Literature DB >> 21580315

N'-[1-(4-Amino-phen-yl)ethyl]pyrazine-2-carbohydrazide.

Zhi-Yong Xing, De-Cheng Yu, Lai-Jun Li, Hai-Yan Liu, Jian-Fei Zhang.   

Abstract

The title compound, C(13)H(13)N(5)O, crystallizes with two mol-ecules in the asymmetric unit. The crystal structure is stabilized by intra-molecular N-H⋯N and N-H⋯O hydrogen bonds. The dihedral angles between the pyrazine ring and the 4-aminolphenyl ring are 2.5 (1) and 6.5 (1)° in the two molecules.

Entities:  

Year:  2010        PMID: 21580315      PMCID: PMC2983521          DOI: 10.1107/S1600536810004083

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For applications of the pyrazine ring system in drug development, see: Du et al. (2009 ▶); Dubinina et al. (2006 ▶); Ellsworth et al. (2007 ▶); Mukaiyama et al. (2007 ▶).

Experimental

Crystal data

C13H13N5O M = 255.28 Triclinic, a = 6.9783 (13) Å b = 10.689 (3) Å c = 17.061 (5) Å α = 106.971 (10)° β = 98.499 (4)° γ = 90.174 (14)° V = 1202.3 (5) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 113 K 0.10 × 0.09 × 0.04 mm

Data collection

Rigaku Saturn diffractometer Absorption correction: multi-scan (REQAB; Jacobson, 1998 ▶) T min = 0.991, T max = 0.996 9090 measured reflections 4150 independent reflections 2832 reflections with I > 2σ(I) R int = 0.052

Refinement

R[F 2 > 2σ(F 2)] = 0.069 wR(F 2) = 0.164 S = 1.05 4150 reflections 364 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.26 e Å−3 Δρmin = −0.30 e Å−3 Data collection: CrystalClear (Rigaku/MSC, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalStructure (Rigaku/MSC, 2005 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810004083/hg2638sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810004083/hg2638Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H13N5OZ = 4
Mr = 255.28F(000) = 536
Triclinic, P1Dx = 1.410 Mg m3
a = 6.9783 (13) ÅMo Kα radiation, λ = 0.71070 Å
b = 10.689 (3) ÅCell parameters from 2002 reflections
c = 17.061 (5) Åθ = 2.5–27.8°
α = 106.971 (10)°µ = 0.10 mm1
β = 98.499 (4)°T = 113 K
γ = 90.174 (14)°Platelet, yellow
V = 1202.3 (5) Å30.10 × 0.09 × 0.04 mm
Rigaku Saturn diffractometer4150 independent reflections
Radiation source: rotating anode2832 reflections with I > 2σ(I)
confocalRint = 0.052
Detector resolution: 7.31 pixels mm-1θmax = 25.0°, θmin = 2.0°
ω scansh = −8→8
Absorption correction: multi-scan (REQAB; Jacobson, 1998)k = −11→12
Tmin = 0.991, Tmax = 0.996l = −20→20
9090 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.069Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.164H atoms treated by a mixture of independent and constrained refinement
S = 1.05w = 1/[σ2(Fo2) + (0.0724P)2] where P = (Fo2 + 2Fc2)/3
4150 reflections(Δ/σ)max = 0.001
364 parametersΔρmax = 0.26 e Å3
0 restraintsΔρmin = −0.29 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.8650 (4)0.1637 (3)0.24329 (16)0.0213 (6)
C20.8881 (4)0.0891 (3)0.16283 (16)0.0243 (7)
H20.9195−0.00010.15270.029*
C30.8657 (4)0.1438 (3)0.09828 (17)0.0220 (6)
H30.88230.09130.04450.026*
C40.8193 (4)0.2747 (3)0.11007 (16)0.0197 (6)
C50.7963 (4)0.3486 (3)0.19089 (16)0.0220 (6)
H50.76310.43750.20090.026*
C60.8207 (4)0.2952 (3)0.25550 (17)0.0239 (7)
H60.80740.34830.30960.029*
C70.7939 (4)0.3348 (3)0.04141 (16)0.0217 (6)
C80.8024 (4)0.2514 (3)−0.04611 (16)0.0289 (7)
H8A0.72980.2917−0.08540.043*
H8B0.74510.1638−0.05460.043*
H8C0.93790.2447−0.05520.043*
C90.6961 (4)0.6487 (3)0.02186 (16)0.0217 (6)
C100.6788 (4)0.7066 (3)−0.04848 (16)0.0203 (6)
C110.6397 (4)0.8372 (3)−0.03596 (17)0.0238 (7)
H110.62140.88840.01790.029*
C120.6529 (4)0.8158 (3)−0.17048 (17)0.0268 (7)
H120.64450.8509−0.21590.032*
C130.6926 (4)0.6840 (3)−0.18385 (17)0.0256 (7)
H130.71040.6328−0.23780.031*
C140.4201 (4)0.1709 (3)0.68980 (17)0.0227 (6)
C150.3869 (4)0.0943 (3)0.60680 (17)0.0256 (7)
H150.38570.00160.59360.031*
C160.3557 (4)0.1525 (3)0.54366 (17)0.0249 (7)
H160.33590.09860.48770.030*
C170.3526 (4)0.2884 (3)0.56009 (16)0.0221 (6)
C180.3846 (4)0.3637 (3)0.64354 (17)0.0246 (7)
H180.38360.45640.65690.029*
C190.4175 (4)0.3068 (3)0.70710 (17)0.0250 (7)
H190.43860.36060.76310.030*
C200.3116 (4)0.3502 (3)0.49280 (16)0.0222 (6)
C210.3380 (4)0.2769 (3)0.40568 (17)0.0299 (7)
H21A0.21260.26440.36920.045*
H21B0.38960.19130.40460.045*
H21C0.42890.32710.38650.045*
C220.1804 (4)0.6521 (3)0.46356 (17)0.0242 (7)
C230.1331 (4)0.6910 (3)0.38597 (16)0.0214 (6)
C240.1030 (4)0.8204 (3)0.38957 (17)0.0261 (7)
H240.11260.88390.44240.031*
C250.0467 (4)0.7651 (3)0.24967 (17)0.0262 (7)
H250.01520.78780.19960.031*
C260.0763 (4)0.6349 (3)0.24498 (17)0.0265 (7)
H260.06440.57140.19210.032*
N10.8761 (4)0.1101 (2)0.30779 (15)0.0294 (6)
H1A0.933 (5)0.036 (3)0.3056 (18)0.044*
H1B0.861 (4)0.171 (3)0.361 (2)0.044*
N20.7625 (3)0.4591 (2)0.06300 (13)0.0228 (5)
N30.7388 (3)0.5209 (2)0.00192 (14)0.0224 (6)
H3A0.742 (4)0.482 (3)−0.0522 (17)0.027*
N40.7064 (3)0.6282 (2)−0.12325 (13)0.0228 (5)
N50.6263 (3)0.8945 (2)−0.09690 (14)0.0264 (6)
N60.4577 (4)0.1131 (3)0.75362 (16)0.0289 (6)
H6A0.410 (5)0.029 (3)0.7404 (18)0.043*
H6B0.433 (4)0.168 (3)0.8058 (19)0.043*
N70.2571 (3)0.4699 (2)0.51400 (14)0.0257 (6)
N80.2176 (3)0.5256 (2)0.44979 (14)0.0238 (6)
H80.198 (4)0.475 (3)0.3982 (17)0.029*
N90.1215 (3)0.5968 (2)0.31366 (14)0.0257 (6)
N100.0608 (3)0.8597 (2)0.32169 (14)0.0277 (6)
O10.6759 (3)0.71548 (19)0.09187 (12)0.0328 (5)
O20.1874 (3)0.73296 (19)0.53239 (11)0.0347 (5)
U11U22U33U12U13U23
C10.0209 (14)0.0198 (15)0.0229 (16)−0.0025 (11)−0.0002 (11)0.0074 (12)
C20.0294 (15)0.0212 (16)0.0211 (16)0.0025 (12)0.0050 (12)0.0038 (12)
C30.0214 (14)0.0227 (16)0.0206 (15)0.0012 (12)0.0036 (11)0.0044 (12)
C40.0185 (13)0.0181 (15)0.0241 (16)−0.0013 (11)0.0033 (11)0.0086 (12)
C50.0218 (14)0.0180 (15)0.0263 (16)0.0008 (11)0.0031 (12)0.0069 (12)
C60.0284 (15)0.0227 (16)0.0204 (15)0.0025 (12)0.0053 (12)0.0050 (12)
C70.0167 (13)0.0245 (16)0.0220 (15)−0.0024 (11)0.0026 (11)0.0042 (12)
C80.0337 (16)0.0316 (18)0.0224 (16)0.0013 (13)0.0044 (13)0.0092 (13)
C90.0239 (14)0.0208 (16)0.0204 (16)−0.0003 (12)0.0022 (12)0.0066 (12)
C100.0170 (13)0.0212 (15)0.0221 (15)0.0008 (11)0.0043 (11)0.0048 (12)
C110.0236 (15)0.0249 (16)0.0221 (16)−0.0021 (12)0.0019 (12)0.0064 (13)
C120.0265 (15)0.0317 (18)0.0258 (17)0.0006 (13)0.0026 (12)0.0147 (14)
C130.0255 (15)0.0332 (18)0.0192 (15)0.0011 (13)0.0047 (12)0.0088 (13)
C140.0199 (14)0.0238 (16)0.0262 (16)0.0032 (12)0.0066 (12)0.0087 (13)
C150.0293 (16)0.0211 (16)0.0287 (17)0.0026 (12)0.0099 (13)0.0082 (13)
C160.0292 (15)0.0238 (16)0.0215 (16)0.0011 (12)0.0067 (12)0.0050 (12)
C170.0195 (14)0.0248 (16)0.0219 (15)0.0026 (12)0.0046 (11)0.0063 (12)
C180.0248 (15)0.0216 (16)0.0267 (16)0.0031 (12)0.0020 (12)0.0071 (13)
C190.0222 (14)0.0301 (17)0.0205 (15)−0.0007 (12)0.0022 (12)0.0043 (13)
C200.0194 (14)0.0277 (17)0.0197 (15)−0.0007 (12)0.0040 (11)0.0069 (13)
C210.0376 (17)0.0279 (17)0.0244 (17)0.0056 (13)0.0060 (13)0.0074 (13)
C220.0219 (14)0.0234 (16)0.0265 (17)−0.0014 (12)0.0035 (12)0.0061 (13)
C230.0207 (14)0.0235 (16)0.0198 (15)−0.0002 (12)0.0049 (11)0.0053 (12)
C240.0303 (16)0.0268 (17)0.0211 (16)0.0037 (13)0.0058 (12)0.0060 (13)
C250.0258 (15)0.0317 (18)0.0235 (16)0.0078 (13)0.0043 (12)0.0113 (14)
C260.0269 (15)0.0300 (17)0.0203 (16)0.0018 (13)0.0050 (12)0.0036 (13)
N10.0450 (16)0.0207 (15)0.0250 (14)0.0080 (12)0.0097 (12)0.0087 (12)
N20.0246 (13)0.0237 (14)0.0217 (13)0.0013 (10)0.0013 (10)0.0103 (11)
N30.0290 (13)0.0224 (14)0.0166 (13)0.0012 (10)0.0036 (10)0.0073 (11)
N40.0238 (12)0.0244 (13)0.0203 (13)0.0017 (10)0.0044 (10)0.0064 (10)
N50.0277 (13)0.0249 (14)0.0292 (14)−0.0004 (10)0.0057 (10)0.0116 (11)
N60.0358 (15)0.0285 (15)0.0267 (15)0.0041 (12)0.0074 (11)0.0135 (12)
N70.0305 (13)0.0272 (14)0.0224 (13)0.0024 (11)0.0057 (10)0.0110 (11)
N80.0300 (13)0.0231 (14)0.0176 (13)0.0013 (10)0.0028 (10)0.0055 (11)
N90.0250 (12)0.0284 (14)0.0227 (13)0.0024 (10)0.0033 (10)0.0062 (11)
N100.0305 (13)0.0252 (14)0.0289 (14)0.0031 (11)0.0058 (11)0.0096 (11)
O10.0459 (13)0.0313 (12)0.0214 (12)0.0075 (10)0.0080 (9)0.0068 (9)
O20.0509 (14)0.0298 (12)0.0199 (12)0.0042 (10)0.0042 (9)0.0027 (9)
C1—N11.374 (3)C15—H150.9500
C1—C61.402 (4)C16—C171.398 (4)
C1—C21.405 (3)C16—H160.9500
C2—C31.380 (4)C17—C181.400 (4)
C2—H20.9500C17—C201.477 (4)
C3—C41.400 (3)C18—C191.383 (4)
C3—H30.9500C18—H180.9500
C4—C51.408 (4)C19—H190.9500
C4—C71.481 (4)C20—N71.298 (3)
C5—C61.372 (4)C20—C211.503 (4)
C5—H50.9500C21—H21A0.9800
C6—H60.9500C21—H21B0.9800
C7—N21.300 (3)C21—H21C0.9800
C7—C81.509 (4)C22—O21.232 (3)
C8—H8A0.9800C22—N81.336 (3)
C8—H8B0.9800C22—C231.493 (4)
C8—H8C0.9800C23—N91.337 (3)
C9—O11.228 (3)C23—C241.385 (4)
C9—N31.353 (3)C24—N101.337 (3)
C9—C101.493 (4)C24—H240.9500
C10—N41.348 (3)C25—N101.334 (3)
C10—C111.383 (4)C25—C261.388 (4)
C11—N51.345 (3)C25—H250.9500
C11—H110.9500C26—N91.345 (3)
C12—N51.331 (3)C26—H260.9500
C12—C131.395 (4)N1—H1A0.88 (3)
C12—H120.9500N1—H1B0.97 (3)
C13—N41.329 (3)N2—N31.379 (3)
C13—H130.9500N3—H3A0.90 (3)
C14—N61.394 (4)N6—H6A0.91 (3)
C14—C191.396 (4)N6—H6B0.95 (3)
C14—C151.398 (4)N7—N81.387 (3)
C15—C161.384 (4)N8—H80.88 (3)
N1—C1—C6120.2 (2)C16—C17—C18117.0 (2)
N1—C1—C2122.1 (3)C16—C17—C20121.7 (2)
C6—C1—C2117.6 (2)C18—C17—C20121.3 (3)
C3—C2—C1120.8 (3)C19—C18—C17121.8 (3)
C3—C2—H2119.6C19—C18—H18119.1
C1—C2—H2119.6C17—C18—H18119.1
C2—C3—C4121.7 (2)C18—C19—C14120.6 (3)
C2—C3—H3119.1C18—C19—H19119.7
C4—C3—H3119.1C14—C19—H19119.7
C3—C4—C5117.1 (2)N7—C20—C17116.3 (2)
C3—C4—C7122.4 (2)N7—C20—C21123.2 (2)
C5—C4—C7120.5 (2)C17—C20—C21120.5 (2)
C6—C5—C4121.4 (3)C20—C21—H21A109.5
C6—C5—H5119.3C20—C21—H21B109.5
C4—C5—H5119.3H21A—C21—H21B109.5
C5—C6—C1121.3 (3)C20—C21—H21C109.5
C5—C6—H6119.3H21A—C21—H21C109.5
C1—C6—H6119.3H21B—C21—H21C109.5
N2—C7—C4115.2 (2)O2—C22—N8125.4 (3)
N2—C7—C8125.0 (2)O2—C22—C23121.2 (3)
C4—C7—C8119.8 (2)N8—C22—C23113.5 (2)
C7—C8—H8A109.5N9—C23—C24121.7 (2)
C7—C8—H8B109.5N9—C23—C22117.6 (2)
H8A—C8—H8B109.5C24—C23—C22120.7 (2)
C7—C8—H8C109.5N10—C24—C23122.7 (3)
H8A—C8—H8C109.5N10—C24—H24118.7
H8B—C8—H8C109.5C23—C24—H24118.7
O1—C9—N3124.3 (3)N10—C25—C26122.6 (3)
O1—C9—C10121.0 (2)N10—C25—H25118.7
N3—C9—C10114.7 (2)C26—C25—H25118.7
N4—C10—C11121.8 (2)N9—C26—C25121.5 (2)
N4—C10—C9117.7 (2)N9—C26—H26119.3
C11—C10—C9120.5 (2)C25—C26—H26119.3
N5—C11—C10122.7 (3)C1—N1—H1A121 (2)
N5—C11—H11118.6C1—N1—H1B114.9 (18)
C10—C11—H11118.6H1A—N1—H1B120 (3)
N5—C12—C13122.9 (3)C7—N2—N3117.9 (2)
N5—C12—H12118.5C9—N3—N2119.2 (2)
C13—C12—H12118.5C9—N3—H3A115.6 (17)
N4—C13—C12121.9 (3)N2—N3—H3A125.0 (17)
N4—C13—H13119.1C13—N4—C10115.8 (2)
C12—C13—H13119.1C12—N5—C11114.9 (2)
N6—C14—C19120.8 (3)C14—N6—H6A114.6 (19)
N6—C14—C15120.9 (3)C14—N6—H6B113.5 (18)
C19—C14—C15118.3 (2)H6A—N6—H6B114 (3)
C16—C15—C14120.6 (3)C20—N7—N8115.4 (2)
C16—C15—H15119.7C22—N8—N7121.9 (2)
C14—C15—H15119.7C22—N8—H8117.4 (18)
C15—C16—C17121.7 (3)N7—N8—H8119.9 (18)
C15—C16—H16119.1C23—N9—C26116.1 (2)
C17—C16—H16119.1C25—N10—C24115.4 (2)
N1—C1—C2—C3176.4 (2)C16—C17—C20—N7160.7 (2)
C6—C1—C2—C3−0.7 (4)C18—C17—C20—N7−17.4 (4)
C1—C2—C3—C4−0.1 (4)C16—C17—C20—C21−20.8 (4)
C2—C3—C4—C50.1 (4)C18—C17—C20—C21161.1 (3)
C2—C3—C4—C7−179.7 (2)O2—C22—C23—N9−177.7 (2)
C3—C4—C5—C60.8 (4)N8—C22—C23—N94.0 (3)
C7—C4—C5—C6−179.4 (2)O2—C22—C23—C242.5 (4)
C4—C5—C6—C1−1.6 (4)N8—C22—C23—C24−175.9 (2)
N1—C1—C6—C5−175.7 (2)N9—C23—C24—N100.0 (4)
C2—C1—C6—C51.5 (4)C22—C23—C24—N10179.8 (2)
C3—C4—C7—N2−176.1 (2)N10—C25—C26—N9−0.1 (4)
C5—C4—C7—N24.2 (3)C4—C7—N2—N3179.6 (2)
C3—C4—C7—C84.9 (4)C8—C7—N2—N3−1.4 (4)
C5—C4—C7—C8−174.9 (2)O1—C9—N3—N2−0.1 (4)
O1—C9—C10—N4178.8 (2)C10—C9—N3—N2178.5 (2)
N3—C9—C10—N40.1 (3)C7—N2—N3—C9176.7 (2)
O1—C9—C10—C110.0 (4)C12—C13—N4—C100.2 (4)
N3—C9—C10—C11−178.6 (2)C11—C10—N4—C13−0.3 (4)
N4—C10—C11—N50.0 (4)C9—C10—N4—C13−179.0 (2)
C9—C10—C11—N5178.7 (2)C13—C12—N5—C11−0.3 (4)
N5—C12—C13—N40.1 (4)C10—C11—N5—C120.3 (4)
N6—C14—C15—C16−178.0 (2)C17—C20—N7—N8−179.4 (2)
C19—C14—C15—C161.1 (4)C21—C20—N7—N82.1 (4)
C14—C15—C16—C17−1.2 (4)O2—C22—N8—N74.3 (4)
C15—C16—C17—C180.7 (4)C23—C22—N8—N7−177.4 (2)
C15—C16—C17—C20−177.5 (2)C20—N7—N8—C22−172.7 (2)
C16—C17—C18—C19−0.1 (4)C24—C23—N9—C26−0.9 (4)
C20—C17—C18—C19178.1 (2)C22—C23—N9—C26179.2 (2)
C17—C18—C19—C140.1 (4)C25—C26—N9—C231.0 (4)
N6—C14—C19—C18178.5 (2)C26—C25—N10—C24−0.9 (4)
C15—C14—C19—C18−0.6 (4)C23—C24—N10—C250.9 (4)
D—H···AD—HH···AD···AD—H···A
N1—H1A···N10i0.88 (3)2.16 (3)3.030 (4)170 (3)
N1—H1B···O2ii0.97 (3)1.89 (3)2.852 (3)171 (3)
N6—H6A···N1iii0.91 (3)2.38 (3)3.162 (4)145 (3)
N6—H6B···O1ii0.95 (3)2.07 (3)3.015 (3)169 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯N10i0.88 (3)2.16 (3)3.030 (4)170 (3)
N1—H1B⋯O2ii0.97 (3)1.89 (3)2.852 (3)171 (3)
N6—H6A⋯N1iii0.91 (3)2.38 (3)3.162 (4)145 (3)
N6—H6B⋯O1ii0.95 (3)2.07 (3)3.015 (3)169 (3)

Symmetry codes: (i) ; (ii) ; (iii) .

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Journal:  Bioorg Med Chem       Date:  2006-10-24       Impact factor: 3.641

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Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

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Journal:  Eur J Med Chem       Date:  2006-05-03       Impact factor: 6.514

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5.  Discovery of pyrazine carboxamide CB1 antagonists: the introduction of a hydroxyl group improves the pharmaceutical properties and in vivo efficacy of the series.

Authors:  Bruce A Ellsworth; Ying Wang; Yeheng Zhu; Annapurna Pendri; Samuel W Gerritz; Chongqing Sun; Kenneth E Carlson; Liya Kang; Rose A Baska; Yifan Yang; Qi Huang; Neil T Burford; Mary Jane Cullen; Susan Johnghar; Kamelia Behnia; Mary Ann Pelleymounter; William N Washburn; William R Ewing
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