Literature DB >> 21580417

Ethyl-enediaminium hemioxalate thio-cyanate.

Leila Narimani1, Bohari M Yamin.   

Abstract

In the title compound, C(2)H(10)N(2) (2+)·0.5(C(2)O(4))(2-)·NCS(-), the ethyl-enediaminium dication adopts a (+)-synclinal conformation with an N-C-C-N torsion angle of 62.64 (15)°. The oxalate dianion lies across an inversion centre. In the crystal structure, the ions are linked through N-H⋯N, N-H⋯O and C-H⋯S hydrogen bonds, leading to the formation of a three-dimensional network.

Entities:  

Year:  2010        PMID: 21580417      PMCID: PMC2983662          DOI: 10.1107/S1600536810005994

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Barnes et al. (1998 ▶); Smith et al. (2006 ▶); Seidel et al. (2008 ▶); Tang et al. (2009 ▶). For bond-length data, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C2H10N2 2+·0.5C2O4 2−·NCS− M = 164.21 Triclinic, a = 6.4044 (19) Å b = 6.6199 (19) Å c = 9.377 (3) Å α = 80.799 (5)° β = 81.179 (5)° γ = 74.452 (5)° V = 375.5 (2) Å3 Z = 2 Mo Kα radiation μ = 0.38 mm−1 T = 298 K 0.43 × 0.41 × 0.35 mm

Data collection

Bruker SMART APEX CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.854, T max = 0.879 5091 measured reflections 1867 independent reflections 1718 reflections with I > 2σ(I) R int = 0.017

Refinement

R[F 2 > 2σ(F 2)] = 0.034 wR(F 2) = 0.095 S = 1.06 1867 reflections 94 parameters H-atom parameters constrained Δρmax = 0.51 e Å−3 Δρmin = −0.52 e Å−3 Data collection: SMART (Siemens, 1996 ▶); cell refinement: SAINT (Siemens, 1996 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL software used to prepare material for publication: SHELXTL, PARST (Nardelli, 1995 ▶) and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810005994/ci5031sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810005994/ci5031Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C2H10N22+·0.5C2O42·NCSZ = 2
Mr = 164.21F(000) = 174
Triclinic, P1Dx = 1.452 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 6.4044 (19) ÅCell parameters from 3525 reflections
b = 6.6199 (19) Åθ = 2.2–28.3°
c = 9.377 (3) ŵ = 0.38 mm1
α = 80.799 (5)°T = 298 K
β = 81.179 (5)°Block, colourless
γ = 74.452 (5)°0.43 × 0.41 × 0.35 mm
V = 375.5 (2) Å3
Bruker SMART APEX CCD area-detector diffractometer1867 independent reflections
Radiation source: fine-focus sealed tube1718 reflections with I > 2σ(I)
graphiteRint = 0.017
Detector resolution: 83.66 pixels mm-1θmax = 28.3°, θmin = 2.2°
ω scanh = −8→8
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)k = −8→8
Tmin = 0.854, Tmax = 0.879l = −12→12
5091 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.034H-atom parameters constrained
wR(F2) = 0.095w = 1/[σ2(Fo2) + (0.0453P)2 + 0.1426P] where P = (Fo2 + 2Fc2)/3
S = 1.06(Δ/σ)max = 0.001
1867 reflectionsΔρmax = 0.51 e Å3
94 parametersΔρmin = −0.52 e Å3
0 restraintsExtinction correction: SHELXL97, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.41 (2)
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.23176 (14)0.09074 (15)0.45456 (11)0.0325 (2)
O20.41295 (15)0.23958 (14)0.57426 (10)0.0309 (2)
C10.39758 (18)0.09557 (17)0.50846 (12)0.0232 (2)
S10.76420 (7)0.30131 (6)0.20864 (5)0.04886 (18)
N10.7143 (2)0.7005 (2)0.04926 (17)0.0521 (4)
C20.7374 (2)0.5334 (2)0.11335 (15)0.0362 (3)
N20.2850 (2)0.94792 (18)0.17891 (12)0.0346 (3)
H2A0.24771.06050.11350.041*
H2B0.41900.87360.15130.041*
H2C0.28190.98980.26500.041*
N30.18949 (17)0.64628 (17)0.44290 (12)0.0287 (2)
H3A0.22410.52230.49810.034*
H3B0.05740.71880.47600.034*
H3C0.28680.71910.44600.034*
C30.1898 (2)0.6105 (2)0.29020 (15)0.0316 (3)
H3D0.08770.52640.28810.038*
H3E0.33400.53110.25480.038*
C40.1284 (2)0.8139 (2)0.19058 (15)0.0356 (3)
H4A0.12130.78130.09450.043*
H4B−0.01570.89320.22620.043*
U11U22U33U12U13U23
O10.0227 (4)0.0324 (5)0.0425 (5)−0.0015 (3)−0.0087 (4)−0.0100 (4)
O20.0302 (5)0.0241 (4)0.0388 (5)−0.0025 (3)−0.0072 (4)−0.0091 (4)
C10.0220 (5)0.0207 (5)0.0251 (5)−0.0035 (4)−0.0018 (4)−0.0013 (4)
S10.0510 (3)0.0346 (2)0.0483 (3)0.00328 (17)0.00029 (18)0.00231 (16)
N10.0485 (8)0.0464 (8)0.0511 (8)−0.0062 (6)−0.0010 (6)0.0098 (6)
C20.0303 (6)0.0399 (7)0.0327 (7)−0.0011 (5)−0.0009 (5)−0.0037 (5)
N20.0409 (6)0.0288 (5)0.0300 (5)−0.0051 (5)−0.0044 (4)0.0023 (4)
N30.0267 (5)0.0258 (5)0.0341 (6)−0.0077 (4)−0.0060 (4)−0.0002 (4)
C30.0323 (6)0.0261 (6)0.0353 (7)−0.0050 (5)−0.0018 (5)−0.0067 (5)
C40.0396 (7)0.0336 (7)0.0332 (7)−0.0053 (5)−0.0116 (5)−0.0031 (5)
O1—C11.2539 (15)N3—C31.4879 (18)
O2—C11.2474 (15)N3—H3A0.89
C1—C1i1.568 (2)N3—H3B0.89
S1—C21.6295 (16)N3—H3C0.89
N1—C21.155 (2)C3—C41.5054 (19)
N2—C41.4890 (19)C3—H3D0.97
N2—H2A0.89C3—H3E0.97
N2—H2B0.89C4—H4A0.97
N2—H2C0.89C4—H4B0.97
O2—C1—O1125.46 (11)H3A—N3—H3C109.5
O2—C1—C1i117.42 (13)H3B—N3—H3C109.5
O1—C1—C1i117.12 (13)N3—C3—C4112.50 (11)
N1—C2—S1177.95 (14)N3—C3—H3D109.1
C4—N2—H2A109.5C4—C3—H3D109.1
C4—N2—H2B109.5N3—C3—H3E109.1
H2A—N2—H2B109.5C4—C3—H3E109.1
C4—N2—H2C109.5H3D—C3—H3E107.8
H2A—N2—H2C109.5N2—C4—C3113.05 (11)
H2B—N2—H2C109.5N2—C4—H4A109.0
C3—N3—H3A109.5C3—C4—H4A109.0
C3—N3—H3B109.5N2—C4—H4B109.0
H3A—N3—H3B109.5C3—C4—H4B109.0
C3—N3—H3C109.5H4A—C4—H4B107.8
N3—C3—C4—N262.64 (15)
D—H···AD—HH···AD···AD—H···A
N2—H2B···N10.892.112.986 (2)169
N3—H3A···O20.892.022.8685 (17)158
C3—H3E···S10.972.773.7294 (18)169
N2—H2A···N1ii0.892.052.899 (2)159
N2—H2C···O1iii0.891.952.8337 (18)172
N3—H3B···O1iv0.892.022.9078 (17)174
N3—H3C···O1iii0.892.403.0465 (18)129
N3—H3C···O2v0.891.992.8189 (18)154
C4—H4B···S1vi0.972.683.4495 (18)136
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2B⋯N10.892.112.986 (2)169
N3—H3A⋯O20.892.022.8685 (17)158
C3—H3E⋯S10.972.773.7294 (18)169
N2—H2A⋯N1i0.892.052.899 (2)159
N2—H2C⋯O1ii0.891.952.8337 (18)172
N3—H3B⋯O1iii0.892.022.9078 (17)174
N3—H3C⋯O1ii0.892.403.0465 (18)129
N3—H3C⋯O2iv0.891.992.8189 (18)154
C4—H4B⋯S1v0.972.683.4495 (18)136

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

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