Literature DB >> 21200745

Bis[(E)-4-(hydroxy-imino-meth-yl)pyridinium] oxalate.

Rüdiger W Seidel, Manuela V Winter, Iris M Oppel.   

Abstract

The formula unit of the title compound, 2C(6)H(7)N(2)O(+)·C(2)O(4) (2-), comprises two symmetry-equivalent 4-(hydroxy-imino-meth-yl)-pyridinium cations on general positions, linked through hydrogen bonding via an oxalate anion that resides on a crystallographic centre of symmetry. The crystal structure consists of infinite chains of cations and oxalate anions directed by O-H⋯O and multicentre N-H⋯O inter-molecular hydrogen-bonding inter-actions.

Entities:  

Year:  2007        PMID: 21200745      PMCID: PMC2915244          DOI: 10.1107/S1600536807064136

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature, see: Martínez-Ripoll & Lorenz (1976a ▶,b ▶).

Experimental

Crystal data

2C6H7N2O+·C2O4 2− M = 334.30 Monoclinic, a = 4.8895 (2) Å b = 15.2920 (5) Å c = 10.0491 (4) Å β = 103.967 (4)° V = 729.16 (5) Å3 Z = 2 Mo Kα radiation μ = 0.12 mm−1 T = 113 (2) K 0.55 × 0.11 × 0.10 mm

Data collection

Oxford Diffraction Sapphire2 CCD diffractometer Absorption correction: multi-scan (ABSPACK in CrysAlis RED; Oxford Diffraction, 2006 ▶) T min = 0.856, T max = 0.990 11067 measured reflections 1281 independent reflections 961 reflections with I > 2σ(I) R int = 0.051

Refinement

R[F 2 > 2σ(F 2)] = 0.032 wR(F 2) = 0.089 S = 1.04 1281 reflections 110 parameters H-atom parameters constrained Δρmax = 0.23 e Å−3 Δρmin = −0.23 e Å−3 Data collection: CrysAlis CCD (Oxford Diffraction, 2006 ▶); cell refinement: CrysAlis RED (Oxford Diffraction, 2006 ▶); data reduction: CrysAlis RED; program(s) used to solve structure: SHELXS97 (Sheldrick, 1997 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997 ▶); molecular graphics: DIAMOND (Brandenburg, 2007 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536807064136/gg2061sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536807064136/gg2061Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
2C6H7N2O+·C2O42–F000 = 348
Mr = 334.30Dx = 1.523 Mg m3
Monoclinic, P21/cMelting point: not measured K
Hall symbol: -P 2ybcMo Kα radiation λ = 0.71073 Å
a = 4.8895 (2) ÅCell parameters from 3854 reflections
b = 15.2920 (5) Åθ = 2.5–36.5º
c = 10.0491 (4) ŵ = 0.12 mm1
β = 103.967 (4)ºT = 113 (2) K
V = 729.16 (5) Å3Needle, colourless
Z = 20.55 × 0.11 × 0.10 mm
Oxford Diffraction Sapphire2 CCD diffractometer1281 independent reflections
Radiation source: Enhance (Mo) X-ray Source961 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.051
Detector resolution: 8.4171 pixels mm-1θmax = 25.0º
T = 113(2) Kθmin = 3.4º
ω scansh = −5→5
Absorption correction: multi-scan(ABSPACK in CrysAlis RED; Oxford Diffraction, 2006)k = −18→18
Tmin = 0.856, Tmax = 0.990l = −11→11
11067 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.032H-atom parameters constrained
wR(F2) = 0.089  w = 1/[σ2(Fo2) + (0.0522P)2 + 0.0471P] where P = (Fo2 + 2Fc2)/3
S = 1.04(Δ/σ)max < 0.001
1281 reflectionsΔρmax = 0.23 e Å3
110 parametersΔρmin = −0.23 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.6117 (3)0.60445 (9)0.71059 (13)0.0247 (4)
H10.70640.58830.65050.030*
N420.1137 (3)0.62604 (9)1.08097 (13)0.0241 (3)
C20.4916 (3)0.54332 (11)0.77268 (16)0.0243 (4)
H20.51180.48330.75280.029*
C30.3397 (3)0.56697 (11)0.86471 (16)0.0225 (4)
H30.25070.52350.90720.027*
C40.3160 (3)0.65497 (10)0.89594 (15)0.0204 (4)
C50.4469 (3)0.71665 (10)0.83047 (16)0.0245 (4)
H50.43570.77710.85030.029*
C60.5916 (3)0.68968 (11)0.73751 (16)0.0257 (4)
H60.67870.73170.69150.031*
C410.1582 (3)0.68277 (10)0.99568 (15)0.0224 (4)
H410.09140.74110.99660.027*
O43−0.0394 (3)0.65975 (7)1.16792 (12)0.0293 (3)
H43−0.01410.62861.23870.044*
O710.8730 (2)0.60681 (7)0.50707 (11)0.0301 (3)
O721.1057 (2)0.54797 (7)0.36342 (11)0.0292 (3)
C70.9929 (3)0.54522 (10)0.46309 (16)0.0225 (4)
U11U22U33U12U13U23
O430.0383 (7)0.0282 (7)0.0282 (7)0.0070 (5)0.0211 (6)0.0022 (5)
N10.0233 (8)0.0312 (8)0.0215 (7)0.0015 (6)0.0089 (6)−0.0007 (6)
N420.0256 (8)0.0262 (8)0.0236 (7)0.0039 (6)0.0123 (6)−0.0010 (6)
C20.0249 (9)0.0242 (9)0.0237 (9)0.0009 (7)0.0057 (7)0.0007 (7)
C30.0236 (9)0.0235 (9)0.0213 (8)0.0008 (7)0.0073 (7)0.0031 (7)
C40.0191 (8)0.0245 (9)0.0169 (8)0.0019 (7)0.0030 (7)0.0032 (6)
C50.0276 (9)0.0212 (9)0.0247 (9)0.0002 (7)0.0064 (7)0.0024 (7)
C60.0260 (9)0.0288 (9)0.0234 (9)−0.0033 (8)0.0080 (7)0.0035 (7)
C410.0242 (9)0.0218 (9)0.0220 (9)0.0027 (7)0.0072 (7)−0.0003 (6)
O710.0411 (7)0.0239 (6)0.0315 (7)0.0038 (5)0.0210 (6)0.0022 (5)
O720.0382 (7)0.0292 (7)0.0268 (6)0.0032 (5)0.0207 (6)0.0038 (5)
C70.0226 (9)0.0249 (9)0.0207 (8)−0.0035 (7)0.0064 (7)−0.0019 (7)
O43—N421.380 (2)C4—C51.391 (2)
O43—H430.8400C4—C411.468 (2)
N1—C21.336 (2)C5—C61.364 (2)
N1—C61.340 (2)C5—H50.9500
N1—H10.8800C6—H60.9500
N42—C411.274 (2)C41—H410.9500
C2—C31.367 (2)O71—C71.246 (2)
C2—H20.9500O72—C71.255 (2)
C3—C41.393 (2)C7—C7i1.563 (3)
C3—H30.9500
N42—O43—H43109.5C3—C4—C41121.31 (14)
C2—N1—C6121.63 (14)C6—C5—C4119.51 (15)
C2—N1—H1119.2C6—C5—H5120.2
C6—N1—H1119.2C4—C5—H5120.2
C41—N42—O43112.22 (13)N1—C6—C5120.53 (15)
N1—C2—C3120.17 (15)N1—C6—H6119.7
N1—C2—H2119.9C5—C6—H6119.7
C3—C2—H2119.9N42—C41—C4117.73 (14)
C2—C3—C4119.75 (15)N42—C41—H41121.1
C2—C3—H3120.1C4—C41—H41121.1
C4—C3—H3120.1O71—C7—O72126.36 (15)
C5—C4—C3118.40 (15)O71—C7—C7i118.13 (17)
C5—C4—C41120.30 (15)O72—C7—C7i115.51 (17)
C6—N1—C2—C31.1 (2)C2—N1—C6—C50.2 (2)
N1—C2—C3—C4−1.5 (2)C4—C5—C6—N1−1.0 (2)
C2—C3—C4—C50.7 (2)O43—N42—C41—C4−179.24 (12)
C2—C3—C4—C41−179.11 (14)C5—C4—C41—N42−159.83 (16)
C3—C4—C5—C60.5 (2)C3—C4—C41—N4220.0 (2)
C41—C4—C5—C6−179.66 (14)
D—H···AD—HH···AD···AD—H···A
N1—H1···O710.881.842.660 (2)154
N1—H1···O72i0.882.302.897 (2)126
O43—H43···O72ii0.841.762.571 (2)163
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯O710.881.842.660 (2)154
N1—H1⋯O72i0.882.302.897 (2)126
O43—H43⋯O72ii0.841.762.571 (2)163

Symmetry codes: (i) ; (ii) .

  1 in total

1.  Ethyl-enediaminium hemioxalate thio-cyanate.

Authors:  Leila Narimani; Bohari M Yamin
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-02-20
  1 in total

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