Literature DB >> 21580509

Bis{N-[5-(4-methoxy-phen-yl)-1,3,4-oxa-diazol-2-yl]ethanimidamidato}copper(II).

Yacine Djebli, Salima Mosbah, Sihem Boufas, Leila Bencharif, Thierry Roisnel.   

Abstract

The title compound, [Cu(C(11)H(11)N(4)O(2))(2)], was prepared by solvothermal synthesis using 2-amino-5-(4-methoxy-phen-yl)-1,3,4-oxadiazole and copper sulfate penta-hydrate in an acetonitrile solution. The Cu(II) atom lies on an inversion center and is four-coordinated in a slightly distorted square-planar geometry by four N atoms of the ligands obtained from the formation of a bond between the amine N atom of the oxadiazole mol-ecule and the nitrile C atom of the solvent. In the crystal structure an inter-molecular N-H⋯N hydrogen bond links inversion-related mol-ecules.

Entities:  

Year:  2010        PMID: 21580509      PMCID: PMC2984065          DOI: 10.1107/S1600536810009050

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For comparative bond lengths in similar coordination compounds, see: Cai, (2009 ▶). For applications of complexes formed by Schiff base ligands, see: Lu & Schauss (2002 ▶). For chemotherapeutic effects of 2,5-substituted-1,3,4-oxadiazole derivatives, see: Cao et al. (2002 ▶); Kadi et al. (2007 ▶); Zareef et al. (2006 ▶, 2007 ▶, 2008 ▶).

Experimental

Crystal data

[Cu(C11H11N4O2)2] M = 526.02 Triclinic, a = 4.9020 (6) Å b = 11.2083 (14) Å c = 11.5739 (14) Å α = 111.501 (5)° β = 99.274 (6)° γ = 91.564 (5)° V = 581.33 (12) Å3 Z = 1 Mo Kα radiation μ = 0.99 mm−1 T = 120 K 0.53 × 0.23 × 0.07 mm

Data collection

Bruker APEX diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2002 ▶) T min = 0.707, T max = 0.933 6654 measured reflections 2633 independent reflections 2417 reflections with I > 2σ(I) R int = 0.035

Refinement

R[F 2 > 2σ(F 2)] = 0.037 wR(F 2) = 0.087 S = 1.06 2633 reflections 166 parameters H-atom parameters constrained Δρmax = 0.42 e Å−3 Δρmin = −0.29 e Å−3 Data collection: SMART (Bruker, 2002 ▶); cell refinement: SAINT (Bruker, 2002 ▶); data reduction: SAINT; program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810009050/pk2228sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810009050/pk2228Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cu(C11H11N4O2)2]Z = 1
Mr = 526.02F(000) = 271
Triclinic, P1Dx = 1.503 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 4.9020 (6) ÅCell parameters from 2925 reflections
b = 11.2083 (14) Åθ = 3.2–27.4°
c = 11.5739 (14) ŵ = 0.99 mm1
α = 111.501 (5)°T = 120 K
β = 99.274 (6)°Plate, brown
γ = 91.564 (5)°0.53 × 0.23 × 0.07 mm
V = 581.33 (12) Å3
Bruker APEXII diffractometer2633 independent reflections
Radiation source: Enraf-Nonius FR5902417 reflections with I > 2σ(I)
graphiteRint = 0.035
CCD rotation images, thin slices scansθmax = 27.5°, θmin = 3.2°
Absorption correction: multi-scan (SADABS; Sheldrick, 2002)h = −6→6
Tmin = 0.707, Tmax = 0.933k = −14→14
6654 measured reflectionsl = −15→15
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.037Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.087H-atom parameters constrained
S = 1.06w = 1/[σ2(Fo2) + (0.0355P)2 + 0.2373P] where P = (Fo2 + 2Fc2)/3
2633 reflections(Δ/σ)max < 0.001
166 parametersΔρmax = 0.42 e Å3
0 restraintsΔρmin = −0.29 e Å3
xyzUiso*/Ueq
Cu1000.50.02231 (12)
N10.1428 (3)−0.09664 (16)0.34848 (16)0.0245 (4)
H10.0696−0.17690.30980.029*
C20.3294 (4)−0.06281 (19)0.29405 (19)0.0240 (4)
C30.3968 (5)−0.1574 (2)0.1722 (2)0.0314 (5)
H3A0.3138−0.24380.15620.047*
H3B0.5986−0.15810.17940.047*
H3C0.3216−0.13140.10210.047*
N40.4749 (3)0.05335 (16)0.33696 (16)0.0255 (4)
C50.4203 (4)0.14395 (19)0.44061 (19)0.0229 (4)
N60.2379 (3)0.14792 (15)0.51450 (16)0.0230 (4)
O70.5775 (3)0.26005 (13)0.48592 (13)0.0244 (3)
N80.2771 (3)0.26958 (16)0.61315 (17)0.0257 (4)
C90.4788 (4)0.33114 (19)0.59302 (19)0.0234 (4)
C100.6076 (4)0.46056 (19)0.6693 (2)0.0251 (4)
C110.5447 (5)0.5265 (2)0.7888 (2)0.0368 (5)
H110.4170.48650.82020.044*
C120.6665 (5)0.6494 (2)0.8615 (2)0.0385 (6)
H120.62390.69310.94290.046*
C130.8519 (4)0.70962 (19)0.8158 (2)0.0266 (4)
C140.9179 (5)0.6449 (2)0.6975 (2)0.0309 (5)
H141.04550.68490.66610.037*
C150.7950 (5)0.5211 (2)0.6259 (2)0.0321 (5)
H150.84040.47670.54520.038*
O160.9576 (3)0.83100 (14)0.89471 (14)0.0336 (4)
C171.1494 (5)0.8972 (2)0.8518 (2)0.0321 (5)
H17A1.31380.84960.83840.048*
H17B1.2050.98410.91540.048*
H17C1.06010.9030.77220.048*
U11U22U33U12U13U23
Cu10.02216 (19)0.01886 (19)0.0244 (2)−0.00107 (13)0.00942 (14)0.00450 (14)
N10.0251 (8)0.0203 (8)0.0251 (9)−0.0016 (6)0.0080 (7)0.0039 (7)
C20.0251 (10)0.0244 (10)0.0225 (10)0.0037 (8)0.0058 (8)0.0083 (8)
C30.0365 (12)0.0275 (11)0.0263 (11)−0.0012 (9)0.0110 (9)0.0039 (9)
N40.0290 (9)0.0231 (9)0.0238 (9)−0.0008 (7)0.0106 (7)0.0057 (7)
C50.0225 (9)0.0206 (10)0.0261 (10)−0.0003 (7)0.0048 (8)0.0094 (8)
N60.0233 (8)0.0199 (8)0.0238 (8)0.0002 (6)0.0094 (7)0.0040 (7)
O70.0277 (7)0.0197 (7)0.0247 (7)−0.0024 (5)0.0093 (6)0.0056 (6)
N80.0266 (9)0.0187 (8)0.0279 (9)−0.0001 (7)0.0097 (7)0.0027 (7)
C90.0247 (10)0.0208 (10)0.0243 (10)0.0022 (8)0.0081 (8)0.0064 (8)
C100.0257 (10)0.0203 (10)0.0274 (11)0.0015 (8)0.0068 (8)0.0060 (8)
C110.0446 (13)0.0299 (12)0.0344 (12)−0.0070 (10)0.0200 (11)0.0061 (10)
C120.0540 (15)0.0298 (12)0.0281 (12)−0.0058 (10)0.0201 (11)0.0021 (10)
C130.0294 (10)0.0205 (10)0.0265 (10)−0.0013 (8)0.0053 (9)0.0053 (8)
C140.0354 (12)0.0251 (11)0.0305 (11)−0.0060 (9)0.0127 (9)0.0061 (9)
C150.0397 (12)0.0252 (11)0.0257 (11)−0.0046 (9)0.0157 (9)−0.0004 (9)
O160.0432 (9)0.0231 (8)0.0287 (8)−0.0081 (6)0.0108 (7)0.0021 (6)
C170.0365 (12)0.0225 (11)0.0343 (12)−0.0059 (9)0.0070 (10)0.0075 (9)
Cu1—N6i1.9403 (16)C9—C101.454 (3)
Cu1—N61.9403 (16)C10—C151.386 (3)
Cu1—N1i1.9451 (17)C10—C111.398 (3)
Cu1—N11.9451 (17)C11—C121.380 (3)
N1—C21.311 (3)C11—H110.95
N1—H10.88C12—C131.394 (3)
C2—N41.346 (3)C12—H120.95
C2—C31.515 (3)C13—O161.361 (2)
C3—H3A0.98C13—C141.390 (3)
C3—H3B0.98C14—C151.388 (3)
C3—H3C0.98C14—H140.95
N4—C51.329 (3)C15—H150.95
C5—N61.324 (3)O16—C171.436 (3)
C5—O71.370 (2)C17—H17A0.98
N6—N81.405 (2)C17—H17B0.98
O7—C91.377 (2)C17—H17C0.98
N8—C91.289 (2)
N6i—Cu1—N6180.00 (6)N8—C9—C10127.92 (19)
N6i—Cu1—N1i87.39 (7)O7—C9—C10119.18 (17)
N6—Cu1—N1i92.61 (7)C15—C10—C11118.54 (19)
N6i—Cu1—N192.61 (7)C15—C10—C9121.09 (19)
N6—Cu1—N187.39 (7)C11—C10—C9120.36 (19)
N1i—Cu1—N1180C12—C11—C10120.5 (2)
C2—N1—Cu1131.13 (14)C12—C11—H11119.7
C2—N1—H1114.4C10—C11—H11119.7
Cu1—N1—H1114.4C11—C12—C13120.2 (2)
N1—C2—N4125.48 (18)C11—C12—H12119.9
N1—C2—C3120.38 (18)C13—C12—H12119.9
N4—C2—C3114.13 (17)O16—C13—C14124.78 (19)
C2—C3—H3A109.5O16—C13—C12115.32 (19)
C2—C3—H3B109.5C14—C13—C12119.90 (19)
H3A—C3—H3B109.5C15—C14—C13119.2 (2)
C2—C3—H3C109.5C15—C14—H14120.4
H3A—C3—H3C109.5C13—C14—H14120.4
H3B—C3—H3C109.5C10—C15—C14121.6 (2)
C5—N4—C2118.09 (17)C10—C15—H15119.2
N6—C5—N4133.31 (18)C14—C15—H15119.2
N6—C5—O7109.26 (17)C13—O16—C17117.41 (17)
N4—C5—O7117.43 (17)O16—C17—H17A109.5
C5—N6—N8108.50 (16)O16—C17—H17B109.5
C5—N6—Cu1124.23 (14)H17A—C17—H17B109.5
N8—N6—Cu1126.65 (13)O16—C17—H17C109.5
C5—O7—C9104.03 (14)H17A—C17—H17C109.5
C9—N8—N6105.28 (16)H17B—C17—H17C109.5
N8—C9—O7112.90 (17)
N6i—Cu1—N1—C2−177.96 (19)N6—N8—C9—O70.9 (2)
N6—Cu1—N1—C22.04 (19)N6—N8—C9—C10−178.20 (19)
Cu1—N1—C2—N41.8 (3)C5—O7—C9—N8−1.4 (2)
Cu1—N1—C2—C3−178.05 (14)C5—O7—C9—C10177.76 (17)
N1—C2—N4—C5−2.6 (3)N8—C9—C10—C15−170.3 (2)
C3—C2—N4—C5177.23 (17)O7—C9—C10—C1510.7 (3)
C2—N4—C5—N6−2.5 (3)N8—C9—C10—C119.8 (3)
C2—N4—C5—O7177.53 (17)O7—C9—C10—C11−169.16 (19)
N4—C5—N6—N8179.1 (2)C15—C10—C11—C120.2 (4)
O7—C5—N6—N8−0.9 (2)C9—C10—C11—C12180.0 (2)
N4—C5—N6—Cu17.6 (3)C10—C11—C12—C130.7 (4)
O7—C5—N6—Cu1−172.39 (12)C11—C12—C13—O16179.4 (2)
N1i—Cu1—N6—C5174.14 (16)C11—C12—C13—C14−1.1 (4)
N1—Cu1—N6—C5−5.86 (16)O16—C13—C14—C15−179.9 (2)
N1i—Cu1—N6—N84.22 (16)C12—C13—C14—C150.6 (3)
N1—Cu1—N6—N8−175.78 (16)C11—C10—C15—C14−0.6 (3)
N6—C5—O7—C91.4 (2)C9—C10—C15—C14179.6 (2)
N4—C5—O7—C9−178.66 (17)C13—C14—C15—C100.2 (4)
C5—N6—N8—C90.0 (2)C14—C13—O16—C170.6 (3)
Cu1—N6—N8—C9171.26 (14)C12—C13—O16—C17−179.9 (2)
D—H···AD—HH···AD···AD—H···A
N1—H1···N8i0.882.422.983 (2)123
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯N8i0.882.422.983 (2)123

Symmetry code: (i) .

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