Literature DB >> 21580256

Diaquabis-[3-(hydroxy-imino-)butanoato]nickel(II): a triclinic polymorph.

Valentina A Kalibabchuk, Nikolay M Dudarenko, Turganbay S Iskenderov, Maria L Malysheva, Elżbieta Gumienna-Kontecka.   

Abstract

The title centrosymmetric mononuclear complex, [Ni(C(4)H(6)NO(3))(2)(H(2)O)(2)], is a polymorph of the previously reported complex [Dudarenko et al. (2010 ▶). Acta Cryst. E66, m277-m278]. The Ni(II) atom, lying on an inversion center, is six-coordinated by two carboxyl-ate O atoms and two oxime N atoms from two trans-disposed chelating 3-hydroxy-imino-butanoate ligands and two axial water mol-ecules in a distorted octa-hedral geometry. The hydr-oxy group forms an intra-molecular hydrogen bond with the coordinated carboxyl-ate O atom. The complex mol-ecules are linked in stacks along [010] by a hydrogen bond between the water O atom and the carboxyl-ate O atom of a neighboring mol-ecule. The stacks are further linked by O-H⋯O hydrogen bonds into a layer parallel to (001).

Entities:  

Year:  2010        PMID: 21580256      PMCID: PMC2983669          DOI: 10.1107/S1600536810006306

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the monoclinic polymorph of the title compound, see: Dudarenko et al. (2010 ▶). For the coordination chemistry of hydroxy­imino­carboxylic acids and their derivatives, see: Duda et al. (1997 ▶); Mokhir et al. (2002 ▶); Moroz et al. (2008 ▶); Onindo et al. (1995 ▶). For 2-hydroxy­imino­carboxylic acids as efficient metal chelators, see: Gumienna-Kontecka et al. (2000 ▶); Sliva et al. (1997a ▶,b ▶). For the use of 2-hydroxy­imino­carboxylic acid derivatives as efficient ligands for stabilization of high oxidation states of transitional metals, see: Fritsky et al. (2006 ▶); Kanderal et al. (2005 ▶). For structures with monodentately coordinated carboxyl­ate groups, see: Wörl et al. (2005a ▶,b ▶). For the ligand synthesis, see: Khromov (1950 ▶).

Experimental

Crystal data

[Ni(C4H6NO3)2(H2O)2] M = 326.92 Triclinic, a = 5.5621 (14) Å b = 7.340 (2) Å c = 8.2979 (15) Å α = 90.71 (2)° β = 92.290 (18)° γ = 112.18 (2)° V = 313.31 (14) Å3 Z = 1 Mo Kα radiation μ = 1.59 mm−1 T = 120 K 0.22 × 0.14 × 0.10 mm

Data collection

Nonius KappaCCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.764, T max = 0.856 2755 measured reflections 1223 independent reflections 1054 reflections with I > 2σ(I) R int = 0.063

Refinement

R[F 2 > 2σ(F 2)] = 0.036 wR(F 2) = 0.083 S = 0.98 1223 reflections 101 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.37 e Å−3 Δρmin = −0.35 e Å−3 Data collection: COLLECT (Nonius, 1998 ▶); cell refinement: DENZO/SCALEPACK (Otwinowski & Minor, 1997 ▶); data reduction: DENZO/SCALEPACK; program(s) used to solve structure: SIR2004 (Burla et al., 2005 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810006306/hy2284sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810006306/hy2284Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Ni(C4H6NO3)2(H2O)2]Z = 1
Mr = 326.92F(000) = 170
Triclinic, P1Dx = 1.733 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 5.5621 (14) ÅCell parameters from 1225 reflections
b = 7.340 (2) Åθ = 3.9–36.0°
c = 8.2979 (15) ŵ = 1.59 mm1
α = 90.71 (2)°T = 120 K
β = 92.290 (18)°Block, dark pink
γ = 112.18 (2)°0.22 × 0.14 × 0.10 mm
V = 313.31 (14) Å3
Nonius KappaCCD diffractometer1223 independent reflections
Radiation source: fine-focus sealed tube1054 reflections with I > 2σ(I)
horizontally mounted graphite crystalRint = 0.063
Detector resolution: 9 pixels mm-1θmax = 26.0°, θmin = 3.8°
φ and ω scans with κ offseth = −6→6
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)k = −9→9
Tmin = 0.764, Tmax = 0.856l = −10→10
2755 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.036Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.083H atoms treated by a mixture of independent and constrained refinement
S = 0.98w = 1/[σ2(Fo2) + (0.0431P)2] where P = (Fo2 + 2Fc2)/3
1223 reflections(Δ/σ)max < 0.001
101 parametersΔρmax = 0.37 e Å3
0 restraintsΔρmin = −0.35 e Å3
xyzUiso*/Ueq
Ni10.00000.00000.00000.0293 (2)
O1−0.1803 (4)0.1846 (3)0.0358 (2)0.0363 (5)
O2−0.2828 (4)0.4116 (3)0.1563 (3)0.0418 (5)
O30.3067 (5)−0.0513 (4)0.2814 (3)0.0521 (7)
O40.3222 (4)0.2337 (3)−0.0904 (3)0.0349 (5)
N10.1703 (4)0.0643 (3)0.2262 (3)0.0309 (5)
C1−0.1519 (5)0.3071 (4)0.1501 (3)0.0298 (6)
C20.0492 (7)0.3370 (6)0.2868 (4)0.0537 (9)
H2A0.19020.46080.26780.064*
H2B−0.02980.35780.38400.064*
C30.1734 (5)0.1944 (4)0.3286 (3)0.0304 (6)
C40.3120 (7)0.2237 (5)0.4912 (3)0.0452 (8)
H4A0.29520.09820.53280.068*
H4B0.23690.28830.56350.068*
H4C0.49260.30330.48160.068*
H1O0.315 (8)−0.112 (6)0.210 (5)0.065 (14)*
H4O10.428 (9)0.268 (7)−0.018 (6)0.081 (16)*
H4O20.284 (8)0.322 (7)−0.111 (5)0.063 (13)*
U11U22U33U12U13U23
Ni10.0312 (3)0.0324 (3)0.0284 (3)0.0174 (2)−0.00632 (19)−0.00037 (19)
O10.0400 (12)0.0406 (12)0.0364 (10)0.0259 (10)−0.0105 (8)−0.0039 (9)
O20.0405 (12)0.0347 (11)0.0583 (12)0.0242 (10)−0.0057 (10)−0.0012 (10)
O30.0778 (18)0.0612 (17)0.0394 (12)0.0541 (15)−0.0208 (11)−0.0069 (11)
O40.0372 (13)0.0324 (12)0.0378 (11)0.0169 (10)−0.0043 (9)0.0020 (9)
N10.0321 (13)0.0348 (13)0.0310 (11)0.0189 (11)−0.0046 (9)0.0061 (10)
C10.0267 (14)0.0253 (14)0.0384 (14)0.0112 (12)−0.0005 (11)0.0044 (11)
C20.060 (2)0.053 (2)0.058 (2)0.0357 (18)−0.0244 (16)−0.0216 (16)
C30.0286 (14)0.0334 (15)0.0288 (13)0.0116 (12)−0.0020 (11)0.0017 (11)
C40.055 (2)0.0475 (19)0.0314 (15)0.0186 (16)−0.0112 (13)−0.0036 (13)
Ni1—O11.992 (2)N1—C31.265 (4)
Ni1—N12.035 (2)C1—C21.514 (4)
Ni1—O42.130 (2)C2—C31.493 (4)
O1—C11.262 (4)C2—H2A0.9700
O2—C11.243 (4)C2—H2B0.9700
O3—N11.405 (3)C3—C41.499 (4)
O3—H1O0.75 (4)C4—H4A0.9600
O4—H4O10.79 (5)C4—H4B0.9600
O4—H4O20.77 (5)C4—H4C0.9600
O1i—Ni1—O1180.00 (13)C3—N1—Ni1130.1 (2)
O1i—Ni1—N189.62 (9)O3—N1—Ni1116.79 (18)
O1—Ni1—N190.38 (9)O2—C1—O1122.5 (3)
O1i—Ni1—N1i90.38 (9)O2—C1—C2116.2 (3)
O1—Ni1—N1i89.62 (9)O1—C1—C2121.3 (3)
N1—Ni1—N1i180.00 (15)C3—C2—C1124.7 (3)
O1i—Ni1—O4i90.13 (9)C3—C2—H2A106.1
O1—Ni1—O4i89.87 (9)C1—C2—H2A106.1
N1—Ni1—O4i90.34 (9)C3—C2—H2B106.1
N1i—Ni1—O4i89.66 (9)C1—C2—H2B106.1
O1i—Ni1—O489.87 (9)H2A—C2—H2B106.3
O1—Ni1—O490.13 (9)N1—C3—C2120.3 (2)
N1—Ni1—O489.66 (9)N1—C3—C4123.3 (3)
N1i—Ni1—O490.34 (9)C2—C3—C4116.3 (3)
O4i—Ni1—O4180.00 (15)C3—C4—H4A109.5
C1—O1—Ni1130.05 (18)C3—C4—H4B109.5
N1—O3—H1O106 (3)H4A—C4—H4B109.5
Ni1—O4—H4O1106 (3)C3—C4—H4C109.5
Ni1—O4—H4O2111 (3)H4A—C4—H4C109.5
H4O1—O4—H4O2107 (4)H4B—C4—H4C109.5
C3—N1—O3113.1 (2)
Ni1—O1—C1—O2−179.15 (18)Ni1—N1—C3—C2−3.3 (4)
Ni1—O1—C1—C21.9 (4)O3—N1—C3—C40.8 (4)
O2—C1—C2—C3162.2 (3)Ni1—N1—C3—C4−179.4 (2)
O1—C1—C2—C3−18.8 (5)C1—C2—C3—N119.2 (5)
O3—N1—C3—C2176.9 (3)C1—C2—C3—C4−164.4 (3)
D—H···AD—HH···AD···AD—H···A
O3—H1O···O1i0.75 (4)2.14 (4)2.766 (3)142 (4)
O4—H4O1···O2ii0.79 (5)2.07 (5)2.851 (3)169 (5)
O4—H4O1···O1ii0.79 (5)2.50 (5)3.068 (3)130 (4)
O4—H4O2···O2iii0.77 (5)2.00 (5)2.754 (3)166 (4)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O3—H1O⋯O1i0.75 (4)2.14 (4)2.766 (3)142 (4)
O4—H4O1⋯O2ii0.79 (5)2.07 (5)2.851 (3)169 (5)
O4—H4O1⋯O1ii0.79 (5)2.50 (5)3.068 (3)130 (4)
O4—H4O2⋯O2iii0.77 (5)2.00 (5)2.754 (3)166 (4)

Symmetry codes: (i) ; (ii) ; (iii) .

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