Literature DB >> 21580716

(6S)-2-tert-Butyl-6-[(4S,5R)-3,4-dimethyl-5-phenyloxazolidin-2-yl]phenol.

Alexander E Anderson1, Kate L Edler, Raleigh W Parrott, Shawn R Hitchcock, Gregory M Ferrence.   

Abstract

The title compound, C(21)H(27)NO(2), exhibits hydrogen bonding between the phenolic H atom and the heterocyclic N atom. The absolute configuration of the mol-ecule is known from the synthetic procedure.

Entities:  

Year:  2010        PMID: 21580716      PMCID: PMC2983802          DOI: 10.1107/S1600536810009190

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures and background to the use of chiral oxazolidines as templates in asymmetric synthesis, see: Agami & Couty (2004 ▶); Campbell et al. (2010 ▶); Koyanagi et al. (2010 ▶); Parrott & Hitchcock (2007 ▶); Parrott et al. (2008 ▶). The synthesis of the title compound is described by Parrott & Hitchcock (2007 ▶). The absolute configuration assignment is based on both optical activity measurements and on the known stereochemistry of the commercially obtained optically pure ephedrine from which it was prepared (Parrott & Hitchcock, 2007 ▶). For geometry checks using Mogul, see: Bruno et al. (2004 ▶). For ring puckering analysis, see: Boeyens (1978 ▶); Cremer & Pople (1975 ▶); Spek (2009 ▶). For a description of the Jmol toolkit for the preparation of enhanced figures, see: McMahon & Hanson (2008 ▶).

Experimental

Crystal data

C21H27NO2 M = 325.44 Monoclinic, a = 8.3288 (8) Å b = 9.8657 (9) Å c = 11.4325 (11) Å β = 91.667 (1)° V = 939.00 (15) Å3 Z = 2 Mo Kα radiation μ = 0.07 mm−1 T = 140 K 0.55 × 0.27 × 0.27 mm

Data collection

Bruker SMART APEX CCD diffractometer Absorption correction: multi-scan (APEX2; Bruker, 2008 ▶) T min = 0.687, T max = 0.746 9040 measured reflections 2284 independent reflections 2191 reflections with I > 2σ(I) R int = 0.017

Refinement

R[F 2 > 2σ(F 2)] = 0.028 wR(F 2) = 0.074 S = 1.04 2284 reflections 221 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.21 e Å−3 Δρmin = −0.14 e Å−3 Data collection: APEX2 (Bruker, 2008 ▶); cell refinement: SAINT (Bruker, 2008 ▶); data reduction: SAINT; program(s) used to solve structure: SIR2004 (Burla et al., 2005 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶), publCIF (McMahon & Westrip, 2008 ▶) and Mercury (Macrae et al., 2008 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810009190/zl2269sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810009190/zl2269Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report Enhanced figure: interactive version of Fig. 2
C21H27NO2F(000) = 352
Mr = 325.44Dx = 1.151 Mg m3
Monoclinic, P21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ybCell parameters from 5731 reflections
a = 8.3288 (8) Åθ = 2.5–3.4°
b = 9.8657 (9) ŵ = 0.07 mm1
c = 11.4325 (11) ÅT = 140 K
β = 91.667 (1)°Rod, colourless
V = 939.00 (15) Å30.55 × 0.27 × 0.27 mm
Z = 2
Bruker SMART APEX CCD diffractometer2191 reflections with I > 2σ(I)
graphiteRint = 0.017
ω scansθmax = 27.5°, θmin = 1.8°
Absorption correction: multi-scan (APEX2; Bruker, 2008)h = −10→10
Tmin = 0.687, Tmax = 0.746k = −12→12
9040 measured reflectionsl = −14→14
2284 independent reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.028Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.074H atoms treated by a mixture of independent and constrained refinement
S = 1.04w = 1/[σ2(Fo2) + (0.0485P)2 + 0.090P] where P = (Fo2 + 2Fc2)/3
2284 reflections(Δ/σ)max < 0.001
221 parametersΔρmax = 0.21 e Å3
1 restraintΔρmin = −0.14 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.99692 (12)0.27815 (11)0.41600 (9)0.0248 (2)
O200.65433 (12)0.17836 (11)0.28853 (9)0.0213 (2)
N30.79655 (14)0.40974 (12)0.33736 (10)0.0202 (2)
C160.75996 (15)0.03243 (13)0.14241 (11)0.0174 (3)
C140.91785 (16)0.22492 (14)0.21866 (11)0.0185 (3)
C191.04036 (16)0.19395 (15)0.14295 (12)0.0204 (3)
H191.13540.24720.14380.025*
C20.94417 (16)0.33629 (15)0.30751 (12)0.0210 (3)
H21.02650.40160.27950.025*
C60.87041 (16)0.27789 (16)0.60254 (12)0.0233 (3)
C150.77689 (15)0.14637 (14)0.21694 (11)0.0177 (3)
C40.84147 (17)0.47509 (15)0.45020 (13)0.0241 (3)
H40.91040.55560.43420.029*
C210.61341 (16)−0.06087 (14)0.14940 (12)0.0189 (3)
C230.60832 (17)−0.12120 (14)0.27378 (12)0.0221 (3)
H23A0.515−0.18110.27910.033*
H23B0.6−0.04770.33090.033*
H23C0.7067−0.17310.29030.033*
C80.71138 (18)0.08617 (17)0.66066 (14)0.0280 (3)
H80.64690.00990.64020.034*
C220.62164 (19)−0.17981 (16)0.06338 (13)0.0273 (3)
H22A0.526−0.23680.07060.041*
H22B0.718−0.23380.08130.041*
H22C0.6261−0.1448−0.01670.041*
C170.88590 (16)0.00653 (14)0.06749 (11)0.0199 (3)
H170.8768−0.06810.01520.024*
C130.7473 (2)0.50590 (16)0.24528 (14)0.0285 (3)
H13A0.64920.55270.26790.043*
H13B0.72670.45680.17180.043*
H13C0.8330.57240.23450.043*
C90.74020 (19)0.11793 (18)0.77790 (14)0.0316 (4)
H90.69680.06290.83740.038*
C50.94712 (16)0.36461 (16)0.51019 (12)0.0242 (3)
H51.04460.40910.5460.029*
C181.02423 (16)0.08575 (15)0.06636 (12)0.0215 (3)
H181.10690.06570.01350.026*
C110.89769 (18)0.30989 (18)0.72035 (13)0.0284 (3)
H110.96120.38660.74120.034*
C240.45695 (17)0.01669 (16)0.11992 (14)0.0257 (3)
H24A0.3653−0.04520.12490.039*
H24B0.46120.05340.04040.039*
H24C0.44470.09120.17570.039*
C100.8326 (2)0.23041 (19)0.80740 (14)0.0323 (4)
H100.85160.25320.88740.039*
C120.69710 (19)0.52203 (17)0.51714 (14)0.0301 (3)
H12A0.63890.59150.47170.045*
H12B0.73330.56010.59260.045*
H12C0.62590.44480.53040.045*
C70.77616 (17)0.16510 (16)0.57324 (13)0.0244 (3)
H70.75640.14240.49340.029*
H200.680 (2)0.258 (3)0.3212 (18)0.040 (5)*
U11U22U33U12U13U23
O10.0234 (5)0.0272 (5)0.0237 (5)0.0053 (4)−0.0006 (4)−0.0053 (4)
O200.0187 (4)0.0178 (5)0.0278 (5)−0.0037 (4)0.0079 (4)−0.0053 (4)
N30.0219 (5)0.0147 (5)0.0239 (6)−0.0007 (4)0.0028 (4)−0.0002 (4)
C160.0189 (6)0.0150 (6)0.0183 (6)0.0009 (5)−0.0004 (5)0.0027 (5)
C140.0196 (6)0.0160 (6)0.0201 (6)−0.0004 (5)0.0022 (5)0.0015 (5)
C190.0175 (6)0.0212 (7)0.0227 (6)−0.0013 (5)0.0028 (5)0.0050 (5)
C20.0182 (6)0.0191 (6)0.0259 (7)−0.0040 (5)0.0032 (5)−0.0010 (5)
C60.0200 (6)0.0257 (7)0.0242 (7)0.0065 (6)−0.0015 (5)−0.0031 (6)
C150.0181 (6)0.0156 (6)0.0195 (6)0.0014 (5)0.0031 (5)0.0016 (5)
C40.0251 (7)0.0172 (6)0.0303 (7)−0.0042 (5)0.0023 (5)−0.0051 (5)
C210.0204 (6)0.0154 (6)0.0210 (6)−0.0019 (5)0.0015 (5)0.0003 (5)
C230.0251 (7)0.0179 (7)0.0236 (7)−0.0022 (5)0.0037 (5)0.0032 (5)
C80.0248 (7)0.0253 (7)0.0338 (8)0.0065 (6)−0.0008 (6)0.0030 (6)
C220.0336 (8)0.0199 (7)0.0286 (7)−0.0052 (6)0.0033 (6)−0.0057 (6)
C170.0253 (6)0.0176 (6)0.0168 (6)0.0032 (5)0.0003 (5)0.0014 (5)
C130.0336 (8)0.0194 (7)0.0328 (8)0.0022 (6)0.0040 (6)0.0046 (6)
C90.0305 (8)0.0345 (9)0.0298 (7)0.0155 (7)0.0038 (6)0.0080 (7)
C50.0196 (6)0.0255 (7)0.0275 (7)−0.0007 (6)−0.0011 (5)−0.0086 (6)
C180.0205 (6)0.0256 (7)0.0186 (6)0.0047 (6)0.0058 (5)0.0033 (5)
C110.0265 (7)0.0315 (8)0.0267 (7)0.0098 (6)−0.0050 (5)−0.0075 (6)
C240.0216 (7)0.0204 (7)0.0349 (8)−0.0012 (6)−0.0027 (5)0.0016 (6)
C100.0349 (8)0.0378 (9)0.0238 (7)0.0176 (7)−0.0036 (6)−0.0032 (7)
C120.0319 (8)0.0247 (7)0.0339 (8)0.0047 (6)0.0043 (6)−0.0062 (7)
C70.0230 (7)0.0253 (7)0.0248 (7)0.0042 (6)−0.0016 (5)−0.0021 (6)
O1—C21.4243 (17)C23—H23C0.98
O1—C51.4441 (17)C8—C71.388 (2)
O20—C151.3638 (15)C8—C91.391 (2)
O20—H200.90 (2)C8—H80.95
N3—C131.4667 (19)C22—H22A0.98
N3—C21.4756 (18)C22—H22B0.98
N3—C41.4805 (18)C22—H22C0.98
C16—C171.3970 (18)C17—C181.393 (2)
C16—C151.4151 (18)C17—H170.95
C16—C211.5327 (18)C13—H13A0.98
C14—C191.3911 (18)C13—H13B0.98
C14—C151.4064 (18)C13—H13C0.98
C14—C21.5081 (19)C9—C101.387 (3)
C19—C181.385 (2)C9—H90.95
C19—H190.95C5—H51
C2—H21C18—H180.95
C6—C111.396 (2)C11—C101.389 (2)
C6—C71.397 (2)C11—H110.95
C6—C51.515 (2)C24—H24A0.98
C4—C121.516 (2)C24—H24B0.98
C4—C51.548 (2)C24—H24C0.98
C4—H41C10—H100.95
C21—C221.5338 (19)C12—H12A0.98
C21—C241.540 (2)C12—H12B0.98
C21—C231.5433 (18)C12—H12C0.98
C23—H23A0.98C7—H70.95
C23—H23B0.98
C2—O1—C5108.87 (11)C21—C22—H22B109.5
C15—O20—H20106.2 (13)H22A—C22—H22B109.5
C13—N3—C2111.67 (11)C21—C22—H22C109.5
C13—N3—C4113.71 (12)H22A—C22—H22C109.5
C2—N3—C4102.96 (11)H22B—C22—H22C109.5
C17—C16—C15116.81 (12)C18—C17—C16122.63 (13)
C17—C16—C21122.37 (12)C18—C17—H17118.7
C15—C16—C21120.75 (11)C16—C17—H17118.7
C19—C14—C15119.83 (12)N3—C13—H13A109.5
C19—C14—C2118.96 (12)N3—C13—H13B109.5
C15—C14—C2121.05 (11)H13A—C13—H13B109.5
C18—C19—C14120.22 (13)N3—C13—H13C109.5
C18—C19—H19119.9H13A—C13—H13C109.5
C14—C19—H19119.9H13B—C13—H13C109.5
O1—C2—N3103.56 (10)C10—C9—C8119.59 (15)
O1—C2—C14109.16 (12)C10—C9—H9120.2
N3—C2—C14114.06 (11)C8—C9—H9120.2
O1—C2—H2110O1—C5—C6108.80 (12)
N3—C2—H2110O1—C5—C4104.91 (11)
C14—C2—H2110C6—C5—C4117.42 (11)
C11—C6—C7119.09 (14)O1—C5—H5108.5
C11—C6—C5119.00 (14)C6—C5—H5108.5
C7—C6—C5121.90 (13)C4—C5—H5108.5
O20—C15—C14120.21 (12)C19—C18—C17119.46 (12)
O20—C15—C16118.81 (12)C19—C18—H18120.3
C14—C15—C16120.97 (11)C17—C18—H18120.3
N3—C4—C12112.88 (12)C10—C11—C6120.52 (15)
N3—C4—C5101.85 (11)C10—C11—H11119.7
C12—C4—C5116.12 (13)C6—C11—H11119.7
N3—C4—H4108.5C21—C24—H24A109.5
C12—C4—H4108.5C21—C24—H24B109.5
C5—C4—H4108.5H24A—C24—H24B109.5
C16—C21—C22112.05 (11)C21—C24—H24C109.5
C16—C21—C24111.12 (11)H24A—C24—H24C109.5
C22—C21—C24107.05 (12)H24B—C24—H24C109.5
C16—C21—C23108.84 (11)C9—C10—C11120.18 (15)
C22—C21—C23107.38 (12)C9—C10—H10119.9
C24—C21—C23110.34 (11)C11—C10—H10119.9
C21—C23—H23A109.5C4—C12—H12A109.5
C21—C23—H23B109.5C4—C12—H12B109.5
H23A—C23—H23B109.5H12A—C12—H12B109.5
C21—C23—H23C109.5C4—C12—H12C109.5
H23A—C23—H23C109.5H12A—C12—H12C109.5
H23B—C23—H23C109.5H12B—C12—H12C109.5
C7—C8—C9120.51 (16)C8—C7—C6120.11 (14)
C7—C8—H8119.7C8—C7—H7119.9
C9—C8—H8119.7C6—C7—H7119.9
C21—C22—H22A109.5
C15—C14—C19—C18−0.3 (2)C17—C16—C21—C24−121.31 (14)
C2—C14—C19—C18175.24 (12)C15—C16—C21—C2461.85 (16)
C5—O1—C2—N3−29.88 (13)C17—C16—C21—C23116.99 (14)
C5—O1—C2—C14−151.74 (11)C15—C16—C21—C23−59.85 (16)
C13—N3—C2—O1164.76 (12)C15—C16—C17—C181.39 (19)
C4—N3—C2—O142.40 (13)C21—C16—C17—C18−175.57 (12)
C13—N3—C2—C14−76.72 (15)C7—C8—C9—C100.9 (2)
C4—N3—C2—C14160.91 (11)C2—O1—C5—C6132.44 (12)
C19—C14—C2—O1−95.64 (14)C2—O1—C5—C46.00 (14)
C15—C14—C2—O179.84 (15)C11—C6—C5—O1142.27 (13)
C19—C14—C2—N3149.09 (13)C7—C6—C5—O1−36.26 (17)
C15—C14—C2—N3−35.44 (17)C11—C6—C5—C4−98.86 (15)
C19—C14—C15—O20−178.14 (12)C7—C6—C5—C482.61 (17)
C2—C14—C15—O206.42 (19)N3—C4—C5—O119.92 (13)
C19—C14—C15—C162.55 (19)C12—C4—C5—O1142.96 (13)
C2—C14—C15—C16−172.88 (13)N3—C4—C5—C6−101.00 (13)
C17—C16—C15—O20177.65 (12)C12—C4—C5—C622.04 (18)
C21—C16—C15—O20−5.34 (18)C14—C19—C18—C17−1.3 (2)
C17—C16—C15—C14−3.03 (18)C16—C17—C18—C190.8 (2)
C21—C16—C15—C14173.98 (12)C7—C6—C11—C100.3 (2)
C13—N3—C4—C1276.22 (16)C5—C6—C11—C10−178.31 (13)
C2—N3—C4—C12−162.80 (12)C8—C9—C10—C11−0.8 (2)
C13—N3—C4—C5−158.56 (12)C6—C11—C10—C90.2 (2)
C2—N3—C4—C5−37.58 (13)C9—C8—C7—C6−0.4 (2)
C17—C16—C21—C22−1.61 (18)C11—C6—C7—C8−0.2 (2)
C15—C16—C21—C22−178.45 (12)C5—C6—C7—C8178.33 (13)
D—H···AD—HH···AD···AD—H···A
O20—H20···N30.90 (2)1.79 (2)2.6244 (16)154.4 (19)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O20—H20⋯N30.90 (2)1.79 (2)2.6244 (16)154.4 (19)
  6 in total

1.  Retrieval of crystallographically-derived molecular geometry information.

Authors:  Ian J Bruno; Jason C Cole; Magnus Kessler; Jie Luo; W D Sam Motherwell; Lucy H Purkis; Barry R Smith; Robin Taylor; Richard I Cooper; Stephanie E Harris; A Guy Orpen
Journal:  J Chem Inf Comput Sci       Date:  2004 Nov-Dec

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  (6S)-2,4-Di-tert-butyl-6-[(4S,5R)-3-iso-propyl-4-methyl-5-phenyloxazolidin-2-yl]phenol.

Authors:  Ian Sean Campbell; Kate L Edler; Raleigh W Parrott; Shawn R Hitchcock; Gregory M Ferrence
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-03-24

4.  (6R)-2-tert-Butyl-6-[(4R,5S)-3-isopropyl-4-methyl-5-phenyl-oxazolidin-2-yl]phenol.

Authors:  Takaoki Koyanagi; Kate L Edler; Raleigh W Parrott; Shawn R Hitchcock; Gregory M Ferrence
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-03-24

5.  A toolkit for publishing enhanced figures.

Authors:  Brian McMahon; Robert M Hanson
Journal:  J Appl Crystallogr       Date:  2008-07-01       Impact factor: 3.304

6.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  6 in total
  2 in total

1.  (6S)-2,4-Di-tert-butyl-6-[(4S,5R)-3-iso-propyl-4-methyl-5-phenyloxazolidin-2-yl]phenol.

Authors:  Ian Sean Campbell; Kate L Edler; Raleigh W Parrott; Shawn R Hitchcock; Gregory M Ferrence
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-03-24

2.  (6R)-2-tert-Butyl-6-[(4R,5S)-3-isopropyl-4-methyl-5-phenyl-oxazolidin-2-yl]phenol.

Authors:  Takaoki Koyanagi; Kate L Edler; Raleigh W Parrott; Shawn R Hitchcock; Gregory M Ferrence
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-03-24
  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.