Literature DB >> 21580714

(6R)-2-tert-Butyl-6-[(4R,5S)-3-isopropyl-4-methyl-5-phenyl-oxazolidin-2-yl]phenol.

Takaoki Koyanagi1, Kate L Edler, Raleigh W Parrott, Shawn R Hitchcock, Gregory M Ferrence.   

Abstract

In the title compound, C(23)H(31)NO(2), the lone pair on the nitro-gen atom is oriented to facilitate intra-molecular hydrogen bonding with the hydr-oxy group residing on the phenyl substituent. The five-membered ring adopts an envelope confornmation with the O atom at the flap. The absolute stereochemistry was verified by measurement of optical activity using a digital polarimeter.

Entities:  

Year:  2010        PMID: 21580714      PMCID: PMC2983796          DOI: 10.1107/S1600536810009591

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures and background to the use of chiral oxazolidines in asymmetric synthesis, see: Agami & Couty (2004 ▶); Anderson et al. (2010 ▶); Campbell et al. (2010 ▶); Ge et al. (2003 ▶); Hitchcock et al. (2004 ▶); Nakano et al. (2001 ▶); Parrott et al. (2008 ▶); Parrott & Hitchcock (2007 ▶). For geometry checks using Mogul, see: Bruno et al. (2004 ▶). For ring puckering analysis, see: Boeyens (1978 ▶); Cremer & Pople (1975 ▶); Spek (2009 ▶). For a description of the Jmol toolkit for the preparation of enhanced figures, see: McMahon & Hanson (2008 ▶).

Experimental

Crystal data

C23H31NO2 M = 353.49 Monoclinic, a = 9.5077 (6) Å b = 7.3257 (5) Å c = 14.983 (1) Å β = 101.615 (1)° V = 1022.20 (12) Å3 Z = 2 Mo Kα radiation μ = 0.07 mm−1 T = 140 K 0.53 × 0.41 × 0.39 mm

Data collection

Bruker SMART APEX CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2008 ▶) T min = 0.823, T max = 0.972 9840 measured reflections 2537 independent reflections 2445 reflections with I > 2σ(I) R int = 0.019

Refinement

R[F 2 > 2σ(F 2)] = 0.03 wR(F 2) = 0.082 S = 1.03 2537 reflections 239 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.22 e Å−3 Δρmin = −0.15 e Å−3 Data collection: APEX2 (Bruker, 2008 ▶); cell refinement: APEX2 and SAINT (Bruker, 2008 ▶); data reduction: SAINT; program(s) used to solve structure: SIR2004 (Burla et al., 2005 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and Mercury (Macrae et al., 2008 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and publCIF (McMahon & Westrip, 2008 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810009591/zl2268sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810009591/zl2268Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report Enhanced figure: interactive version of Fig. 2
C23H31NO2F(000) = 384
Mr = 353.49Dx = 1.148 Mg m3
Monoclinic, P21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ybCell parameters from 8065 reflections
a = 9.5077 (6) Åθ = 2.3–31.2°
b = 7.3257 (5) ŵ = 0.07 mm1
c = 14.983 (1) ÅT = 140 K
β = 101.615 (1)°Block, colourless
V = 1022.20 (12) Å30.53 × 0.41 × 0.39 mm
Z = 2
Bruker SMART APEX CCD diffractometer2445 reflections with I > 2σ(I)
ω scansRint = 0.019
Absorption correction: multi-scan (SADABS; Bruker, 2008)θmax = 27.5°, θmin = 1.4°
Tmin = 0.823, Tmax = 0.972h = −12→12
9840 measured reflectionsk = −9→9
2537 independent reflectionsl = −19→19
Refinement on F21 restraint
Least-squares matrix: fullH atoms treated by a mixture of independent and constrained refinement
R[F2 > 2σ(F2)] = 0.03w = 1/[σ2(Fo2) + (0.0516P)2 + 0.1569P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.082(Δ/σ)max < 0.001
S = 1.03Δρmax = 0.22 e Å3
2537 reflectionsΔρmin = −0.15 e Å3
239 parameters
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
xyzUiso*/Ueq
O10.09280 (10)0.05027 (15)0.41402 (6)0.0211 (2)
O220.31418 (10)0.10290 (16)0.25925 (7)0.0232 (2)
N30.18897 (12)0.30937 (18)0.36374 (8)0.0188 (2)
C160.06048 (15)0.07792 (19)0.25140 (9)0.0202 (3)
C170.18240 (15)0.0483 (2)0.21331 (9)0.0199 (3)
C20.06770 (14)0.1778 (2)0.34047 (9)0.0192 (3)
H2−0.02510.24290.33940.023*
C180.16944 (16)−0.0342 (2)0.12667 (9)0.0232 (3)
C70.25468 (16)−0.1201 (2)0.56806 (11)0.0261 (3)
H70.2477−0.17410.50970.031*
C50.13056 (14)0.1627 (2)0.49354 (9)0.0205 (3)
H50.04240.22490.50520.025*
C120.39146 (14)0.2626 (2)0.49450 (10)0.0241 (3)
H12A0.44860.35980.47430.036*
H12B0.41160.14660.4670.036*
H12C0.41650.25240.5610.036*
C110.20485 (16)0.1286 (3)0.66191 (10)0.0287 (3)
H110.16330.24480.66770.034*
C190.03264 (18)−0.0911 (2)0.08297 (10)0.0277 (3)
H190.0214−0.14820.0250.033*
C80.32400 (16)−0.2135 (3)0.64589 (11)0.0336 (4)
H80.3641−0.33080.64040.04*
C21−0.07376 (15)0.0199 (2)0.20467 (10)0.0240 (3)
H21−0.15620.04010.23010.029*
C60.19613 (14)0.0511 (2)0.57569 (9)0.0220 (3)
C130.15692 (15)0.4965 (2)0.32618 (10)0.0227 (3)
H130.08480.55420.35750.027*
C140.29374 (16)0.6112 (2)0.34524 (11)0.0264 (3)
H14A0.33310.61280.41090.04*
H14B0.27140.73630.32370.04*
H14C0.36450.55830.31330.04*
C90.33429 (17)−0.1348 (3)0.73133 (11)0.0382 (5)
H90.3823−0.19750.78420.046*
C40.23252 (14)0.3075 (2)0.46524 (9)0.0199 (3)
H40.21280.42960.490.024*
C230.30071 (18)−0.0529 (3)0.08149 (10)0.0293 (4)
C150.09567 (18)0.4936 (2)0.22390 (10)0.0293 (3)
H15A0.00770.42020.21170.044*
H15B0.16630.44010.19210.044*
H15C0.07370.61850.20220.044*
C20−0.08768 (17)−0.0671 (2)0.12135 (11)0.0280 (3)
H20−0.1789−0.11010.09050.034*
C250.41693 (19)−0.1736 (3)0.13943 (11)0.0374 (4)
H25A0.4993−0.18330.10960.056*
H25B0.3776−0.29550.14580.056*
H25C0.4478−0.11870.19990.056*
C100.27441 (18)0.0356 (3)0.73926 (11)0.0364 (4)
H100.28090.0890.79770.044*
C240.3624 (2)0.1375 (3)0.06962 (12)0.0380 (4)
H24A0.44610.12580.04110.057*
H24B0.39130.19580.12940.057*
H24C0.28910.21220.03080.057*
C260.2602 (2)−0.1396 (4)−0.01343 (12)0.0464 (5)
H26A0.3459−0.1496−0.040.07*
H26B0.1886−0.0632−0.05260.07*
H26C0.2201−0.2615−0.00830.07*
H220.301 (2)0.178 (4)0.3002 (15)0.039 (6)*
U11U22U33U12U13U23
O10.0221 (5)0.0231 (5)0.0171 (4)−0.0026 (4)0.0016 (3)0.0013 (4)
O220.0192 (5)0.0296 (6)0.0200 (5)0.0013 (4)0.0017 (4)−0.0037 (5)
N30.0171 (5)0.0183 (6)0.0196 (5)0.0004 (5)0.0007 (4)0.0005 (5)
C160.0218 (6)0.0182 (7)0.0189 (6)0.0006 (5)0.0005 (5)0.0016 (5)
C170.0210 (6)0.0186 (6)0.0186 (6)0.0013 (5)0.0002 (5)0.0027 (5)
C20.0163 (6)0.0207 (7)0.0199 (6)0.0001 (5)0.0016 (5)0.0018 (5)
C180.0280 (7)0.0218 (7)0.0186 (6)0.0020 (6)0.0023 (5)0.0028 (6)
C70.0202 (6)0.0354 (9)0.0238 (7)0.0010 (6)0.0074 (5)0.0044 (6)
C50.0168 (6)0.0259 (7)0.0186 (6)0.0004 (6)0.0032 (5)−0.0018 (6)
C120.0159 (6)0.0311 (8)0.0240 (7)−0.0015 (6)0.0010 (5)0.0041 (6)
C110.0261 (7)0.0388 (9)0.0218 (7)−0.0080 (7)0.0062 (5)−0.0035 (7)
C190.0343 (8)0.0257 (8)0.0199 (7)−0.0005 (7)−0.0020 (6)−0.0007 (6)
C80.0219 (7)0.0432 (10)0.0364 (8)0.0026 (7)0.0077 (6)0.0139 (8)
C210.0214 (6)0.0229 (8)0.0257 (7)−0.0005 (6)−0.0001 (5)0.0025 (6)
C60.0158 (5)0.0306 (8)0.0200 (6)−0.0047 (6)0.0047 (5)0.0015 (6)
C130.0218 (6)0.0188 (7)0.0263 (7)0.0031 (6)0.0021 (5)0.0015 (6)
C140.0268 (7)0.0207 (7)0.0309 (7)−0.0014 (6)0.0035 (6)0.0017 (6)
C90.0233 (7)0.0620 (13)0.0265 (8)−0.0078 (8)−0.0011 (6)0.0178 (8)
C40.0169 (6)0.0231 (7)0.0193 (6)0.0008 (5)0.0023 (5)−0.0014 (5)
C230.0330 (8)0.0385 (9)0.0166 (6)0.0029 (7)0.0054 (6)0.0001 (7)
C150.0308 (8)0.0258 (8)0.0278 (7)0.0002 (7)−0.0028 (6)0.0071 (6)
C200.0257 (7)0.0264 (8)0.0270 (7)−0.0034 (6)−0.0065 (6)−0.0002 (6)
C250.0400 (9)0.0463 (11)0.0280 (8)0.0159 (9)0.0122 (7)0.0030 (8)
C100.0323 (8)0.0563 (12)0.0194 (7)−0.0160 (8)0.0025 (6)0.0005 (8)
C240.0395 (9)0.0462 (12)0.0296 (8)−0.0040 (9)0.0101 (7)0.0074 (8)
C260.0501 (10)0.0676 (15)0.0227 (8)0.0003 (11)0.0100 (7)−0.0118 (9)
O1—C21.4277 (17)C8—H80.95
O1—C51.4336 (16)C21—C201.384 (2)
O22—C171.3626 (16)C21—H210.95
O22—H220.85 (3)C13—C151.526 (2)
N3—C21.4893 (18)C13—C141.527 (2)
N3—C131.4897 (19)C13—H131
N3—C41.4936 (16)C14—H14A0.98
C16—C211.3929 (19)C14—H14B0.98
C16—C171.4081 (19)C14—H14C0.98
C16—C21.5115 (19)C9—C101.386 (3)
C17—C181.4144 (19)C9—H90.95
C2—H21C4—H41
C18—C191.397 (2)C23—C261.534 (2)
C18—C231.541 (2)C23—C241.537 (3)
C7—C61.386 (2)C23—C251.539 (2)
C7—C81.398 (2)C15—H15A0.98
C7—H70.95C15—H15B0.98
C5—C61.504 (2)C15—H15C0.98
C5—C41.552 (2)C20—H200.95
C5—H51C25—H25A0.98
C12—C41.5222 (18)C25—H25B0.98
C12—H12A0.98C25—H25C0.98
C12—H12B0.98C10—H100.95
C12—H12C0.98C24—H24A0.98
C11—C101.392 (2)C24—H24B0.98
C11—C61.398 (2)C24—H24C0.98
C11—H110.95C26—H26A0.98
C19—C201.391 (2)C26—H26B0.98
C19—H190.95C26—H26C0.98
C8—C91.389 (3)
C2—O1—C5103.91 (11)C15—C13—H13108.6
C17—O22—H22107.4 (14)C14—C13—H13108.6
C2—N3—C13114.66 (10)C13—C14—H14A109.5
C2—N3—C4105.98 (10)C13—C14—H14B109.5
C13—N3—C4112.75 (11)H14A—C14—H14B109.5
C21—C16—C17119.67 (13)C13—C14—H14C109.5
C21—C16—C2117.76 (12)H14A—C14—H14C109.5
C17—C16—C2122.54 (12)H14B—C14—H14C109.5
O22—C17—C16119.88 (12)C10—C9—C8119.90 (16)
O22—C17—C18119.37 (12)C10—C9—H9120
C16—C17—C18120.74 (12)C8—C9—H9120
O1—C2—N3103.98 (10)N3—C4—C12110.54 (11)
O1—C2—C16109.60 (12)N3—C4—C5102.94 (11)
N3—C2—C16114.54 (11)C12—C4—C5114.32 (13)
O1—C2—H2109.5N3—C4—H4109.6
N3—C2—H2109.5C12—C4—H4109.6
C16—C2—H2109.5C5—C4—H4109.6
C19—C18—C17117.29 (13)C26—C23—C24107.39 (15)
C19—C18—C23121.83 (13)C26—C23—C25107.64 (16)
C17—C18—C23120.84 (13)C24—C23—C25109.81 (15)
C6—C7—C8120.26 (16)C26—C23—C18111.68 (14)
C6—C7—H7119.9C24—C23—C18109.35 (14)
C8—C7—H7119.9C25—C23—C18110.88 (13)
O1—C5—C6111.15 (12)C13—C15—H15A109.5
O1—C5—C4103.38 (10)C13—C15—H15B109.5
C6—C5—C4114.59 (11)H15A—C15—H15B109.5
O1—C5—H5109.2C13—C15—H15C109.5
C6—C5—H5109.2H15A—C15—H15C109.5
C4—C5—H5109.2H15B—C15—H15C109.5
C4—C12—H12A109.5C21—C20—C19119.59 (14)
C4—C12—H12B109.5C21—C20—H20120.2
H12A—C12—H12B109.5C19—C20—H20120.2
C4—C12—H12C109.5C23—C25—H25A109.5
H12A—C12—H12C109.5C23—C25—H25B109.5
H12B—C12—H12C109.5H25A—C25—H25B109.5
C10—C11—C6120.03 (18)C23—C25—H25C109.5
C10—C11—H11120H25A—C25—H25C109.5
C6—C11—H11120H25B—C25—H25C109.5
C20—C19—C18122.28 (14)C9—C10—C11120.27 (16)
C20—C19—H19118.9C9—C10—H10119.9
C18—C19—H19118.9C11—C10—H10119.9
C9—C8—C7119.96 (18)C23—C24—H24A109.5
C9—C8—H8120C23—C24—H24B109.5
C7—C8—H8120H24A—C24—H24B109.5
C20—C21—C16120.36 (14)C23—C24—H24C109.5
C20—C21—H21119.8H24A—C24—H24C109.5
C16—C21—H21119.8H24B—C24—H24C109.5
C7—C6—C11119.57 (15)C23—C26—H26A109.5
C7—C6—C5122.10 (13)C23—C26—H26B109.5
C11—C6—C5118.23 (15)H26A—C26—H26B109.5
N3—C13—C15111.98 (12)C23—C26—H26C109.5
N3—C13—C14109.53 (12)H26A—C26—H26C109.5
C15—C13—C14109.52 (12)H26B—C26—H26C109.5
N3—C13—H13108.6
C21—C16—C17—O22−179.25 (14)C10—C11—C6—C5−175.15 (14)
C2—C16—C17—O223.2 (2)O1—C5—C6—C719.92 (18)
C21—C16—C17—C182.2 (2)C4—C5—C6—C7−96.81 (16)
C2—C16—C17—C18−175.41 (13)O1—C5—C6—C11−163.77 (12)
C5—O1—C2—N344.04 (12)C4—C5—C6—C1179.50 (16)
C5—O1—C2—C16166.94 (10)C2—N3—C13—C15−51.80 (16)
C13—N3—C2—O1−152.55 (11)C4—N3—C13—C15−173.20 (11)
C4—N3—C2—O1−27.52 (13)C2—N3—C13—C14−173.49 (11)
C13—N3—C2—C1687.86 (14)C4—N3—C13—C1465.11 (14)
C4—N3—C2—C16−147.11 (12)C7—C8—C9—C100.7 (2)
C21—C16—C2—O191.78 (15)C2—N3—C4—C12124.33 (13)
C17—C16—C2—O1−90.58 (15)C13—N3—C4—C12−109.47 (14)
C21—C16—C2—N3−151.83 (13)C2—N3—C4—C51.83 (13)
C17—C16—C2—N325.82 (18)C13—N3—C4—C5128.03 (12)
O22—C17—C18—C19178.79 (14)O1—C5—C4—N324.25 (13)
C16—C17—C18—C19−2.6 (2)C6—C5—C4—N3145.35 (12)
O22—C17—C18—C23−3.5 (2)O1—C5—C4—C12−95.68 (13)
C16—C17—C18—C23175.10 (14)C6—C5—C4—C1225.43 (17)
C2—O1—C5—C6−165.84 (10)C19—C18—C23—C26−0.2 (2)
C2—O1—C5—C4−42.44 (12)C17—C18—C23—C26−177.83 (16)
C17—C18—C19—C200.8 (2)C19—C18—C23—C24118.53 (17)
C23—C18—C19—C20−176.94 (16)C17—C18—C23—C24−59.10 (18)
C6—C7—C8—C90.1 (2)C19—C18—C23—C25−120.25 (17)
C17—C16—C21—C200.2 (2)C17—C18—C23—C2562.1 (2)
C2—C16—C21—C20177.93 (14)C16—C21—C20—C19−2.1 (2)
C8—C7—C6—C11−1.0 (2)C18—C19—C20—C211.6 (3)
C8—C7—C6—C5175.25 (13)C8—C9—C10—C11−0.4 (2)
C10—C11—C6—C71.3 (2)C6—C11—C10—C9−0.5 (2)
D—H···AD—HH···AD···AD—H···A
O22—H22···N30.85 (3)1.84 (2)2.6280 (16)154 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O22—H22⋯N30.85 (3)1.84 (2)2.6280 (16)154 (2)
  7 in total

1.  Retrieval of crystallographically-derived molecular geometry information.

Authors:  Ian J Bruno; Jason C Cole; Magnus Kessler; Jie Luo; W D Sam Motherwell; Lucy H Purkis; Barry R Smith; Robin Taylor; Richard I Cooper; Stephanie E Harris; A Guy Orpen
Journal:  J Chem Inf Comput Sci       Date:  2004 Nov-Dec

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  (6S)-2,4-Di-tert-butyl-6-[(4S,5R)-3-iso-propyl-4-methyl-5-phenyloxazolidin-2-yl]phenol.

Authors:  Ian Sean Campbell; Kate L Edler; Raleigh W Parrott; Shawn R Hitchcock; Gregory M Ferrence
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-03-24

4.  (6S)-2-tert-Butyl-6-[(4S,5R)-3,4-dimethyl-5-phenyloxazolidin-2-yl]phenol.

Authors:  Alexander E Anderson; Kate L Edler; Raleigh W Parrott; Shawn R Hitchcock; Gregory M Ferrence
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-03-24

5.  Intramolecular chiral relay at stereogenic nitrogen. Synthesis and application of a new chiral auxiliary derived from (1R,2S)-norephedrine and acetone.

Authors:  Shawn R Hitchcock; David M Casper; Jeremy F Vaughn; Jennifer M Finefield; Gregory M Ferrence; Joel M Esken
Journal:  J Org Chem       Date:  2004-02-06       Impact factor: 4.354

6.  A toolkit for publishing enhanced figures.

Authors:  Brian McMahon; Robert M Hanson
Journal:  J Appl Crystallogr       Date:  2008-07-01       Impact factor: 3.304

7.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  7 in total
  2 in total

1.  (6S)-2,4-Di-tert-butyl-6-[(4S,5R)-3-iso-propyl-4-methyl-5-phenyloxazolidin-2-yl]phenol.

Authors:  Ian Sean Campbell; Kate L Edler; Raleigh W Parrott; Shawn R Hitchcock; Gregory M Ferrence
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-03-24

2.  (6S)-2-tert-Butyl-6-[(4S,5R)-3,4-dimethyl-5-phenyloxazolidin-2-yl]phenol.

Authors:  Alexander E Anderson; Kate L Edler; Raleigh W Parrott; Shawn R Hitchcock; Gregory M Ferrence
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-03-24
  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.