Literature DB >> 21202126

Ethyl 2-(5-phenyl-1,3,4-oxadiazol-2-ylsulfan-yl)acetate.

Muhammad Zareef, Rashid Iqbal, Muhammad Arfan, Masood Parvez.   

Abstract

The title mol-ecule, C(12)H(12)N(2)O(3)S, is composed of two individually planar units, viz. 5-phenyl-1,3,4-oxadiazol-2-yl-sulfanyl and ethyl acetate, which are oriented at almost right angles [80.07 (8)°] with respect to each other. The structure is stabilized by weak inter-molecular C-H⋯O and C-H⋯N hydrogen bonds. The phenyl and oxadiazole rings show π-π stacking inter-actions [centroid-centroid distance = 3.846 (2) Å] and there is also a short π-inter-action between the carbonyl O atom and the oxadiazole ring [the distance from this O atom to the centroid of the oxadiazole ring is 3.156 (2) Å].

Entities:  

Year:  2008        PMID: 21202126      PMCID: PMC2961061          DOI: 10.1107/S1600536808007125

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature, see: Cao et al. (2002 ▶); Iqbal et al. (2007 ▶); Kadi et al. (2007 ▶); Mir & Siddiqui (1970 ▶); Zareef et al. (2006 ▶, 2007 ▶).

Experimental

Crystal data

C12H12N2O3S M = 264.30 Monoclinic, a = 8.777 (3) Å b = 11.008 (5) Å c = 13.177 (6) Å β = 103.59 (3)° V = 1237.5 (9) Å3 Z = 4 Mo Kα radiation μ = 0.26 mm−1 T = 173 (2) K 0.16 × 0.10 × 0.08 mm

Data collection

Nonius KappaCCD diffractometer Absorption correction: multi-scan (SORTAV; Blessing, 1997 ▶) T min = 0.959, T max = 0.979 5263 measured reflections 2820 independent reflections 1943 reflections with I > 2σ(I) R int = 0.046

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.117 S = 1.02 2820 reflections 165 parameters H-atom parameters constrained Δρmax = 0.25 e Å−3 Δρmin = −0.27 e Å−3 Data collection: COLLECT (Hooft, 1998 ▶); cell refinement: DENZO (Otwinowski & Minor, 1997 ▶); data reduction: SCALEPACK (Otwinowski & Minor, 1997 ▶); program(s) used to solve structure: SAPI91 (Fan, 1991 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808007125/fb2092sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808007125/fb2092Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H12N2O3SF000 = 552
Mr = 264.30Dx = 1.419 Mg m3
Monoclinic, P21/cMelting point = 344–345 K
Hall symbol: -P 2ybcMo Kα radiation λ = 0.71073 Å
a = 8.777 (3) ÅCell parameters from 5263 reflections
b = 11.008 (5) Åθ = 3.7–27.5º
c = 13.177 (6) ŵ = 0.26 mm1
β = 103.59 (3)ºT = 173 (2) K
V = 1237.5 (9) Å3Prism, colourless
Z = 40.16 × 0.10 × 0.08 mm
Nonius KappaCCD diffractometer2820 independent reflections
Radiation source: fine-focus sealed tube1943 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.046
T = 173(2) Kθmax = 27.5º
ω and φ scansθmin = 3.7º
Absorption correction: multi-scan(SORTAV; Blessing, 1997)h = −11→11
Tmin = 0.959, Tmax = 0.979k = −13→14
5263 measured reflectionsl = −17→17
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.045H-atom parameters constrained
wR(F2) = 0.117  w = 1/[σ2(Fo2) + (0.058P)2 + 0.1P] where P = (Fo2 + 2Fc2)/3
S = 1.02(Δ/σ)max = 0.001
2820 reflectionsΔρmax = 0.25 e Å3
165 parametersΔρmin = −0.27 e Å3
47 constraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.021 (3)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
S10.76489 (6)0.36024 (5)0.69782 (4)0.0336 (2)
O10.67313 (14)0.20172 (11)0.54296 (10)0.0264 (3)
O20.86894 (16)0.19182 (14)0.88791 (12)0.0412 (4)
O31.12555 (15)0.22664 (13)0.90282 (11)0.0354 (4)
N10.87361 (18)0.07562 (15)0.55872 (13)0.0307 (4)
N20.91309 (18)0.16477 (15)0.63754 (13)0.0319 (4)
C10.6404 (2)0.03494 (16)0.41660 (14)0.0245 (4)
C20.7088 (2)−0.06503 (17)0.37915 (15)0.0283 (5)
H20.8131−0.08820.41160.034*
C30.6246 (2)−0.13002 (18)0.29499 (16)0.0339 (5)
H30.6717−0.19720.26900.041*
C40.4712 (2)−0.09762 (19)0.24806 (16)0.0335 (5)
H40.4130−0.14290.19050.040*
C50.4040 (2)0.0005 (2)0.28557 (16)0.0342 (5)
H50.29910.02250.25340.041*
C60.4870 (2)0.06791 (19)0.36949 (15)0.0291 (5)
H60.43970.13570.39450.035*
C70.7333 (2)0.10069 (16)0.50595 (15)0.0245 (4)
C80.7925 (2)0.23515 (17)0.62486 (15)0.0266 (4)
C90.9529 (2)0.35400 (18)0.78938 (17)0.0337 (5)
H9A1.03580.34990.74980.040*
H9B0.96840.43020.83040.040*
C100.9730 (2)0.24772 (19)0.86414 (16)0.0311 (5)
C111.1623 (2)0.1290 (2)0.97896 (17)0.0392 (6)
H11A1.11050.05280.94920.047*
H11B1.12520.14981.04220.047*
C121.3366 (2)0.1135 (2)1.00597 (17)0.0421 (6)
H12A1.36550.04661.05580.051*
H12B1.38640.18871.03730.051*
H12C1.37220.09520.94250.051*
U11U22U33U12U13U23
S10.0300 (3)0.0316 (3)0.0369 (3)0.0048 (2)0.0031 (2)−0.0069 (2)
O10.0232 (7)0.0275 (7)0.0273 (7)0.0048 (6)0.0037 (5)−0.0008 (6)
O20.0280 (7)0.0554 (10)0.0392 (9)−0.0054 (7)0.0056 (7)−0.0009 (8)
O30.0235 (7)0.0397 (8)0.0407 (9)0.0003 (6)0.0026 (6)0.0013 (7)
N10.0292 (8)0.0333 (10)0.0278 (9)0.0061 (7)0.0031 (7)−0.0055 (8)
N20.0279 (9)0.0354 (10)0.0308 (10)0.0070 (8)0.0038 (7)−0.0050 (8)
C10.0265 (9)0.0261 (10)0.0219 (10)−0.0015 (8)0.0074 (8)0.0045 (8)
C20.0275 (10)0.0286 (10)0.0288 (11)0.0000 (9)0.0066 (8)0.0020 (9)
C30.0403 (12)0.0296 (11)0.0327 (12)−0.0022 (10)0.0103 (9)−0.0023 (9)
C40.0349 (11)0.0373 (12)0.0278 (11)−0.0128 (10)0.0061 (9)−0.0010 (9)
C50.0250 (10)0.0473 (13)0.0286 (11)−0.0036 (10)0.0031 (9)0.0057 (10)
C60.0265 (10)0.0354 (11)0.0264 (11)0.0028 (9)0.0085 (8)0.0044 (9)
C70.0241 (9)0.0235 (10)0.0278 (10)0.0056 (8)0.0101 (8)0.0034 (8)
C80.0243 (9)0.0283 (10)0.0267 (10)0.0011 (9)0.0050 (8)0.0005 (8)
C90.0269 (10)0.0336 (11)0.0382 (12)−0.0033 (9)0.0027 (9)−0.0088 (9)
C100.0241 (10)0.0381 (12)0.0300 (11)−0.0027 (9)0.0040 (8)−0.0111 (9)
C110.0353 (11)0.0437 (14)0.0387 (13)0.0012 (10)0.0089 (10)0.0031 (10)
C120.0356 (12)0.0534 (15)0.0360 (13)0.0066 (11)0.0056 (10)0.0033 (11)
S1—C81.729 (2)C3—H30.9500
S1—C91.802 (2)C4—C51.377 (3)
O1—C81.366 (2)C4—H40.9500
O1—C71.369 (2)C5—C61.387 (3)
O2—C101.202 (2)C5—H50.9500
O3—C101.336 (2)C6—H60.9500
O3—C111.454 (3)C9—C101.513 (3)
N1—C71.294 (2)C9—H9A0.9900
N1—N21.412 (2)C9—H9B0.9900
N2—C81.291 (2)C11—C121.497 (3)
C1—C61.392 (2)C11—H11A0.9900
C1—C21.398 (3)C11—H11B0.9900
C1—C71.457 (3)C12—H12A0.9800
C2—C31.379 (3)C12—H12B0.9800
C2—H20.9500C12—H12C0.9800
C3—C41.390 (3)
C8—S1—C996.66 (9)O1—C7—C1120.13 (15)
C8—O1—C7102.24 (13)N2—C8—O1113.20 (17)
C10—O3—C11115.56 (16)N2—C8—S1128.61 (15)
C7—N1—N2106.58 (15)O1—C8—S1118.18 (13)
C8—N2—N1105.66 (15)C10—C9—S1114.43 (14)
C6—C1—C2119.91 (17)C10—C9—H9A108.7
C6—C1—C7121.99 (18)S1—C9—H9A108.7
C2—C1—C7118.10 (16)C10—C9—H9B108.7
C3—C2—C1119.90 (18)S1—C9—H9B108.7
C3—C2—H2120.0H9A—C9—H9B107.6
C1—C2—H2120.0O2—C10—O3124.49 (19)
C2—C3—C4120.3 (2)O2—C10—C9125.87 (18)
C2—C3—H3119.8O3—C10—C9109.62 (17)
C4—C3—H3119.8O3—C11—C12107.26 (18)
C5—C4—C3119.56 (18)O3—C11—H11A110.3
C5—C4—H4120.2C12—C11—H11A110.3
C3—C4—H4120.2O3—C11—H11B110.3
C4—C5—C6121.14 (18)C12—C11—H11B110.3
C4—C5—H5119.4H11A—C11—H11B108.5
C6—C5—H5119.4C11—C12—H12A109.5
C5—C6—C1119.2 (2)C11—C12—H12B109.5
C5—C6—H6120.4H12A—C12—H12B109.5
C1—C6—H6120.4C11—C12—H12C109.5
N1—C7—O1112.32 (16)H12A—C12—H12C109.5
N1—C7—C1127.55 (18)H12B—C12—H12C109.5
C7—N1—N2—C80.1 (2)C6—C1—C7—O1−3.2 (3)
C6—C1—C2—C30.6 (3)C2—C1—C7—O1177.68 (16)
C7—C1—C2—C3179.73 (18)N1—N2—C8—O1−0.3 (2)
C1—C2—C3—C4−0.9 (3)N1—N2—C8—S1178.66 (15)
C2—C3—C4—C50.5 (3)C7—O1—C8—N20.4 (2)
C3—C4—C5—C60.1 (3)C7—O1—C8—S1−178.68 (14)
C4—C5—C6—C1−0.3 (3)C9—S1—C8—N20.1 (2)
C2—C1—C6—C50.0 (3)C9—S1—C8—O1179.01 (15)
C7—C1—C6—C5−179.09 (18)C8—S1—C9—C10−69.82 (17)
N2—N1—C7—O10.2 (2)C11—O3—C10—O2−0.3 (3)
N2—N1—C7—C1−179.84 (18)C11—O3—C10—C9177.96 (16)
C8—O1—C7—N1−0.4 (2)S1—C9—C10—O2−22.7 (3)
C8—O1—C7—C1179.66 (16)S1—C9—C10—O3159.06 (14)
C6—C1—C7—N1176.80 (19)C10—O3—C11—C12175.61 (18)
C2—C1—C7—N1−2.3 (3)
D—H···AD—HH···AD···AD—H···A
C4—H4···O2i0.952.513.268 (3)137
C9—H9B···N1ii0.992.383.293 (3)153
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C4—H4⋯O2i0.952.513.268 (3)137
C9—H9B⋯N1ii0.992.383.293 (3)153

Symmetry codes: (i) ; (ii) .

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