Literature DB >> 21580334

Dibenzyl 3,3'-diethyl-4,4'-dimethyl-2,2'-methylenebis(pyrrole-5-carboxylate).

Hee-Joon Kim1.   

Abstract

In the title compound, C(31)H(34)N(2)O(4), the two pyrrole rings are bent around the central methyl-ene C atom, making a dihedral angle of 64.83 (7)°. In the crystal, mol-ecules are linked into dimers via N-H⋯O=C hydrogen bonds. These dimers are packed through π⋯π inter-actions between neighboring pyrrole rings with a separation between the mean planes of symmetry-related pyrrole rings of 3.61 (2) Å and a centroid-centroid distance of 4.33 Å. Parallel phenyl groups in neighboring dimers also exhibit efficient π⋯π inter-actions, characterized by an inter-plane separation of 3.378 (8) Å and a centroid-centroid distance of 3.97 Å.

Entities:  

Year:  2010        PMID: 21580334      PMCID: PMC2983617          DOI: 10.1107/S1600536810004459

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the preparation of the title compound, see: Twyman & Sanders (1999 ▶). For related structures, see: Bonnett et al. (1972 ▶); Senge (2005 ▶); Vega et al. (2003 ▶). For the use of dipyrrylmethanes in organic synthesis, see: Chen et al. (2000 ▶) and references cited therein; Jasat & Dolphin (1997 ▶); Shanmugathasan et al. (2000 ▶).

Experimental

Crystal data

C31H34N2O4 M = 498.60 Monoclinic, a = 14.2002 (9) Å b = 7.9220 (5) Å c = 25.0939 (16) Å β = 104.373 (3)° V = 2734.6 (3) Å3 Z = 4 Mo Kα radiation μ = 0.08 mm−1 T = 162 K 0.35 × 0.32 × 0.08 mm

Data collection

Bruker SMART APEX CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 1998 ▶) T min = 0.972, T max = 0.993 37570 measured reflections 6304 independent reflections 4371 reflections with I > 2σ(I) R int = 0.059

Refinement

R[F 2 > 2σ(F 2)] = 0.049 wR(F 2) = 0.136 S = 1.05 6304 reflections 346 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.29 e Å−3 Δρmin = −0.26 e Å−3 Data collection: SMART (Bruker, 1998 ▶); cell refinement: SAINT (Bruker, 1998 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, globle. DOI: 10.1107/S1600536810004459/bh2271sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810004459/bh2271Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C31H34N2O4F(000) = 1064
Mr = 498.60Dx = 1.211 Mg m3
Monoclinic, P2/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2yacCell parameters from 9928 reflections
a = 14.2002 (9) Åθ = 2.6–24.4°
b = 7.9220 (5) ŵ = 0.08 mm1
c = 25.0939 (16) ÅT = 162 K
β = 104.373 (3)°Plate, colourless
V = 2734.6 (3) Å30.35 × 0.32 × 0.08 mm
Z = 4
Bruker SMART APEX CCD diffractometer6304 independent reflections
Radiation source: fine-focus sealed tube4371 reflections with I > 2σ(I)
graphiteRint = 0.059
φ and ω scansθmax = 27.6°, θmin = 1.5°
Absorption correction: multi-scan (SADABS; Bruker, 1998)h = −18→18
Tmin = 0.972, Tmax = 0.993k = −10→10
37570 measured reflectionsl = −31→32
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.049Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.136H atoms treated by a mixture of independent and constrained refinement
S = 1.05w = 1/[σ2(Fo2) + (0.0505P)2 + 0.953P] where P = (Fo2 + 2Fc2)/3
6304 reflections(Δ/σ)max = 0.001
346 parametersΔρmax = 0.29 e Å3
0 restraintsΔρmin = −0.26 e Å3
0 constraints
xyzUiso*/Ueq
O10.84641 (10)0.85654 (17)0.91775 (6)0.0528 (4)
O20.75643 (10)0.65074 (17)0.86750 (7)0.0603 (4)
O30.76635 (7)0.24675 (15)0.68188 (4)0.0342 (3)
O40.87580 (7)0.18152 (15)0.63406 (4)0.0334 (3)
N10.90073 (10)0.43117 (18)0.88502 (5)0.0310 (3)
H10.8449 (15)0.396 (3)0.8648 (8)0.047 (6)*
N20.90338 (9)0.17664 (17)0.77990 (5)0.0285 (3)
H20.8449 (14)0.204 (2)0.7845 (7)0.045 (5)*
C10.91713 (12)0.5906 (2)0.90767 (7)0.0339 (4)
C21.01355 (12)0.5990 (2)0.93634 (6)0.0348 (4)
C31.05588 (12)0.4413 (2)0.93042 (6)0.0327 (4)
C40.98377 (11)0.3399 (2)0.89853 (6)0.0295 (3)
C50.98552 (12)0.1610 (2)0.87970 (6)0.0319 (4)
H5A0.92830.10100.88630.038*
H5B1.04450.10510.90210.038*
C60.98473 (11)0.1445 (2)0.82008 (6)0.0294 (3)
C71.05896 (11)0.1041 (2)0.79533 (7)0.0315 (4)
C81.01998 (11)0.1126 (2)0.73787 (7)0.0310 (4)
C90.92347 (11)0.1592 (2)0.72921 (6)0.0287 (3)
C101.06422 (14)0.7464 (2)0.96891 (8)0.0461 (5)
H10A1.01610.83180.97230.069*
H10B1.11050.79540.95010.069*
H10C1.09910.70811.00560.069*
C111.07570 (12)0.0804 (3)0.69528 (7)0.0426 (4)
H11A1.05250.15660.66400.064*
H11B1.0659−0.03690.68270.064*
H11C1.14510.10040.71130.064*
C121.16037 (12)0.3931 (3)0.95415 (7)0.0422 (4)
H12A1.16520.26850.95630.051*
H12B1.18150.43790.99210.051*
C131.22892 (14)0.4582 (3)0.92102 (9)0.0538 (5)
H13A1.29520.41990.93800.081*
H13B1.22730.58180.92030.081*
H13C1.20850.41480.88330.081*
C141.16166 (11)0.0618 (2)0.82435 (7)0.0399 (4)
H14A1.17420.10080.86300.048*
H14B1.20610.12430.80670.048*
C151.18485 (14)−0.1252 (3)0.82408 (9)0.0533 (5)
H15A1.2535−0.14340.84250.080*
H15B1.1721−0.16530.78600.080*
H15C1.1440−0.18750.84350.080*
C160.84033 (13)0.7142 (2)0.89944 (8)0.0416 (4)
C170.67700 (17)0.7704 (3)0.85195 (13)0.0862 (9)
H17A0.69560.86440.83060.103*
H17B0.66140.81790.88520.103*
C180.59147 (15)0.6804 (3)0.81813 (9)0.0532 (5)
C190.58054 (18)0.6486 (3)0.76239 (10)0.0682 (7)
H19A0.63010.68280.74530.082*
C200.4995 (2)0.5688 (3)0.73183 (10)0.0717 (7)
H20A0.49370.54820.69390.086*
C210.4286 (2)0.5196 (3)0.75463 (12)0.0751 (8)
H21A0.37280.46460.73280.090*
C220.43577 (19)0.5477 (3)0.80892 (13)0.0766 (8)
H22A0.38500.51350.82500.092*
C230.51800 (19)0.6269 (3)0.84062 (10)0.0637 (6)
H23A0.52340.64450.87870.076*
C240.84815 (11)0.1997 (2)0.68106 (6)0.0276 (3)
C250.80269 (12)0.2219 (2)0.58423 (6)0.0359 (4)
H25A0.78370.34210.58440.043*
H25B0.74410.15140.58140.043*
C260.84675 (12)0.1871 (2)0.53687 (6)0.0324 (4)
C270.81372 (12)0.0548 (2)0.50133 (7)0.0405 (4)
H27A0.7629−0.01560.50690.049*
C280.85450 (14)0.0244 (3)0.45761 (7)0.0478 (5)
H28A0.8312−0.06620.43310.057*
C290.92838 (15)0.1244 (3)0.44945 (7)0.0490 (5)
H29A0.95600.10320.41930.059*
C300.96260 (15)0.2558 (3)0.48502 (8)0.0496 (5)
H30A1.01420.32470.47960.060*
C310.92170 (14)0.2872 (2)0.52860 (7)0.0414 (4)
H31A0.94520.37800.55300.050*
U11U22U33U12U13U23
O10.0556 (8)0.0344 (8)0.0696 (9)−0.0040 (6)0.0177 (7)−0.0095 (7)
O20.0426 (8)0.0386 (8)0.0881 (11)0.0093 (6)−0.0059 (7)−0.0128 (7)
O30.0246 (6)0.0458 (7)0.0335 (6)0.0038 (5)0.0095 (5)0.0045 (5)
O40.0264 (6)0.0474 (7)0.0267 (5)0.0018 (5)0.0072 (5)−0.0004 (5)
N10.0286 (7)0.0331 (8)0.0300 (7)−0.0034 (6)0.0047 (6)−0.0023 (6)
N20.0198 (6)0.0365 (8)0.0293 (7)0.0011 (6)0.0067 (5)−0.0012 (6)
C10.0390 (9)0.0325 (9)0.0308 (8)−0.0042 (7)0.0098 (7)−0.0021 (7)
C20.0396 (9)0.0388 (10)0.0255 (8)−0.0079 (8)0.0073 (7)0.0008 (7)
C30.0335 (9)0.0401 (10)0.0227 (7)−0.0062 (7)0.0035 (6)0.0036 (7)
C40.0287 (8)0.0353 (9)0.0241 (7)−0.0025 (7)0.0061 (6)0.0021 (7)
C50.0295 (8)0.0349 (9)0.0297 (8)0.0011 (7)0.0042 (7)0.0040 (7)
C60.0240 (7)0.0305 (9)0.0317 (8)−0.0014 (6)0.0035 (6)−0.0017 (7)
C70.0229 (8)0.0337 (9)0.0365 (9)−0.0017 (7)0.0046 (6)−0.0067 (7)
C80.0220 (7)0.0355 (9)0.0355 (8)−0.0026 (7)0.0073 (6)−0.0065 (7)
C90.0238 (7)0.0340 (9)0.0288 (8)−0.0018 (6)0.0074 (6)−0.0033 (7)
C100.0522 (11)0.0449 (11)0.0387 (10)−0.0128 (9)0.0062 (8)−0.0066 (9)
C110.0289 (9)0.0586 (12)0.0426 (10)0.0007 (8)0.0137 (7)−0.0106 (9)
C120.0365 (10)0.0486 (11)0.0344 (9)−0.0041 (8)−0.0044 (7)0.0032 (8)
C130.0353 (10)0.0589 (13)0.0647 (13)−0.0043 (9)0.0075 (9)0.0014 (11)
C140.0229 (8)0.0482 (11)0.0455 (10)0.0012 (7)0.0026 (7)−0.0091 (9)
C150.0381 (10)0.0506 (12)0.0624 (13)0.0104 (9)−0.0042 (9)−0.0059 (10)
C160.0437 (10)0.0353 (10)0.0461 (10)−0.0035 (8)0.0115 (8)−0.0010 (8)
C170.0564 (14)0.0475 (14)0.133 (2)0.0215 (11)−0.0170 (15)−0.0224 (15)
C180.0521 (12)0.0439 (12)0.0589 (13)0.0229 (10)0.0051 (10)−0.0037 (10)
C190.0650 (15)0.0705 (16)0.0724 (16)0.0287 (13)0.0233 (13)0.0057 (13)
C200.0748 (17)0.0749 (17)0.0536 (13)0.0352 (14)−0.0066 (13)−0.0125 (13)
C210.0650 (16)0.0567 (15)0.089 (2)0.0198 (13)−0.0085 (14)−0.0120 (14)
C220.0667 (16)0.0588 (16)0.108 (2)0.0098 (13)0.0284 (16)0.0136 (16)
C230.0788 (17)0.0564 (14)0.0533 (13)0.0223 (13)0.0112 (12)0.0034 (11)
C240.0241 (7)0.0294 (8)0.0307 (8)−0.0033 (6)0.0096 (6)−0.0001 (7)
C250.0302 (8)0.0458 (10)0.0304 (8)0.0040 (7)0.0053 (7)0.0059 (8)
C260.0316 (8)0.0368 (9)0.0276 (8)0.0038 (7)0.0051 (7)0.0050 (7)
C270.0331 (9)0.0471 (11)0.0364 (9)−0.0033 (8)−0.0005 (7)−0.0010 (8)
C280.0486 (11)0.0553 (12)0.0332 (9)0.0020 (10)−0.0018 (8)−0.0113 (9)
C290.0591 (12)0.0605 (13)0.0285 (9)0.0076 (10)0.0133 (8)−0.0004 (9)
C300.0582 (12)0.0535 (13)0.0430 (10)−0.0070 (10)0.0236 (9)0.0045 (10)
C310.0520 (11)0.0392 (10)0.0353 (9)−0.0073 (8)0.0154 (8)−0.0030 (8)
O1—C161.213 (2)C13—H13A0.9800
O2—C161.356 (2)C13—H13B0.9800
O2—C171.451 (2)C13—H13C0.9800
O3—C241.2249 (18)C14—C151.518 (3)
O4—C241.3400 (18)C14—H14A0.9900
O4—C251.4490 (18)C14—H14B0.9900
N1—C41.352 (2)C15—H15A0.9800
N1—C11.381 (2)C15—H15B0.9800
N1—H10.87 (2)C15—H15C0.9800
N2—C61.356 (2)C17—C181.481 (3)
N2—C91.3778 (19)C17—H17A0.9900
N2—H20.893 (19)C17—H17B0.9900
C1—C21.381 (2)C18—C231.371 (3)
C1—C161.442 (3)C18—C191.391 (3)
C2—C31.410 (3)C19—C201.368 (4)
C2—C101.502 (2)C19—H19A0.9500
C3—C41.388 (2)C20—C211.334 (4)
C3—C121.504 (2)C20—H20A0.9500
C4—C51.496 (2)C21—C221.359 (4)
C5—C61.499 (2)C21—H21A0.9500
C5—H5A0.9900C22—C231.389 (4)
C5—H5B0.9900C22—H22A0.9500
C6—C71.387 (2)C23—H23A0.9500
C7—C81.412 (2)C25—C261.500 (2)
C7—C141.497 (2)C25—H25A0.9900
C8—C91.383 (2)C25—H25B0.9900
C8—C111.501 (2)C26—C271.381 (2)
C9—C241.437 (2)C26—C311.384 (2)
C10—H10A0.9800C27—C281.383 (3)
C10—H10B0.9800C27—H27A0.9500
C10—H10C0.9800C28—C291.370 (3)
C11—H11A0.9800C28—H28A0.9500
C11—H11B0.9800C29—C301.379 (3)
C11—H11C0.9800C29—H29A0.9500
C12—C131.519 (3)C30—C311.382 (2)
C12—H12A0.9900C30—H30A0.9500
C12—H12B0.9900C31—H31A0.9500
C16—O2—C17115.28 (16)C15—C14—H14A108.8
C24—O4—C25115.60 (12)C7—C14—H14B108.8
C4—N1—C1109.76 (14)C15—C14—H14B108.8
C4—N1—H1125.8 (13)H14A—C14—H14B107.7
C1—N1—H1124.5 (13)C14—C15—H15A109.5
C6—N2—C9109.53 (13)C14—C15—H15B109.5
C6—N2—H2126.6 (12)H15A—C15—H15B109.5
C9—N2—H2123.8 (12)C14—C15—H15C109.5
N1—C1—C2107.62 (15)H15A—C15—H15C109.5
N1—C1—C16121.18 (15)H15B—C15—H15C109.5
C2—C1—C16131.20 (16)O1—C16—O2122.53 (17)
C1—C2—C3107.20 (15)O1—C16—C1126.65 (18)
C1—C2—C10126.87 (17)O2—C16—C1110.82 (16)
C3—C2—C10125.92 (16)O2—C17—C18108.16 (17)
C4—C3—C2107.49 (14)O2—C17—H17A110.1
C4—C3—C12126.53 (16)C18—C17—H17A110.1
C2—C3—C12125.98 (15)O2—C17—H17B110.1
N1—C4—C3107.93 (15)C18—C17—H17B110.1
N1—C4—C5120.59 (14)H17A—C17—H17B108.4
C3—C4—C5131.48 (15)C23—C18—C19116.8 (2)
C4—C5—C6113.68 (13)C23—C18—C17120.8 (2)
C4—C5—H5A108.8C19—C18—C17122.3 (2)
C6—C5—H5A108.8C20—C19—C18121.0 (2)
C4—C5—H5B108.8C20—C19—H19A119.5
C6—C5—H5B108.8C18—C19—H19A119.5
H5A—C5—H5B107.7C21—C20—C19120.9 (2)
N2—C6—C7108.19 (14)C21—C20—H20A119.6
N2—C6—C5121.31 (13)C19—C20—H20A119.6
C7—C6—C5130.45 (14)C20—C21—C22120.4 (3)
C6—C7—C8107.30 (13)C20—C21—H21A119.8
C6—C7—C14126.19 (15)C22—C21—H21A119.8
C8—C7—C14126.51 (14)C21—C22—C23119.4 (3)
C9—C8—C7107.16 (13)C21—C22—H22A120.3
C9—C8—C11127.60 (15)C23—C22—H22A120.3
C7—C8—C11125.22 (14)C18—C23—C22121.4 (2)
N2—C9—C8107.80 (13)C18—C23—H23A119.3
N2—C9—C24118.19 (13)C22—C23—H23A119.3
C8—C9—C24133.88 (14)O3—C24—O4122.27 (14)
C2—C10—H10A109.5O3—C24—C9124.37 (14)
C2—C10—H10B109.5O4—C24—C9113.36 (13)
H10A—C10—H10B109.5O4—C25—C26107.03 (13)
C2—C10—H10C109.5O4—C25—H25A110.3
H10A—C10—H10C109.5C26—C25—H25A110.3
H10B—C10—H10C109.5O4—C25—H25B110.3
C8—C11—H11A109.5C26—C25—H25B110.3
C8—C11—H11B109.5H25A—C25—H25B108.6
H11A—C11—H11B109.5C27—C26—C31119.28 (16)
C8—C11—H11C109.5C27—C26—C25120.65 (16)
H11A—C11—H11C109.5C31—C26—C25120.07 (16)
H11B—C11—H11C109.5C26—C27—C28120.15 (17)
C3—C12—C13113.60 (15)C26—C27—H27A119.9
C3—C12—H12A108.8C28—C27—H27A119.9
C13—C12—H12A108.8C29—C28—C27120.34 (18)
C3—C12—H12B108.8C29—C28—H28A119.8
C13—C12—H12B108.8C27—C28—H28A119.8
H12A—C12—H12B107.7C28—C29—C30119.98 (17)
C12—C13—H13A109.5C28—C29—H29A120.0
C12—C13—H13B109.5C30—C29—H29A120.0
H13A—C13—H13B109.5C29—C30—C31119.88 (18)
C12—C13—H13C109.5C29—C30—H30A120.1
H13A—C13—H13C109.5C31—C30—H30A120.1
H13B—C13—H13C109.5C30—C31—C26120.35 (17)
C7—C14—C15113.73 (15)C30—C31—H31A119.8
C7—C14—H14A108.8C26—C31—H31A119.8
D—H···AD—HH···AD···AD—H···A
N1—H1···O3i0.87 (2)2.09 (2)2.9334 (18)163.4 (18)
N2—H2···O3i0.89 (2)2.00 (2)2.8610 (17)162.8 (17)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯O3i0.87 (2)2.09 (2)2.9334 (18)163.4 (18)
N2—H2⋯O3i0.89 (2)2.00 (2)2.8610 (17)162.8 (17)

Symmetry code: (i) .

  3 in total

1.  Expanded Porphyrins and Their Heterologs.

Authors:  Ayub Jasat; David Dolphin
Journal:  Chem Rev       Date:  1997-10-01       Impact factor: 60.622

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  4,4-Difluoro-4-bora-3a,4a-diaza-s-indacene (BODIPY) dyes modified for extended conjugation and restricted bond rotations.

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  3 in total
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1.  Crystal structure and Hirshfeld surface analysis of dibutyl 5,5'-(pentane-3,3-diyl)bis(1H-pyrrole-5-carboxylate).

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Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2019-05-03
  1 in total

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