b-hexa-hydro-2H-pyrano[3,2-c]quinoline.

Authors:  M Kayalvizhi; G Vasuki; Shriniwas D Samant; Kailas K Sanap
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-01-23
  2 in total

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