Literature DB >> 21580224

Diaquabis-[3-(hydroxy-imino)-butanoato]nickel(II).

Nikolay M Dudarenko, Valentina A Kalibabchuk, Maria L Malysheva, Turganbay S Iskenderov, Elżbieta Gumienna-Kontecka.   

Abstract

In the neutral, mononuclear title complex, [Ni(C(4)H(6)NO(3))(2)(H(2)O)(2)], the Ni atom lies on a crystallographic inversion centre within a distorted octa-hedral N(2)O(4) environment. Two trans-disposed anions of 3-hydroxy-imino-butanoic acid occupy four equatorial sites, coordinated by the deprotonated carboxyl-ate and protonated oxime groups and forming six-membered chelate rings, while the two axial positions are occupied by the water O atoms. The O atom of the oxime group forms an intra-molecular hydrogen bond with the coordinated carboxyl-ate O atom. The complex mol-ecules are linked into chains along b by hydrogen bonds between the water O atom and the carboxyl-ate O of a neighbouring mol-ecule. The chains are linked by further hydrogen bonds into a layer structure.

Entities:  

Year:  2010        PMID: 21580224      PMCID: PMC2983569          DOI: 10.1107/S1600536810004605

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the coordination chemistry of 2-hydroxy­imino­propanoic acid and its amide derivatives, see: Onindo et al. (1995 ▶); Duda et al. (1997 ▶); Moroz et al. (2008 ▶). For 2-hydroxy­imino­carboxylic acids as efficient metal chelators, see: Onindo et al. (1995 ▶); Sliva et al. (1997a ▶,b ▶); Gumienna-Kontecka et al. (2000 ▶). For the use of 2-hydroxy­imino­carboxylic acid derivatives as efficient ligands for the stabilization of high oxidation states of transitional metals, see: Fritsky et al. (1998 ▶, 2006 ▶). For the structures of hydroxy­imino­carboxylic acid derivatives, see: Onindo et al. (1995 ▶); Sliva et al. (1997a ▶,b ▶); Mokhir et al. (2002 ▶). For structures with monodentately coordinated carboxylic groups, see: Wörl et al. (2005a ▶,b ▶). For the synthesis, see: Khromov (1950 ▶).

Experimental

Crystal data

[Ni(C4H6NO3)2(H2O)2] M = 326.94 Monoclinic, a = 9.6071 (9) Å b = 7.1721 (7) Å c = 9.6805 (9) Å β = 107.557 (5)° V = 635.94 (10) Å3 Z = 2 Mo Kα radiation μ = 1.56 mm−1 T = 120 K 0.23 × 0.15 × 0.11 mm

Data collection

Nonius KappaCCD diffractometer Absorption correction: multi-scan (SADABS, Sheldrick, 2001 ▶) T min = 0.622, T max = 0.796 4576 measured reflections 1626 independent reflections 1286 reflections with I > 2σ(I) R int = 0.032

Refinement

R[F 2 > 2σ(F 2)] = 0.025 wR(F 2) = 0.060 S = 1.05 1626 reflections 101 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.35 e Å−3 Δρmin = −0.32 e Å−3 Data collection: COLLECT (Nonius, 2000 ▶); cell refinement: DENZO/SCALEPACK (Otwinowski & Minor, 1997 ▶); data reduction: DENZO/SCALEPACK; program(s) used to solve structure: SIR2004 (Burla et al., 2005 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810004605/jh2130sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810004605/jh2130Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Ni(C4H6NO3)2(H2O)2]F(000) = 340
Mr = 326.94Dx = 1.707 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 3254 reflections
a = 9.6071 (9) Åθ = 3.6–27.5°
b = 7.1721 (7) ŵ = 1.56 mm1
c = 9.6805 (9) ÅT = 120 K
β = 107.557 (5)°Block, lilac
V = 635.94 (10) Å30.23 × 0.15 × 0.11 mm
Z = 2
Nonius KappaCCD diffractometer1626 independent reflections
Radiation source: fine-focus sealed tube1286 reflections with I > 2σ(I)
horizontally mounted graphite crystalRint = 0.032
Detector resolution: 9 pixels mm-1θmax = 36.4°, θmin = 3.6°
φ scans and ω scans with κ offseth = −16→16
Absorption correction: multi-scan (SADABS, Sheldrick, 2001)k = −11→11
Tmin = 0.622, Tmax = 0.796l = −16→16
4576 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.025Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.060H atoms treated by a mixture of independent and constrained refinement
S = 1.05w = 1/[σ2(Fo2) + (0.0307P)2] where P = (Fo2 + 2Fc2)/3
1626 reflections(Δ/σ)max < 0.001
101 parametersΔρmax = 0.35 e Å3
0 restraintsΔρmin = −0.32 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Ni10.00000.00000.00000.00914 (9)
O1−0.07925 (12)0.23226 (15)−0.10969 (11)0.0129 (2)
O2−0.16372 (12)0.51946 (16)−0.14813 (12)0.0144 (3)
O30.00013 (14)−0.01018 (19)0.30386 (13)0.0163 (3)
O4−0.20766 (13)−0.12137 (18)−0.07790 (13)0.0129 (3)
N1−0.05011 (15)0.09879 (19)0.17719 (13)0.0114 (3)
C1−0.13309 (17)0.3773 (2)−0.07010 (16)0.0110 (3)
C2−0.1685 (2)0.3862 (2)0.07312 (17)0.0150 (3)
H2A−0.14480.51160.11020.018*
H2B−0.27360.37370.04950.018*
C3−0.10320 (18)0.2559 (2)0.19819 (17)0.0122 (3)
C4−0.1086 (2)0.3230 (3)0.34280 (18)0.0226 (4)
H4A−0.08240.22290.41160.034*
H4B−0.20560.36490.33500.034*
H4C−0.04120.42430.37460.034*
H1O30.038 (3)−0.085 (3)0.281 (2)0.026 (7)*
H1O4−0.253 (3)−0.063 (3)−0.158 (3)0.036 (6)*
H2O4−0.201 (2)−0.227 (3)−0.099 (2)0.028 (6)*
U11U22U33U12U13U23
Ni10.01179 (16)0.00714 (14)0.00827 (13)0.00080 (13)0.00266 (10)−0.00010 (12)
O10.0177 (7)0.0086 (6)0.0119 (5)0.0016 (5)0.0037 (5)0.0000 (4)
O20.0171 (6)0.0095 (6)0.0139 (5)0.0014 (5)0.0004 (5)0.0008 (4)
O30.0226 (7)0.0163 (6)0.0109 (5)0.0079 (6)0.0066 (5)0.0046 (5)
O40.0156 (7)0.0096 (6)0.0126 (6)0.0009 (5)0.0029 (5)−0.0003 (5)
N10.0119 (7)0.0131 (7)0.0085 (6)0.0000 (6)0.0021 (5)0.0022 (5)
C10.0082 (8)0.0095 (8)0.0120 (7)−0.0021 (6)−0.0021 (6)−0.0014 (6)
C20.0173 (9)0.0119 (8)0.0167 (8)0.0029 (7)0.0064 (7)−0.0011 (6)
C30.0104 (8)0.0138 (8)0.0130 (7)−0.0012 (7)0.0042 (6)−0.0016 (6)
C40.0324 (12)0.0199 (10)0.0177 (9)0.0072 (8)0.0110 (8)−0.0031 (7)
Ni1—O1i1.9986 (10)O4—H2O40.79 (2)
Ni1—O11.9986 (10)N1—C31.278 (2)
Ni1—N12.0431 (13)C1—C21.525 (2)
Ni1—N1i2.0431 (13)C2—C31.508 (2)
Ni1—O4i2.0973 (12)C2—H2A0.9700
Ni1—O42.0973 (12)C2—H2B0.9700
O1—C11.2714 (18)C3—C41.496 (2)
O2—C11.2499 (19)C4—H4A0.9600
O3—N11.4108 (17)C4—H4B0.9600
O3—H1O30.72 (2)C4—H4C0.9600
O4—H1O40.87 (3)
O1i—Ni1—O1180.00 (7)C3—N1—Ni1130.22 (11)
O1i—Ni1—N189.51 (5)O3—N1—Ni1115.60 (10)
O1—Ni1—N190.49 (5)O2—C1—O1121.88 (14)
O1i—Ni1—N1i90.49 (5)O2—C1—C2116.05 (14)
O1—Ni1—N1i89.51 (5)O1—C1—C2122.04 (14)
N1—Ni1—N1i180.00 (7)C3—C2—C1123.47 (14)
O1i—Ni1—O4i89.21 (5)C3—C2—H2A106.5
O1—Ni1—O4i90.79 (5)C1—C2—H2A106.5
N1—Ni1—O4i89.63 (5)C3—C2—H2B106.5
N1i—Ni1—O4i90.37 (5)C1—C2—H2B106.5
O1i—Ni1—O490.79 (5)H2A—C2—H2B106.5
O1—Ni1—O489.21 (5)N1—C3—C4124.10 (15)
N1—Ni1—O490.37 (5)N1—C3—C2120.51 (14)
N1i—Ni1—O489.63 (5)C4—C3—C2115.38 (14)
O4i—Ni1—O4180.00 (4)C3—C4—H4A109.5
C1—O1—Ni1130.26 (10)C3—C4—H4B109.5
N1—O3—H1O3102.5 (18)H4A—C4—H4B109.5
Ni1—O4—H1O4106.8 (16)C3—C4—H4C109.5
Ni1—O4—H2O4110.0 (15)H4A—C4—H4C109.5
H1O4—O4—H2O4107 (2)H4B—C4—H4C109.5
C3—N1—O3113.48 (13)
N1i—Ni1—O1—C1−178.29 (14)Ni1—O1—C1—O2172.23 (11)
O4i—Ni1—O1—C1−87.93 (13)Ni1—O1—C1—C2−9.7 (2)
O4—Ni1—O1—C192.07 (13)O2—C1—C2—C3−162.17 (15)
O1i—Ni1—N1—C3176.44 (15)O1—C1—C2—C319.6 (2)
O1—Ni1—N1—C3−3.56 (15)O3—N1—C3—C41.8 (2)
O4i—Ni1—N1—C387.23 (15)Ni1—N1—C3—C4−168.07 (13)
O4—Ni1—N1—C3−92.77 (15)O3—N1—C3—C2−177.11 (14)
O1i—Ni1—N1—O36.79 (10)Ni1—N1—C3—C213.1 (2)
O1—Ni1—N1—O3−173.21 (10)C1—C2—C3—N1−21.1 (2)
O4i—Ni1—N1—O3−82.43 (10)C1—C2—C3—C4159.90 (16)
O4—Ni1—N1—O397.57 (10)
D—H···AD—HH···AD···AD—H···A
O4—H2O4···O2ii0.79 (2)1.94 (2)2.7293 (17)175 (2)
O3—H1O3···O1i0.72 (2)2.10 (2)2.7404 (17)148 (2)
O4—H1O4···O2iii0.87 (3)1.90 (3)2.7576 (16)167 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O4—H2O4⋯O2i0.79 (2)1.94 (2)2.7293 (17)175 (2)
O3—H1O3⋯O1ii0.72 (2)2.10 (2)2.7404 (17)148 (2)
O4—H1O4⋯O2iii0.87 (3)1.90 (3)2.7576 (16)167 (2)

Symmetry codes: (i) ; (ii) ; (iii) .

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