Literature DB >> 21580641

5,6,7,8-Tetra-hydro-quinoline 1-oxide hemihydrate.

Zbigniew Karczmarzyk, Teodozja M Lipińska, Waldemar Wysocki, Zofia Urbańczyk-Lipkowska, Przemysław Kalicki.   

Abstract

In the title compound, C(9)H(11)NO·0.5H(2)O, the asymmetric unit contains two similar mol-ecules of 5,6,7,8-tetra-hydro-quinoline 1-oxide and one water mol-ecule. The water mol-ecule links the two O atoms of both independent N-oxides into dimers via O-H⋯O hydrogen bonds, forming a three-dimensional network along [101], which is additionally stabilized by weak C-H⋯O inter-molecular inter-actions. In each mol-ecule, the saturated six-membered rings exist in a conformation inter-mediate between a half-chair and sofa.

Entities:  

Year:  2010        PMID: 21580641      PMCID: PMC2984073          DOI: 10.1107/S1600536810008779

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the chemistry of the title compound and its applications, see: Coperet et al. (1998 ▶); Li (2005 ▶); Kaiser et al. (2006 ▶); Kaczorowski et al. (2009 ▶). For the synthesis, see: Jacobs et al. (2000 ▶); Barbay et al. (2008 ▶). For the biological activity of 5,6,7,8-tetra­hydro­quinoline derivatives, see: Calhoun et al. (1995 ▶); Abd El-Salam et al. (2009 ▶). For a related structure, see: HXTHQO (CSD, November 2009 release). For structure inter­pretation tools, see: Duax & Norton (1975 ▶); Allen et al. (1987 ▶); Allen (2002 ▶); Bruno et al. (2002 ▶).

Experimental

Crystal data

C9H11NO·0.5H2O M = 158.20 Orthorhombic, a = 14.725 (4) Å b = 14.464 (4) Å c = 15.474 (3) Å V = 3295.7 (14) Å3 Z = 16 Cu Kα radiation μ = 0.70 mm−1 T = 293 K 0.28 × 0.26 × 0.21 mm

Data collection

Bruker SMART APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.832, T max = 0.873 11258 measured reflections 2727 independent reflections 1989 reflections with I > 2σ(I) R int = 0.053

Refinement

R[F 2 > 2σ(F 2)] = 0.051 wR(F 2) = 0.205 S = 1.39 2727 reflections 215 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.44 e Å−3 Δρmin = −0.24 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97 and WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810008779/jj2025sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810008779/jj2025Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C9H11NO·0.5H2OF(000) = 1360
Mr = 158.20Dx = 1.275 Mg m3
Orthorhombic, PbcaCu Kα radiation, λ = 1.54178 Å
Hall symbol: -P 2ac 2abCell parameters from 3676 reflections
a = 14.725 (4) Åθ = 5.7–66.9°
b = 14.464 (4) ŵ = 0.70 mm1
c = 15.474 (3) ÅT = 293 K
V = 3295.7 (14) Å3Block, colourless
Z = 160.28 × 0.26 × 0.21 mm
Bruker SMART APEXII CCD diffractometer2727 independent reflections
Radiation source: fine-focus sealed tube1989 reflections with I > 2σ(I)
graphiteRint = 0.053
φ and ω scansθmax = 65.4°, θmin = 5.2°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −17→16
Tmin = 0.832, Tmax = 0.873k = −16→17
11258 measured reflectionsl = −18→10
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.051H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.205w = 1/[σ2(Fo2) + (0.1P)2] where P = (Fo2 + 2Fc2)/3
S = 1.39(Δ/σ)max < 0.001
2727 reflectionsΔρmax = 0.44 e Å3
215 parametersΔρmin = −0.24 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0014 (4)
Experimental. 1H MNR (400 MHz, CDCl3) δ: 8.13 (d, 1H, J = 6.0 Hz), 7.04–6.99 (m, 2H), 2.93 (t, 2H, J = 6.4 Hz), 2.75 (t, 2H, J = 6.4 Hz), 2.40 (br s, 1H), 1.92–1.85 (m, 2H), 1,78–1.72 (m, 2H); 13C MNR (100 MHz, CDCl3) δ: 148.8, 136.9, 136.4, 126.6, 121.9, 28.6, 24.6, 21.8, 21.6; IR (KBr, ν, cm-1): 3368 (s, OH), 3312 (s, OH), 3076 (m), 3050 (m), 3009 (m), 2935 (s), 2871 (m), 2837 (m), 2498 (w), 2410 (w), 2151 (w), 1970 (w), 1686 (m, NO), 1596 (m), 1482 (m), 1449 (s), 1334 (m), 1253 (s), 1232 (s), 1211 (s), 1194 (s), 1155 (m), 1089 (m), 1074 (s), 1041 (m), 971 (s), 897 (m), 865 (w), 830 (m), 797 (s), 701 (m), 676 (m).
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O1A0.11925 (15)0.33158 (10)0.13008 (9)0.0703 (6)
N1A0.13994 (15)0.41708 (12)0.11018 (11)0.0502 (6)
C2A0.16947 (18)0.47498 (16)0.17206 (15)0.0581 (7)
H2A0.17370.45470.22900.087*
C3A0.1930 (2)0.56261 (17)0.15166 (17)0.0666 (8)
H3A0.21430.60250.19420.100*
C4A0.1853 (2)0.59244 (16)0.06758 (18)0.0669 (8)
H4A0.20180.65270.05360.100*
C5A0.1449 (2)0.56465 (16)−0.08980 (17)0.0686 (8)
H51A0.09000.6010−0.09640.103*
H52A0.19610.6041−0.10410.103*
C6A0.1422 (2)0.4849 (2)−0.15194 (16)0.0774 (9)
H61A0.12680.5075−0.20910.116*
H62A0.20180.4566−0.15510.116*
C7A0.0749 (2)0.41457 (18)−0.12508 (14)0.0673 (8)
H71A0.07410.3649−0.16720.101*
H72A0.01490.4424−0.12420.101*
C8A0.09560 (19)0.37485 (14)−0.03650 (13)0.0534 (7)
H81A0.04080.3472−0.01320.080*
H82A0.14050.3262−0.04260.080*
C9A0.13012 (16)0.44502 (14)0.02589 (12)0.0455 (6)
C10A0.15331 (17)0.53397 (15)0.00343 (15)0.0520 (6)
O1B0.13846 (14)0.36329 (13)0.38241 (10)0.0701 (6)
N1B0.05059 (15)0.35441 (11)0.39183 (10)0.0489 (6)
C2B−0.0012 (2)0.33685 (15)0.32153 (14)0.0571 (7)
H2B0.02580.33140.26740.086*
C3B−0.0921 (2)0.32725 (16)0.32982 (17)0.0647 (8)
H3B−0.12770.31480.28150.097*
C4B−0.1320 (2)0.33585 (16)0.40978 (19)0.0658 (7)
H4B−0.19460.32970.41530.099*
C5B−0.1198 (3)0.3615 (2)0.57197 (19)0.0843 (11)
H51B−0.16950.31790.57760.126*
H52B−0.14410.42320.58000.126*
C6B−0.0486 (3)0.3418 (2)0.64194 (17)0.0941 (12)
H61B−0.07470.35380.69840.141*
H62B−0.03150.27710.63970.141*
C7B0.0323 (3)0.3992 (2)0.63022 (15)0.0853 (11)
H71B0.07470.38700.67680.128*
H72B0.01510.46380.63310.128*
C8B0.0784 (2)0.38036 (16)0.54433 (14)0.0591 (7)
H81B0.11620.43290.52950.089*
H82B0.11770.32700.55050.089*
C9B0.01368 (19)0.36319 (13)0.47254 (13)0.0475 (6)
C10B−0.0792 (2)0.35369 (15)0.48235 (15)0.0569 (7)
O20.21964 (17)0.24427 (13)0.26255 (13)0.0781 (7)
H210.188 (2)0.269 (2)0.213 (2)0.117*
H220.195 (2)0.280 (2)0.308 (2)0.117*
U11U22U33U12U13U23
O1A0.1126 (19)0.0511 (9)0.0473 (9)−0.0176 (9)−0.0026 (9)0.0080 (7)
N1A0.0606 (16)0.0485 (10)0.0415 (9)−0.0037 (8)0.0024 (8)−0.0043 (8)
C2A0.0615 (18)0.0618 (14)0.0510 (11)−0.0026 (12)−0.0041 (11)−0.0143 (11)
C3A0.067 (2)0.0616 (14)0.0708 (15)−0.0049 (12)−0.0088 (14)−0.0202 (12)
C4A0.070 (2)0.0476 (12)0.0833 (17)−0.0082 (12)0.0021 (15)−0.0046 (12)
C5A0.079 (2)0.0593 (14)0.0676 (14)−0.0017 (13)0.0070 (14)0.0177 (12)
C6A0.099 (3)0.0823 (18)0.0509 (12)0.0069 (16)0.0040 (14)0.0130 (13)
C7A0.086 (3)0.0698 (16)0.0463 (12)0.0007 (14)−0.0053 (12)−0.0003 (11)
C8A0.069 (2)0.0491 (12)0.0426 (11)−0.0037 (10)0.0005 (11)−0.0051 (9)
C9A0.0486 (16)0.0471 (11)0.0408 (10)0.0002 (9)0.0054 (10)−0.0019 (9)
C10A0.0497 (17)0.0473 (12)0.0590 (12)−0.0006 (9)0.0060 (11)0.0004 (11)
O1B0.0602 (16)0.0916 (13)0.0584 (10)−0.0088 (10)0.0101 (9)−0.0125 (9)
N1B0.0553 (16)0.0495 (10)0.0418 (9)−0.0027 (8)0.0034 (9)−0.0025 (8)
C2B0.071 (2)0.0567 (13)0.0439 (11)−0.0008 (12)−0.0046 (12)−0.0036 (10)
C3B0.074 (2)0.0562 (14)0.0638 (15)−0.0020 (12)−0.0162 (14)0.0025 (11)
C4B0.0531 (19)0.0587 (14)0.0855 (18)0.0083 (12)0.0009 (15)0.0121 (13)
C5B0.089 (3)0.0870 (19)0.0769 (18)0.0294 (17)0.0379 (18)0.0192 (15)
C6B0.142 (4)0.086 (2)0.0537 (15)0.026 (2)0.0270 (18)0.0116 (14)
C7B0.136 (4)0.0739 (17)0.0454 (13)0.0120 (19)0.0020 (16)−0.0034 (13)
C8B0.081 (2)0.0520 (12)0.0446 (11)0.0045 (11)−0.0058 (12)−0.0046 (10)
C9B0.0632 (19)0.0377 (10)0.0416 (11)0.0064 (9)0.0042 (10)0.0016 (8)
C10B0.065 (2)0.0469 (12)0.0583 (13)0.0125 (11)0.0090 (12)0.0092 (10)
O20.0836 (19)0.0752 (12)0.0755 (11)0.0184 (10)0.0147 (11)0.0021 (9)
O1A—N1A1.310 (2)N1B—C2B1.353 (3)
N1A—C2A1.344 (3)N1B—C9B1.368 (3)
N1A—C9A1.373 (3)C2B—C3B1.352 (4)
C2A—C3A1.351 (3)C2B—H2B0.9300
C2A—H2A0.9300C3B—C4B1.375 (4)
C3A—C4A1.375 (4)C3B—H3B0.9300
C3A—H3A0.9300C4B—C10B1.390 (4)
C4A—C10A1.387 (4)C4B—H4B0.9300
C4A—H4A0.9300C5B—C10B1.514 (4)
C5A—C6A1.503 (4)C5B—C6B1.534 (5)
C5A—C10A1.514 (3)C5B—H51B0.9700
C5A—H51A0.9700C5B—H52B0.9700
C5A—H52A0.9700C6B—C7B1.462 (5)
C6A—C7A1.480 (4)C6B—H61B0.9700
C6A—H61A0.9700C6B—H62B0.9700
C6A—H62A0.9700C7B—C8B1.517 (4)
C7A—C8A1.517 (3)C7B—H71B0.9700
C7A—H71A0.9700C7B—H72B0.9700
C7A—H72A0.9700C8B—C9B1.484 (3)
C8A—C9A1.490 (3)C8B—H81B0.9700
C8A—H81A0.9700C8B—H82B0.9700
C8A—H82A0.9700C9B—C10B1.383 (4)
C9A—C10A1.376 (3)O2—H210.96 (3)
O1B—N1B1.308 (3)O2—H220.95 (4)
O1A—N1A—C2A119.72 (18)O1B—N1B—C9B119.0 (2)
O1A—N1A—C9A118.46 (17)C2B—N1B—C9B121.9 (2)
C2A—N1A—C9A121.83 (19)N1B—C2B—C3B120.1 (2)
N1A—C2A—C3A120.0 (2)N1B—C2B—H2B120.0
N1A—C2A—H2A120.0C3B—C2B—H2B120.0
C3A—C2A—H2A120.0C2B—C3B—C4B119.9 (3)
C2A—C3A—C4A119.6 (2)C2B—C3B—H3B120.0
C2A—C3A—H3A120.2C4B—C3B—H3B120.0
C4A—C3A—H3A120.2C3B—C4B—C10B120.3 (3)
C3A—C4A—C10A120.9 (2)C3B—C4B—H4B119.8
C3A—C4A—H4A119.5C10B—C4B—H4B119.8
C10A—C4A—H4A119.5C10B—C5B—C6B111.2 (3)
C6A—C5A—C10A112.75 (19)C10B—C5B—H51B109.4
C6A—C5A—H51A109.0C6B—C5B—H51B109.4
C10A—C5A—H51A109.0C10B—C5B—H52B109.4
C6A—C5A—H52A109.0C6B—C5B—H52B109.4
C10A—C5A—H52A109.0H51B—C5B—H52B108.0
H51A—C5A—H52A107.8C7B—C6B—C5B111.3 (3)
C7A—C6A—C5A111.5 (2)C7B—C6B—H61B109.4
C7A—C6A—H61A109.3C5B—C6B—H61B109.4
C5A—C6A—H61A109.3C7B—C6B—H62B109.4
C7A—C6A—H62A109.3C5B—C6B—H62B109.4
C5A—C6A—H62A109.3H61B—C6B—H62B108.0
H61A—C6A—H62A108.0C6B—C7B—C8B111.8 (2)
C6A—C7A—C8A112.3 (2)C6B—C7B—H71B109.3
C6A—C7A—H71A109.1C8B—C7B—H71B109.3
C8A—C7A—H71A109.1C6B—C7B—H72B109.3
C6A—C7A—H72A109.1C8B—C7B—H72B109.3
C8A—C7A—H72A109.1H71B—C7B—H72B107.9
H71A—C7A—H72A107.9C9B—C8B—C7B113.5 (3)
C9A—C8A—C7A113.33 (19)C9B—C8B—H81B108.9
C9A—C8A—H81A108.9C7B—C8B—H81B108.9
C7A—C8A—H81A108.9C9B—C8B—H82B108.9
C9A—C8A—H82A108.9C7B—C8B—H82B108.9
C7A—C8A—H82A108.9H81B—C8B—H82B107.7
H81A—C8A—H82A107.7N1B—C9B—C10B118.9 (2)
N1A—C9A—C10A119.28 (19)N1B—C9B—C8B116.3 (2)
N1A—C9A—C8A116.81 (18)C10B—C9B—C8B124.7 (2)
C10A—C9A—C8A123.91 (19)C9B—C10B—C4B118.9 (2)
C9A—C10A—C4A118.3 (2)C9B—C10B—C5B118.9 (3)
C9A—C10A—C5A119.6 (2)C4B—C10B—C5B122.2 (3)
C4A—C10A—C5A122.1 (2)H21—O2—H22102 (3)
O1B—N1B—C2B119.10 (19)
O1A—N1A—C2A—C3A178.4 (2)O1B—N1B—C2B—C3B179.9 (2)
C9A—N1A—C2A—C3A−2.0 (4)C9B—N1B—C2B—C3B−0.2 (3)
N1A—C2A—C3A—C4A0.9 (4)N1B—C2B—C3B—C4B0.4 (4)
C2A—C3A—C4A—C10A0.3 (4)C2B—C3B—C4B—C10B−0.5 (4)
C10A—C5A—C6A—C7A49.6 (3)C10B—C5B—C6B—C7B52.8 (3)
C5A—C6A—C7A—C8A−59.9 (3)C5B—C6B—C7B—C8B−61.4 (3)
C6A—C7A—C8A—C9A38.5 (3)C6B—C7B—C8B—C9B37.8 (3)
O1A—N1A—C9A—C10A−178.6 (2)O1B—N1B—C9B—C10B−179.94 (19)
C2A—N1A—C9A—C10A1.7 (4)C2B—N1B—C9B—C10B0.1 (3)
O1A—N1A—C9A—C8A0.5 (3)O1B—N1B—C9B—C8B−1.3 (3)
C2A—N1A—C9A—C8A−179.2 (2)C2B—N1B—C9B—C8B178.68 (18)
C7A—C8A—C9A—N1A172.3 (2)C7B—C8B—C9B—N1B174.06 (19)
C7A—C8A—C9A—C10A−8.7 (4)C7B—C8B—C9B—C10B−7.4 (3)
N1A—C9A—C10A—C4A−0.5 (4)N1B—C9B—C10B—C4B−0.2 (3)
C8A—C9A—C10A—C4A−179.5 (2)C8B—C9B—C10B—C4B−178.7 (2)
N1A—C9A—C10A—C5A178.5 (2)N1B—C9B—C10B—C5B178.77 (19)
C8A—C9A—C10A—C5A−0.6 (4)C8B—C9B—C10B—C5B0.3 (3)
C3A—C4A—C10A—C9A−0.5 (4)C3B—C4B—C10B—C9B0.4 (3)
C3A—C4A—C10A—C5A−179.4 (3)C3B—C4B—C10B—C5B−178.5 (2)
C6A—C5A—C10A—C9A−19.7 (4)C6B—C5B—C10B—C9B−22.2 (3)
C6A—C5A—C10A—C4A159.2 (3)C6B—C5B—C10B—C4B156.8 (3)
D—H···AD—HH···AD···AD—H···A
O2—H21···O1A0.96 (3)1.87 (3)2.825 (3)170 (3)
O2—H22···O1B0.95 (4)1.86 (3)2.799 (3)170 (3)
C2B—H2B···O1A0.932.533.454 (3)171
C3A—H3A···O2i0.932.503.392 (3)160
C3B—H3B···O2ii0.932.563.342 (4)142
C5A—H52A···O1Biii0.972.493.383 (4)153
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O2—H21⋯O1A0.96 (3)1.87 (3)2.825 (3)170 (3)
O2—H22⋯O1B0.95 (4)1.86 (3)2.799 (3)170 (3)
C2B—H2B⋯O1A0.932.533.454 (3)171
C3A—H3A⋯O2i0.932.503.392 (3)160
C3B—H3B⋯O2ii0.932.563.342 (4)142
C5A—H52A⋯O1Biii0.972.493.383 (4)153

Symmetry codes: (i) ; (ii) ; (iii) .

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Authors:  J Kent Barbay; Yong Gong; Mieke Buntinx; Jian Li; Concha Claes; Pamela J Hornby; Guy Van Lommen; Jean Van Wauwe; Wei He
Journal:  Bioorg Med Chem Lett       Date:  2008-03-20       Impact factor: 2.823

6.  1-imidazolyl(alkyl)-substituted di- and tetrahydroquinolines and analogues: syntheses and evaluation of dual inhibitors of thromboxane A(2) synthase and aromatase.

Authors:  C Jacobs; M Frotscher; G Dannhardt; R W Hartmann
Journal:  J Med Chem       Date:  2000-05-04       Impact factor: 7.446

7.  Metal complexes of cinchonine as chiral building blocks: a strategy for the construction of nanotubular architectures and helical coordination polymers.

Authors:  Tomasz Kaczorowski; Iwona Justyniak; Teodozja Lipińska; Janusz Lipkowski; Janusz Lewiński
Journal:  J Am Chem Soc       Date:  2009-04-22       Impact factor: 15.419

8.  Synthesis, docking studies and anti-inflammatory activity of some 2-amino-5,6,7,8-tetrahydroquinoline-3-carbonitriles and related compounds.

Authors:  O I Abd El-Salam; D A Abou El Ella; N S M Ismail; M Abdullah
Journal:  Pharmazie       Date:  2009-03       Impact factor: 1.267

9.  Synthesis and antiinflammatory activity of certain 5,6,7,8-tetrahydroquinolines and related compounds.

Authors:  W Calhoun; R P Carlson; R Crossley; L J Datko; S Dietrich; K Heatherington; L A Marshall; P J Meade; A Opalko; R G Shepherd
Journal:  J Med Chem       Date:  1995-04-28       Impact factor: 7.446

  9 in total
  1 in total

1.  5,6,7,8-Tetra-hydro-quinolin-8-one.

Authors:  Teodozja M Lipińska; Zbigniew Karczmarzyk; Waldemar Wysocki; Ewa Gruba; Andrzej Fruziński
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-05-07
  1 in total

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