Literature DB >> 21580766

4-[(2,5-Dimethyl-1,3-thia-zol-4-yl)meth-yl]-4-hydr-oxy-2-methyl-isoquinoline-1,3(2H,4H)-dione.

Hoong-Kun Fun, Jia Hao Goh, Haitao Yu, Yan Zhang.   

Abstract

In the title isoquinoline-dione compound, C(16)H(16)N(2)O(3)S, the piperidine ring in the tetra-hydro-isoquinoline ring system adopts a half-boat conformation. The essentially planar thia-zole ring [maximum deviation = 0.007 (2) Å] makes a dihedral angle of 34.49 (7)° with the mean plane through the tetra-hydro-isoquinoline ring system. In the crystal structure, two neighbouring mol-ecules are linked via pairs of O-H⋯N and C-H⋯O hydrogen bonds into inversion-related dimers incorporating R(2) (2)(9) hydrogen-bond ring motifs. These dimers are further linked by weak inter-molecular C-H⋯π inter-actions.

Entities:  

Year:  2010        PMID: 21580766      PMCID: PMC2983771          DOI: 10.1107/S1600536810011141

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to and applications of isoquinoline­dione derivatives, see: Griesbeck et al. (2003 ▶); Suau & Villatoro (1994 ▶); Zhang et al. (2000 ▶, 2004 ▶). For ring conformations, see: Cremer & Pople (1975 ▶). For graph-set descriptions of hydrogen-bond ring motifs, see: Bernstein et al. (1995 ▶). For related structures, see: Fun et al. (2010 ▶); Wang et al. (2000 ▶). For the stability of the temperature controller used for the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C16H16N2O3S M = 316.37 Monoclinic, a = 8.5793 (2) Å b = 10.4438 (2) Å c = 17.5496 (3) Å β = 114.304 (1)° V = 1433.09 (5) Å3 Z = 4 Cu Kα radiation μ = 2.14 mm−1 T = 100 K 0.32 × 0.19 × 0.12 mm

Data collection

Bruker SMART APEX DUO CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.546, T max = 0.782 22926 measured reflections 2343 independent reflections 2311 reflections with I > 2σ(I) R int = 0.021

Refinement

R[F 2 > 2σ(F 2)] = 0.041 wR(F 2) = 0.135 S = 1.33 2343 reflections 264 parameters All H-atom parameters refined Δρmax = 0.87 e Å−3 Δρmin = −1.01 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810011141/sj2758sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810011141/sj2758Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H16N2O3SF(000) = 664
Mr = 316.37Dx = 1.466 Mg m3
Monoclinic, P21/cCu Kα radiation, λ = 1.54178 Å
Hall symbol: -P 2ybcCell parameters from 9047 reflections
a = 8.5793 (2) Åθ = 5.1–67.1°
b = 10.4438 (2) ŵ = 2.14 mm1
c = 17.5496 (3) ÅT = 100 K
β = 114.304 (1)°Block, colourless
V = 1433.09 (5) Å30.32 × 0.19 × 0.12 mm
Z = 4
Bruker SMART APEX DUO CCD area-detector diffractometer2343 independent reflections
Radiation source: fine-focus sealed tube2311 reflections with I > 2σ(I)
noneRint = 0.021
φ and ω scansθmax = 65.0°, θmin = 5.1°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −10→8
Tmin = 0.546, Tmax = 0.782k = −11→12
22926 measured reflectionsl = −17→20
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.041All H-atom parameters refined
wR(F2) = 0.135w = 1/[σ2(Fo2) + (0.0848P)2 + 0.3552P] where P = (Fo2 + 2Fc2)/3
S = 1.33(Δ/σ)max = 0.001
2343 reflectionsΔρmax = 0.87 e Å3
264 parametersΔρmin = −1.01 e Å3
0 restraintsExtinction correction: SHELXTL (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.034 (2)
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1)K.
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S11.09845 (5)0.83482 (4)1.10440 (3)0.0194 (3)
O10.38500 (16)0.80117 (12)1.02541 (8)0.0215 (4)
O20.82233 (18)0.52224 (13)1.07705 (8)0.0275 (4)
O30.33049 (17)0.82715 (12)0.86199 (8)0.0201 (4)
N10.6048 (2)0.66140 (13)1.05324 (10)0.0176 (4)
N20.80660 (19)0.91667 (14)1.08986 (9)0.0182 (4)
C10.4850 (2)0.74898 (16)1.00286 (11)0.0174 (4)
C20.7103 (2)0.58819 (16)1.02692 (11)0.0190 (4)
C30.6699 (2)0.58984 (16)0.93626 (11)0.0178 (4)
C40.7471 (2)0.49838 (17)0.90499 (12)0.0205 (4)
C50.7076 (2)0.49498 (17)0.82010 (12)0.0229 (5)
C60.5912 (3)0.58198 (18)0.76658 (12)0.0220 (4)
C70.5162 (2)0.67391 (17)0.79782 (12)0.0200 (4)
C80.5556 (2)0.67879 (16)0.88301 (12)0.0172 (4)
C90.4934 (2)0.78679 (17)0.92028 (11)0.0171 (4)
C100.6204 (2)0.90246 (16)0.93867 (11)0.0164 (4)
C110.7918 (2)0.88586 (16)1.00992 (11)0.0166 (4)
C120.9358 (2)0.84040 (15)1.00461 (12)0.0177 (4)
C130.9603 (2)0.89292 (17)1.14552 (11)0.0195 (4)
C140.6343 (3)0.65094 (18)1.14136 (12)0.0208 (5)
C150.9659 (3)0.8009 (2)0.92990 (12)0.0209 (4)
C161.0194 (3)0.9151 (2)1.23738 (12)0.0266 (5)
H4A0.824 (3)0.439 (2)0.9426 (14)0.023 (5)*
H5A0.762 (3)0.433 (2)0.7991 (15)0.032 (6)*
H6A0.563 (3)0.581 (2)0.7073 (15)0.026 (6)*
H7A0.439 (3)0.736 (2)0.7631 (15)0.027 (6)*
H10A0.564 (3)0.975 (2)0.9491 (13)0.018 (5)*
H10B0.633 (3)0.9172 (19)0.8877 (14)0.016 (5)*
H14A0.541 (4)0.692 (3)1.1484 (17)0.040 (7)*
H14B0.634 (3)0.561 (2)1.1555 (14)0.025 (5)*
H14C0.729 (4)0.693 (3)1.1756 (17)0.033 (6)*
H15A0.988 (3)0.711 (3)0.9309 (17)0.041 (7)*
H15B1.058 (3)0.850 (2)0.9259 (16)0.033 (6)*
H15C0.869 (4)0.820 (3)0.8790 (19)0.043 (7)*
H16A1.029 (4)1.003 (3)1.2454 (19)0.056 (9)*
H16B0.939 (4)0.885 (3)1.2568 (18)0.046 (7)*
H16C1.133 (4)0.878 (3)1.270 (2)0.050 (8)*
H1O30.297 (4)0.889 (3)0.8823 (19)0.050 (8)*
U11U22U33U12U13U23
S10.0153 (4)0.0216 (4)0.0198 (4)0.00071 (15)0.0057 (2)−0.00131 (15)
O10.0209 (7)0.0208 (7)0.0262 (7)0.0007 (5)0.0131 (6)−0.0012 (5)
O20.0293 (8)0.0307 (8)0.0218 (7)0.0109 (6)0.0097 (6)0.0053 (6)
O30.0146 (7)0.0226 (7)0.0198 (7)0.0032 (5)0.0037 (6)0.0003 (5)
N10.0189 (9)0.0167 (8)0.0171 (8)−0.0009 (6)0.0075 (7)−0.0003 (5)
N20.0184 (9)0.0172 (8)0.0187 (8)−0.0018 (6)0.0072 (6)−0.0016 (6)
C10.0160 (9)0.0146 (8)0.0206 (9)−0.0036 (7)0.0067 (7)−0.0025 (7)
C20.0188 (10)0.0159 (9)0.0223 (10)−0.0005 (7)0.0085 (8)0.0004 (7)
C30.0173 (10)0.0161 (9)0.0209 (9)−0.0035 (7)0.0086 (7)−0.0013 (7)
C40.0216 (10)0.0171 (9)0.0247 (9)−0.0003 (7)0.0112 (8)0.0009 (7)
C50.0278 (11)0.0181 (9)0.0280 (10)−0.0042 (8)0.0167 (8)−0.0054 (7)
C60.0273 (11)0.0214 (9)0.0197 (9)−0.0079 (7)0.0122 (8)−0.0039 (7)
C70.0202 (11)0.0187 (9)0.0201 (10)−0.0032 (7)0.0073 (8)0.0005 (7)
C80.0147 (10)0.0166 (9)0.0203 (9)−0.0043 (6)0.0073 (7)−0.0020 (7)
C90.0133 (9)0.0182 (9)0.0176 (9)−0.0002 (7)0.0043 (7)0.0000 (7)
C100.0173 (10)0.0144 (9)0.0175 (9)0.0001 (7)0.0071 (8)0.0007 (7)
C110.0179 (10)0.0130 (9)0.0188 (9)−0.0018 (6)0.0075 (7)0.0001 (6)
C120.0169 (10)0.0145 (9)0.0206 (10)−0.0027 (6)0.0066 (8)−0.0002 (6)
C130.0180 (10)0.0185 (9)0.0221 (9)−0.0017 (7)0.0083 (7)−0.0017 (7)
C140.0256 (12)0.0205 (10)0.0173 (10)−0.0019 (8)0.0098 (9)0.0001 (7)
C150.0187 (10)0.0234 (10)0.0218 (10)−0.0010 (8)0.0095 (8)−0.0012 (8)
C160.0220 (11)0.0356 (12)0.0202 (10)0.0005 (9)0.0065 (9)−0.0045 (8)
S1—C131.7317 (18)C6—H6A0.97 (2)
S1—C121.7337 (19)C7—C81.391 (3)
O1—C11.212 (2)C7—H7A0.95 (3)
O2—C21.215 (2)C8—C91.508 (2)
O3—C91.414 (2)C9—C101.569 (2)
O3—H1O30.84 (3)C10—C111.497 (2)
N1—C11.388 (2)C10—H10A0.95 (2)
N1—C21.400 (2)C10—H10B0.96 (2)
N1—C141.465 (2)C11—C121.363 (3)
N2—C131.301 (2)C12—C151.495 (3)
N2—C111.393 (2)C13—C161.495 (3)
C1—C91.532 (2)C14—H14A0.96 (3)
C2—C31.482 (3)C14—H14B0.97 (3)
C3—C81.394 (3)C14—H14C0.90 (3)
C3—C41.397 (3)C15—H15A0.95 (3)
C4—C51.386 (3)C15—H15B0.97 (3)
C4—H4A0.95 (2)C15—H15C0.96 (3)
C5—C61.390 (3)C16—H16A0.93 (3)
C5—H5A0.96 (3)C16—H16B0.94 (3)
C6—C71.388 (3)C16—H16C0.98 (3)
C13—S1—C1290.28 (9)C1—C9—C10107.64 (14)
C9—O3—H1O3109 (2)C11—C10—C9116.27 (14)
C1—N1—C2124.01 (15)C11—C10—H10A109.3 (13)
C1—N1—C14118.86 (15)C9—C10—H10A106.8 (13)
C2—N1—C14116.94 (15)C11—C10—H10B110.6 (13)
C13—N2—C11110.88 (15)C9—C10—H10B105.4 (13)
O1—C1—N1121.76 (16)H10A—C10—H10B108.0 (17)
O1—C1—C9120.54 (16)C12—C11—N2116.10 (16)
N1—C1—C9117.49 (15)C12—C11—C10126.12 (16)
O2—C2—N1119.78 (16)N2—C11—C10117.76 (15)
O2—C2—C3123.34 (16)C11—C12—C15130.18 (18)
N1—C2—C3116.76 (15)C11—C12—S1108.55 (14)
C8—C3—C4120.56 (17)C15—C12—S1121.27 (14)
C8—C3—C2121.10 (16)N2—C13—C16124.69 (17)
C4—C3—C2118.33 (16)N2—C13—S1114.19 (13)
C5—C4—C3119.64 (17)C16—C13—S1121.11 (14)
C5—C4—H4A121.7 (13)N1—C14—H14A108.1 (17)
C3—C4—H4A118.7 (13)N1—C14—H14B108.9 (13)
C4—C5—C6119.94 (17)H14A—C14—H14B108 (2)
C4—C5—H5A119.3 (15)N1—C14—H14C112.7 (16)
C6—C5—H5A120.7 (15)H14A—C14—H14C105 (2)
C7—C6—C5120.40 (17)H14B—C14—H14C113 (2)
C7—C6—H6A118.9 (13)C12—C15—H15A111.0 (16)
C5—C6—H6A120.7 (13)C12—C15—H15B111.1 (15)
C6—C7—C8120.17 (17)H15A—C15—H15B111 (2)
C6—C7—H7A122.3 (14)C12—C15—H15C111.2 (17)
C8—C7—H7A117.5 (14)H15A—C15—H15C108 (2)
C7—C8—C3119.26 (16)H15B—C15—H15C104 (2)
C7—C8—C9121.39 (16)C13—C16—H16A106.6 (19)
C3—C8—C9118.99 (16)C13—C16—H16B111.3 (18)
O3—C9—C8109.28 (15)H16A—C16—H16B108 (3)
O3—C9—C1110.12 (14)C13—C16—H16C112.4 (18)
C8—C9—C1112.37 (14)H16A—C16—H16C107 (3)
O3—C9—C10108.37 (14)H16B—C16—H16C111 (3)
C8—C9—C10108.97 (14)
C2—N1—C1—O1172.72 (16)C3—C8—C9—C1−30.6 (2)
C14—N1—C1—O1−12.4 (2)C7—C8—C9—C10−84.4 (2)
C2—N1—C1—C9−12.5 (2)C3—C8—C9—C1088.64 (19)
C14—N1—C1—C9162.30 (16)O1—C1—C9—O3−30.9 (2)
C1—N1—C2—O2173.39 (17)N1—C1—C9—O3154.29 (15)
C14—N1—C2—O2−1.5 (2)O1—C1—C9—C8−152.96 (16)
C1—N1—C2—C3−10.5 (2)N1—C1—C9—C832.2 (2)
C14—N1—C2—C3174.59 (15)O1—C1—C9—C1087.05 (19)
O2—C2—C3—C8−171.67 (18)N1—C1—C9—C10−87.76 (18)
N1—C2—C3—C812.4 (2)O3—C9—C10—C11169.71 (14)
O2—C2—C3—C49.4 (3)C8—C9—C10—C11−71.47 (19)
N1—C2—C3—C4−166.57 (16)C1—C9—C10—C1150.6 (2)
C8—C3—C4—C5−0.9 (3)C13—N2—C11—C12−1.1 (2)
C2—C3—C4—C5177.98 (16)C13—N2—C11—C10177.57 (15)
C3—C4—C5—C6−0.3 (3)C9—C10—C11—C1292.3 (2)
C4—C5—C6—C71.1 (3)C9—C10—C11—N2−86.14 (19)
C5—C6—C7—C8−0.7 (3)N2—C11—C12—C15−178.82 (17)
C6—C7—C8—C3−0.5 (3)C10—C11—C12—C152.7 (3)
C6—C7—C8—C9172.49 (17)N2—C11—C12—S10.32 (19)
C4—C3—C8—C71.4 (3)C10—C11—C12—S1−178.19 (14)
C2—C3—C8—C7−177.54 (16)C13—S1—C12—C110.35 (13)
C4—C3—C8—C9−171.82 (16)C13—S1—C12—C15179.58 (15)
C2—C3—C8—C99.3 (2)C11—N2—C13—C16179.99 (17)
C7—C8—C9—O333.9 (2)C11—N2—C13—S11.32 (19)
C3—C8—C9—O3−153.11 (15)C12—S1—C13—N2−1.00 (14)
C7—C8—C9—C1156.42 (16)C12—S1—C13—C16−179.72 (16)
Cg1 and Cg2 are the centroids of the C3–C8 benzene ring and the C11/C12/S1/C13/N2 thiazol ring, respectively.
D—H···AD—HH···AD···AD—H···A
O3—H1O3···N2i0.84 (3)2.35 (3)3.174 (2)167 (3)
C10—H10A···O1i0.96 (2)2.39 (2)3.163 (2)138 (2)
C14—H14B···Cg1ii0.97 (3)2.71 (3)3.403 (2)129 (2)
C15—H15B···Cg2iii0.97 (3)2.89 (2)3.537 (2)125.4 (18)
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 and Cg2 are the centroids of the C3–C8 benzene ring and the C11/C12/S1/C13/N2 thia­zol ring, respectively.

D—H⋯AD—HH⋯ADAD—H⋯A
O3—H1O3⋯N2i0.84 (3)2.35 (3)3.174 (2)167 (3)
C10—H10A⋯O1i0.96 (2)2.39 (2)3.163 (2)138 (2)
C14—H14BCg1ii0.97 (3)2.71 (3)3.403 (2)129 (2)
C15—H15BCg2iii0.97 (3)2.89 (2)3.537 (2)125.4 (18)

Symmetry codes: (i) ; (ii) ; (iii) .

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-03-13

5.  4-[(2,4-Dimethyl-1,3-oxazol-5-yl)meth-yl]-4-hydr-oxy-2-methyl-isoquinoline-1,3(2H,4H)-dione.

Authors:  Hoong-Kun Fun; Jia Hao Goh; Haitao Yu; Yan Zhang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-03-03

6.  4-[(2,4-Dimethyl-thia-zol-5-yl)meth-yl]-4-hydr-oxy-2-methyl-isoquinoline-1,3(2H,4H)-dione.

Authors:  Hoong-Kun Fun; Jia Hao Goh; Haitao Yu; Yan Zhang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-03-27

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