Literature DB >> 21580358

2-Propyl 3,3-dibromo-2-hydroxy-pyrrolidine-1-carboxyl-ate.

Gary S Nichol, Steven Gunawan, Zhigang Xu, Justin Dietrich, Christopher Hulme.   

Abstract

The title compound, C(8)H(13)Br(2)NO(3), crystallizes as a non-merohedral twin with twin law -0.6 0 0.4/0 - 1 0 /1.6 0 0.6, and the structure has a refined twin domain ratio of 0.546 (5). The structure shows a compact conformation, with the ester unit roughly coplanar with a mean plane fitted through the non-H atoms of the pyrrolidine ring [dihedral angle = 8.23 (9)°]. In the crystal, inversion dimers linked by pairs of O-H⋯O hydrogen bonds generate an R(2) (2)(12) motif.

Entities:  

Year:  2010        PMID: 21580358      PMCID: PMC2983708          DOI: 10.1107/S1600536810005106

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For details of the synthesis, see: Magnus et al. (1994 ▶); Salamant & Hulme (2006 ▶). For puckering parameters, see: Cremer & Pople (1975 ▶). For hydrogen-bonding motifs, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C8H13Br2NO3 M = 331.01 Monoclinic, a = 10.1061 (5) Å b = 5.9914 (3) Å c = 18.5496 (9) Å β = 95.880 (2)° V = 1117.26 (10) Å3 Z = 4 Mo Kα radiation μ = 7.24 mm−1 T = 100 K 0.44 × 0.16 × 0.11 mm

Data collection

Bruker Kappa APEXII DUO CCD diffractometer Absorption correction: multi-scan (TWINABS; Sheldrick, 1996 ▶) T min = 0.144, T max = 0.514 34994 measured reflections 9572 independent reflections 7956 reflections with I > 2σ(I) R int = 0.042

Refinement

R[F 2 > 2σ(F 2)] = 0.032 wR(F 2) = 0.082 S = 1.03 9572 reflections 138 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 1.41 e Å−3 Δρmin = −0.77 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT and CELL_NOW (Sheldrick, 2004 ▶); program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and Mercury (Macrae et al., 2008 ▶); software used to prepare material for publication: SHELXTL and local programs. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810005106/fj2278sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810005106/fj2278Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C8H13Br2NO3F(000) = 648
Mr = 331.01Dx = 1.968 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 4995 reflections
a = 10.1061 (5) Åθ = 2.2–36.3°
b = 5.9914 (3) ŵ = 7.24 mm1
c = 18.5496 (9) ÅT = 100 K
β = 95.880 (2)°Rod, colourless
V = 1117.26 (10) Å30.44 × 0.16 × 0.11 mm
Z = 4
Bruker Kappa APEXII DUO CCD diffractometer9572 independent reflections
Radiation source: fine-focus sealed tube with Miracol optics7956 reflections with I > 2σ(I)
graphiteRint = 0.042
φ and ω scansθmax = 36.4°, θmin = 2.2°
Absorption correction: multi-scan (TWINABS; Sheldrick, 1996)h = −16→16
Tmin = 0.144, Tmax = 0.514k = 0→9
34994 measured reflectionsl = 0→30
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.032Hydrogen site location: difference Fourier map
wR(F2) = 0.082H atoms treated by a mixture of independent and constrained refinement
S = 1.03w = 1/[σ2(Fo2) + (0.041P)2 + 0.6397P] where P = (Fo2 + 2Fc2)/3
9572 reflections(Δ/σ)max < 0.001
138 parametersΔρmax = 1.41 e Å3
0 restraintsΔρmin = −0.77 e Å3
Experimental. 1H- NMR (300 MHz, CDCl3) δ ppm 1.26 (d, J = 6.0 Hz, 6H), 2.78 (m, 1H), 3.00 (m, 1H), 3.55 (m, 2H), 4.65 (s, 1H), 5.00 (m, 1H), 5.66 (d, J = 18.6 Hz, 1H)13 C-NMR (75 MHz, CDCl3) δ ppm 22.6, 43.4, 44.6, 64.9, 70.2, 77.9, 155.3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Br10.276925 (16)0.10387 (3)0.190848 (8)0.01807 (4)
Br20.113078 (15)0.17803 (3)0.039208 (9)0.01933 (4)
O10.39288 (12)0.2381 (2)−0.01016 (6)0.01668 (19)
H1O0.371 (3)0.120 (5)−0.0310 (15)0.029 (7)*
O20.68184 (12)0.16332 (19)0.07343 (7)0.0190 (2)
O30.69480 (10)0.47225 (18)0.14461 (6)0.01432 (18)
N0.49624 (12)0.3442 (2)0.10291 (7)0.0134 (2)
C10.27415 (14)0.2599 (2)0.09769 (7)0.0137 (2)
C20.40238 (14)0.1940 (2)0.06403 (7)0.0125 (2)
H20.42650.03450.07450.015*
C30.43486 (14)0.5339 (2)0.13709 (8)0.0153 (2)
H3A0.47160.67760.12190.018*
H3B0.44790.52300.19060.018*
C40.28818 (15)0.5100 (2)0.10886 (8)0.0156 (2)
H4A0.22970.56440.14480.019*
H4B0.26730.59190.06280.019*
C50.62874 (14)0.3155 (2)0.10427 (8)0.0137 (2)
C60.84008 (14)0.4710 (2)0.14715 (8)0.0146 (2)
H60.862 (2)0.423 (4)0.1000 (12)0.014 (5)*
C70.88361 (16)0.7097 (2)0.16218 (9)0.0185 (3)
H7A0.83990.80760.12470.028*
H7B0.98030.72060.16190.028*
H7C0.85880.75530.20970.028*
C80.89639 (17)0.3118 (3)0.20548 (10)0.0223 (3)
H8A0.99360.30900.20690.033*
H8B0.86100.16170.19490.033*
H8C0.87110.36130.25250.033*
U11U22U33U12U13U23
Br10.02072 (7)0.02068 (7)0.01338 (6)−0.00119 (5)0.00450 (5)0.00190 (5)
Br20.01232 (6)0.02662 (8)0.01853 (7)−0.00274 (5)−0.00098 (5)−0.00543 (5)
O10.0195 (5)0.0195 (5)0.0112 (4)−0.0029 (4)0.0021 (4)−0.0022 (4)
O20.0149 (5)0.0183 (5)0.0239 (5)0.0008 (4)0.0017 (4)−0.0089 (4)
O30.0113 (4)0.0153 (4)0.0160 (4)−0.0003 (3)−0.0004 (3)−0.0044 (4)
N0.0116 (5)0.0136 (5)0.0150 (5)−0.0012 (4)0.0007 (4)−0.0046 (4)
C10.0126 (5)0.0162 (5)0.0119 (5)−0.0013 (4)−0.0003 (4)−0.0009 (4)
C20.0120 (5)0.0142 (5)0.0113 (5)−0.0017 (4)0.0016 (4)−0.0021 (4)
C30.0142 (6)0.0137 (5)0.0179 (6)0.0002 (4)0.0018 (5)−0.0047 (5)
C40.0148 (6)0.0145 (6)0.0173 (6)0.0018 (4)0.0010 (5)−0.0021 (5)
C50.0127 (5)0.0149 (5)0.0132 (5)0.0000 (4)0.0004 (4)−0.0014 (4)
C60.0106 (5)0.0160 (5)0.0170 (6)−0.0002 (4)0.0009 (4)−0.0011 (5)
C70.0160 (6)0.0165 (6)0.0226 (7)−0.0032 (5)−0.0006 (5)0.0003 (5)
C80.0187 (7)0.0180 (6)0.0286 (8)0.0002 (5)−0.0052 (6)0.0022 (6)
Br1—C11.9624 (14)C3—H3B0.990
Br2—C11.9250 (14)C3—C41.527 (2)
O1—H1O0.83 (3)C4—H4A0.990
O1—C21.3949 (17)C4—H4B0.990
O2—C51.2286 (18)C6—H60.97 (2)
O3—C51.3360 (17)C6—C71.513 (2)
O3—C61.4641 (18)C6—C81.510 (2)
N—C21.4457 (18)C7—H7A0.980
N—C31.4695 (19)C7—H7B0.980
N—C51.3478 (19)C7—H7C0.980
C1—C21.546 (2)C8—H8A0.980
C1—C41.517 (2)C8—H8B0.980
C2—H21.000C8—H8C0.980
C3—H3A0.990
H1O—O1—C2106.6 (19)C1—C4—H4B111.3
C5—O3—C6117.15 (11)C3—C4—H4A111.3
C2—N—C3114.36 (12)C3—C4—H4B111.3
C2—N—C5121.99 (12)H4A—C4—H4B109.2
C3—N—C5123.58 (12)O2—C5—O3124.43 (13)
Br1—C1—Br2108.05 (7)O2—C5—N124.50 (13)
Br1—C1—C2107.27 (9)O3—C5—N111.06 (12)
Br1—C1—C4110.95 (9)O3—C6—H6107.0 (13)
Br2—C1—C2113.74 (9)O3—C6—C7105.83 (12)
Br2—C1—C4112.98 (10)O3—C6—C8109.23 (12)
C2—C1—C4103.71 (12)H6—C6—C7111.1 (13)
O1—C2—N110.45 (12)H6—C6—C8110.8 (13)
O1—C2—C1111.97 (11)C7—C6—C8112.58 (13)
O1—C2—H2111.3C6—C7—H7A109.5
N—C2—C199.99 (11)C6—C7—H7B109.5
N—C2—H2111.3C6—C7—H7C109.5
C1—C2—H2111.3H7A—C7—H7B109.5
N—C3—H3A111.3H7A—C7—H7C109.5
N—C3—H3B111.3H7B—C7—H7C109.5
N—C3—C4102.54 (11)C6—C8—H8A109.5
H3A—C3—H3B109.2C6—C8—H8B109.5
H3A—C3—C4111.3C6—C8—H8C109.5
H3B—C3—C4111.3H8A—C8—H8B109.5
C1—C4—C3102.32 (11)H8A—C8—H8C109.5
C1—C4—H4A111.3H8B—C8—H8C109.5
C3—N—C2—O199.81 (14)Br1—C1—C4—C373.49 (12)
C3—N—C2—C1−18.30 (15)Br2—C1—C4—C3−165.00 (10)
C5—N—C2—O1−77.31 (17)C2—C1—C4—C3−41.39 (13)
C5—N—C2—C1164.59 (13)N—C3—C4—C129.33 (14)
Br1—C1—C2—O1161.81 (9)C6—O3—C5—O25.0 (2)
Br1—C1—C2—N−81.21 (11)C6—O3—C5—N−176.05 (12)
Br2—C1—C2—O142.39 (14)C2—N—C5—O20.1 (2)
Br2—C1—C2—N159.37 (9)C2—N—C5—O3−178.85 (12)
C4—C1—C2—O1−80.72 (13)C3—N—C5—O2−176.76 (14)
C4—C1—C2—N36.26 (13)C3—N—C5—O34.3 (2)
C2—N—C3—C4−6.68 (16)C5—O3—C6—C7152.87 (13)
C5—N—C3—C4170.38 (13)C5—O3—C6—C8−85.69 (15)
D—H···AD—HH···AD···AD—H···A
O1—H1O···O2i0.83 (3)1.92 (3)2.7479 (16)176 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1O⋯O2i0.83 (3)1.92 (3)2.7479 (16)176 (3)

Symmetry code: (i) .

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