| Literature DB >> 21580224 |
Nikolay M Dudarenko, Valentina A Kalibabchuk, Maria L Malysheva, Turganbay S Iskenderov, Elżbieta Gumienna-Kontecka.
Abstract
In the neutral, mononuclear title complex, [Ni(C(4)H(6)NO(3))(2)(H(2)O)(2)], the Ni atom lies on a crystallographic inversion centre within a distorted octa-hedral N(2)O(4) environment. Two trans-disposed anions of 3-hydroxy-imino-butanoic acid occupy four equatorial sites, coordinated by the deprotonated carboxyl-ate and protonated oxime groups and forming six-membered chelate rings, while the two axial positions are occupied by the water O atoms. The O atom of the oxime group forms an intra-molecular hydrogen bond with the coordinated carboxyl-ate O atom. The complex mol-ecules are linked into chains along b by hydrogen bonds between the water O atom and the carboxyl-ate O of a neighbouring mol-ecule. The chains are linked by further hydrogen bonds into a layer structure.Entities:
Year: 2010 PMID: 21580224 PMCID: PMC2983569 DOI: 10.1107/S1600536810004605
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [Ni(C4H6NO3)2(H2O)2] | |
| Monoclinic, | Mo |
| Hall symbol: -P 2yn | Cell parameters from 3254 reflections |
| θ = 3.6–27.5° | |
| µ = 1.56 mm−1 | |
| β = 107.557 (5)° | Block, lilac |
| 0.23 × 0.15 × 0.11 mm | |
| Nonius KappaCCD diffractometer | 1626 independent reflections |
| Radiation source: fine-focus sealed tube | 1286 reflections with |
| horizontally mounted graphite crystal | |
| Detector resolution: 9 pixels mm-1 | θmax = 36.4°, θmin = 3.6° |
| φ scans and ω scans with κ offset | |
| Absorption correction: multi-scan ( | |
| 4576 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 1626 reflections | (Δ/σ)max < 0.001 |
| 101 parameters | Δρmax = 0.35 e Å−3 |
| 0 restraints | Δρmin = −0.32 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| Ni1 | 0.0000 | 0.0000 | 0.0000 | 0.00914 (9) | |
| O1 | −0.07925 (12) | 0.23226 (15) | −0.10969 (11) | 0.0129 (2) | |
| O2 | −0.16372 (12) | 0.51946 (16) | −0.14813 (12) | 0.0144 (3) | |
| O3 | 0.00013 (14) | −0.01018 (19) | 0.30386 (13) | 0.0163 (3) | |
| O4 | −0.20766 (13) | −0.12137 (18) | −0.07790 (13) | 0.0129 (3) | |
| N1 | −0.05011 (15) | 0.09879 (19) | 0.17719 (13) | 0.0114 (3) | |
| C1 | −0.13309 (17) | 0.3773 (2) | −0.07010 (16) | 0.0110 (3) | |
| C2 | −0.1685 (2) | 0.3862 (2) | 0.07312 (17) | 0.0150 (3) | |
| H2A | −0.1448 | 0.5116 | 0.1102 | 0.018* | |
| H2B | −0.2736 | 0.3737 | 0.0495 | 0.018* | |
| C3 | −0.10320 (18) | 0.2559 (2) | 0.19819 (17) | 0.0122 (3) | |
| C4 | −0.1086 (2) | 0.3230 (3) | 0.34280 (18) | 0.0226 (4) | |
| H4A | −0.0824 | 0.2229 | 0.4116 | 0.034* | |
| H4B | −0.2056 | 0.3649 | 0.3350 | 0.034* | |
| H4C | −0.0412 | 0.4243 | 0.3746 | 0.034* | |
| H1O3 | 0.038 (3) | −0.085 (3) | 0.281 (2) | 0.026 (7)* | |
| H1O4 | −0.253 (3) | −0.063 (3) | −0.158 (3) | 0.036 (6)* | |
| H2O4 | −0.201 (2) | −0.227 (3) | −0.099 (2) | 0.028 (6)* |
| Ni1 | 0.01179 (16) | 0.00714 (14) | 0.00827 (13) | 0.00080 (13) | 0.00266 (10) | −0.00010 (12) |
| O1 | 0.0177 (7) | 0.0086 (6) | 0.0119 (5) | 0.0016 (5) | 0.0037 (5) | 0.0000 (4) |
| O2 | 0.0171 (6) | 0.0095 (6) | 0.0139 (5) | 0.0014 (5) | 0.0004 (5) | 0.0008 (4) |
| O3 | 0.0226 (7) | 0.0163 (6) | 0.0109 (5) | 0.0079 (6) | 0.0066 (5) | 0.0046 (5) |
| O4 | 0.0156 (7) | 0.0096 (6) | 0.0126 (6) | 0.0009 (5) | 0.0029 (5) | −0.0003 (5) |
| N1 | 0.0119 (7) | 0.0131 (7) | 0.0085 (6) | 0.0000 (6) | 0.0021 (5) | 0.0022 (5) |
| C1 | 0.0082 (8) | 0.0095 (8) | 0.0120 (7) | −0.0021 (6) | −0.0021 (6) | −0.0014 (6) |
| C2 | 0.0173 (9) | 0.0119 (8) | 0.0167 (8) | 0.0029 (7) | 0.0064 (7) | −0.0011 (6) |
| C3 | 0.0104 (8) | 0.0138 (8) | 0.0130 (7) | −0.0012 (7) | 0.0042 (6) | −0.0016 (6) |
| C4 | 0.0324 (12) | 0.0199 (10) | 0.0177 (9) | 0.0072 (8) | 0.0110 (8) | −0.0031 (7) |
| Ni1—O1i | 1.9986 (10) | O4—H2O4 | 0.79 (2) |
| Ni1—O1 | 1.9986 (10) | N1—C3 | 1.278 (2) |
| Ni1—N1 | 2.0431 (13) | C1—C2 | 1.525 (2) |
| Ni1—N1i | 2.0431 (13) | C2—C3 | 1.508 (2) |
| Ni1—O4i | 2.0973 (12) | C2—H2A | 0.9700 |
| Ni1—O4 | 2.0973 (12) | C2—H2B | 0.9700 |
| O1—C1 | 1.2714 (18) | C3—C4 | 1.496 (2) |
| O2—C1 | 1.2499 (19) | C4—H4A | 0.9600 |
| O3—N1 | 1.4108 (17) | C4—H4B | 0.9600 |
| O3—H1O3 | 0.72 (2) | C4—H4C | 0.9600 |
| O4—H1O4 | 0.87 (3) | ||
| O1i—Ni1—O1 | 180.00 (7) | C3—N1—Ni1 | 130.22 (11) |
| O1i—Ni1—N1 | 89.51 (5) | O3—N1—Ni1 | 115.60 (10) |
| O1—Ni1—N1 | 90.49 (5) | O2—C1—O1 | 121.88 (14) |
| O1i—Ni1—N1i | 90.49 (5) | O2—C1—C2 | 116.05 (14) |
| O1—Ni1—N1i | 89.51 (5) | O1—C1—C2 | 122.04 (14) |
| N1—Ni1—N1i | 180.00 (7) | C3—C2—C1 | 123.47 (14) |
| O1i—Ni1—O4i | 89.21 (5) | C3—C2—H2A | 106.5 |
| O1—Ni1—O4i | 90.79 (5) | C1—C2—H2A | 106.5 |
| N1—Ni1—O4i | 89.63 (5) | C3—C2—H2B | 106.5 |
| N1i—Ni1—O4i | 90.37 (5) | C1—C2—H2B | 106.5 |
| O1i—Ni1—O4 | 90.79 (5) | H2A—C2—H2B | 106.5 |
| O1—Ni1—O4 | 89.21 (5) | N1—C3—C4 | 124.10 (15) |
| N1—Ni1—O4 | 90.37 (5) | N1—C3—C2 | 120.51 (14) |
| N1i—Ni1—O4 | 89.63 (5) | C4—C3—C2 | 115.38 (14) |
| O4i—Ni1—O4 | 180.00 (4) | C3—C4—H4A | 109.5 |
| C1—O1—Ni1 | 130.26 (10) | C3—C4—H4B | 109.5 |
| N1—O3—H1O3 | 102.5 (18) | H4A—C4—H4B | 109.5 |
| Ni1—O4—H1O4 | 106.8 (16) | C3—C4—H4C | 109.5 |
| Ni1—O4—H2O4 | 110.0 (15) | H4A—C4—H4C | 109.5 |
| H1O4—O4—H2O4 | 107 (2) | H4B—C4—H4C | 109.5 |
| C3—N1—O3 | 113.48 (13) | ||
| N1i—Ni1—O1—C1 | −178.29 (14) | Ni1—O1—C1—O2 | 172.23 (11) |
| O4i—Ni1—O1—C1 | −87.93 (13) | Ni1—O1—C1—C2 | −9.7 (2) |
| O4—Ni1—O1—C1 | 92.07 (13) | O2—C1—C2—C3 | −162.17 (15) |
| O1i—Ni1—N1—C3 | 176.44 (15) | O1—C1—C2—C3 | 19.6 (2) |
| O1—Ni1—N1—C3 | −3.56 (15) | O3—N1—C3—C4 | 1.8 (2) |
| O4i—Ni1—N1—C3 | 87.23 (15) | Ni1—N1—C3—C4 | −168.07 (13) |
| O4—Ni1—N1—C3 | −92.77 (15) | O3—N1—C3—C2 | −177.11 (14) |
| O1i—Ni1—N1—O3 | 6.79 (10) | Ni1—N1—C3—C2 | 13.1 (2) |
| O1—Ni1—N1—O3 | −173.21 (10) | C1—C2—C3—N1 | −21.1 (2) |
| O4i—Ni1—N1—O3 | −82.43 (10) | C1—C2—C3—C4 | 159.90 (16) |
| O4—Ni1—N1—O3 | 97.57 (10) |
| H··· | ||||
| O4—H2O4···O2ii | 0.79 (2) | 1.94 (2) | 2.7293 (17) | 175 (2) |
| O3—H1O3···O1i | 0.72 (2) | 2.10 (2) | 2.7404 (17) | 148 (2) |
| O4—H1O4···O2iii | 0.87 (3) | 1.90 (3) | 2.7576 (16) | 167 (2) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O4—H2 | 0.79 (2) | 1.94 (2) | 2.7293 (17) | 175 (2) |
| O3—H1 | 0.72 (2) | 2.10 (2) | 2.7404 (17) | 148 (2) |
| O4—H1 | 0.87 (3) | 1.90 (3) | 2.7576 (16) | 167 (2) |
Symmetry codes: (i) ; (ii) ; (iii) .