Literature DB >> 21580150

5-Methyl-N'-(3-nitrobenzylidene)isoxazole-4-carbohydrazide.

Yan-Xian Jin1.   

Abstract

The mol-ecule of the title compound, C(12)H(10)N(4)O(4), displays an E configuration about the C=N bond. The dihedral angle between the benzene and isoxazole rings is 1.36 (5)° and the mol-ecular conformation is stabilized by the an intra-molecular C-H⋯N hydrogen bond. In the crystal structure, centrosymmetrically related mol-ecules are connected by pairs of N-H⋯O hydrogen bonds into dimers, which are further linked into a three-dimensional network by inter-molecular C-H⋯O hydrogen bonds and by π⋯π stacking inter-actions involving adjacent benzene and isoxazole rings, with a centroid-centroid separation of 3.861 (3) Å.

Entities:  

Year:  2009        PMID: 21580150      PMCID: PMC2980216          DOI: 10.1107/S1600536809051733

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity and coordination ability of hydrazone compounds, see: Khattab (2005 ▶); Reiter et al. (1985 ▶). For the properties of isoxazole derivatives, see: Stevens & Albizati (1984 ▶). For examples of crystal structures of hydrazone compounds, see: Fun et al. (2008 ▶); Wei et al. (2009 ▶); Khaledi et al. (2008 ▶). For reference bond-length data, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C12H10N4O4 M = 274.24 Monoclinic, a = 4.8668 (8) Å b = 25.202 (4) Å c = 10.257 (2) Å β = 100.721 (12)° V = 1236.1 (4) Å3 Z = 4 Mo Kα radiation μ = 0.11 mm−1 T = 293 K 0.66 × 0.30 × 0.14 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2004 ▶) T min = 0.951, T max = 0.971 10436 measured reflections 2828 independent reflections 1943 reflections with I > 2σ(I) R int = 0.034

Refinement

R[F 2 > 2σ(F 2)] = 0.049 wR(F 2) = 0.129 S = 1.10 2828 reflections 186 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.32 e Å−3 Δρmin = −0.24 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks General, I. DOI: 10.1107/S1600536809051733/rz2400sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809051733/rz2400Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H10N4O4F(000) = 568
Mr = 274.24Dx = 1.474 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 2571 reflections
a = 4.8668 (8) Åθ = 2.6–23.7°
b = 25.202 (4) ŵ = 0.11 mm1
c = 10.257 (2) ÅT = 293 K
β = 100.721 (12)°Block, colourless
V = 1236.1 (4) Å30.66 × 0.30 × 0.14 mm
Z = 4
Bruker APEXII CCD area-detector diffractometer2828 independent reflections
Radiation source: sealed tube1943 reflections with I > 2σ(I)
graphiteRint = 0.034
phi and ω scansθmax = 27.6°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Bruker, 2004)h = −5→6
Tmin = 0.951, Tmax = 0.971k = −32→30
10436 measured reflectionsl = −13→12
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.049Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.129H atoms treated by a mixture of independent and constrained refinement
S = 1.10w = 1/[σ2(Fo2) + (0.054P)2 + 0.2908P] where P = (Fo2 + 2Fc2)/3
2828 reflections(Δ/σ)max = 0.012
186 parametersΔρmax = 0.32 e Å3
1 restraintΔρmin = −0.24 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C1−0.2323 (5)0.37462 (8)0.4047 (2)0.0542 (5)
H1A−0.41170.36720.42670.081*
H1B−0.10730.38710.48230.081*
H1C−0.15810.34290.37290.081*
C2−0.2629 (4)0.41576 (7)0.30054 (17)0.0410 (4)
C3−0.2693 (4)0.47950 (7)0.15576 (17)0.0457 (5)
H3A−0.21790.50970.11420.055*
C4−0.1173 (4)0.45970 (7)0.27849 (16)0.0378 (4)
C50.1366 (4)0.47775 (7)0.36822 (16)0.0367 (4)
C60.3416 (4)0.59572 (7)0.23565 (16)0.0415 (5)
H60.49940.59970.30170.050*
C70.2862 (4)0.63497 (7)0.12970 (16)0.0377 (4)
C80.0622 (4)0.63082 (7)0.02243 (17)0.0438 (5)
H8−0.06270.60270.01880.053*
C90.0253 (4)0.66798 (8)−0.07759 (18)0.0500 (5)
H9−0.12370.6646−0.14850.060*
C100.2072 (4)0.71022 (7)−0.07375 (17)0.0471 (5)
H100.18320.7354−0.14120.057*
C110.4254 (4)0.71402 (7)0.03287 (16)0.0405 (4)
C120.4682 (4)0.67752 (7)0.13459 (16)0.0404 (4)
H120.61680.68140.20540.049*
H20.426 (3)0.5310 (8)0.4040 (16)0.053 (6)*
N1−0.4859 (4)0.45108 (7)0.10830 (15)0.0544 (5)
N20.2682 (3)0.52281 (6)0.34603 (13)0.0406 (4)
N30.1809 (3)0.55618 (6)0.24086 (13)0.0395 (4)
N40.6224 (4)0.75843 (6)0.03927 (15)0.0503 (4)
O1−0.4845 (3)0.40961 (5)0.20178 (13)0.0512 (4)
O20.2363 (3)0.45160 (5)0.46820 (11)0.0462 (4)
O30.7959 (4)0.76447 (7)0.14015 (15)0.0811 (6)
O40.6048 (4)0.78753 (6)−0.05611 (14)0.0689 (5)
U11U22U33U12U13U23
C10.0540 (14)0.0443 (11)0.0618 (12)−0.0070 (9)0.0046 (10)0.0082 (9)
C20.0369 (11)0.0402 (9)0.0438 (9)0.0012 (8)0.0017 (8)−0.0035 (7)
C30.0446 (12)0.0445 (10)0.0426 (9)−0.0046 (8)−0.0061 (8)0.0023 (8)
C40.0351 (10)0.0382 (9)0.0377 (8)0.0008 (7)0.0009 (7)−0.0005 (7)
C50.0345 (10)0.0374 (9)0.0361 (8)0.0010 (7)0.0013 (7)0.0012 (7)
C60.0413 (12)0.0424 (10)0.0378 (8)−0.0047 (8)−0.0006 (8)0.0023 (7)
C70.0405 (11)0.0370 (9)0.0351 (8)0.0000 (7)0.0058 (7)−0.0003 (7)
C80.0433 (12)0.0427 (10)0.0431 (9)−0.0045 (8)0.0018 (8)−0.0004 (7)
C90.0503 (13)0.0523 (11)0.0417 (9)−0.0012 (9)−0.0061 (9)0.0032 (8)
C100.0554 (14)0.0451 (10)0.0389 (9)0.0026 (9)0.0037 (9)0.0055 (8)
C110.0492 (12)0.0344 (9)0.0380 (8)−0.0025 (8)0.0087 (8)−0.0026 (7)
C120.0452 (11)0.0407 (9)0.0335 (8)−0.0032 (8)0.0023 (8)−0.0013 (7)
N10.0526 (11)0.0535 (10)0.0494 (9)−0.0058 (8)−0.0108 (8)0.0045 (7)
N20.0383 (9)0.0419 (8)0.0369 (7)−0.0062 (7)−0.0052 (7)0.0070 (6)
N30.0408 (9)0.0392 (8)0.0361 (7)−0.0012 (7)0.0005 (6)0.0045 (6)
N40.0657 (13)0.0404 (9)0.0448 (8)−0.0076 (8)0.0105 (8)−0.0011 (7)
O10.0437 (9)0.0487 (7)0.0558 (8)−0.0099 (6)−0.0047 (6)−0.0022 (6)
O20.0435 (8)0.0460 (7)0.0436 (6)−0.0060 (6)−0.0065 (6)0.0122 (5)
O30.1020 (15)0.0733 (11)0.0575 (9)−0.0453 (10)−0.0124 (9)0.0048 (8)
O40.0948 (14)0.0547 (9)0.0567 (8)−0.0164 (8)0.0131 (8)0.0157 (7)
C1—C21.476 (2)C7—C81.401 (2)
C1—H1A0.9600C8—C91.376 (3)
C1—H1B0.9600C8—H80.9300
C1—H1C0.9600C9—C101.381 (3)
C2—O11.344 (2)C9—H90.9300
C2—C41.356 (3)C10—C111.379 (3)
C3—N11.292 (2)C10—H100.9300
C3—C41.426 (2)C11—C121.377 (2)
C3—H3A0.9300C11—N41.468 (2)
C4—C51.469 (2)C12—H120.9300
C5—O21.2394 (19)N1—O11.417 (2)
C5—N21.344 (2)N2—N31.3714 (19)
C6—N31.274 (2)N2—H20.901 (10)
C6—C71.457 (2)N4—O41.213 (2)
C6—H60.9300N4—O31.217 (2)
C7—C121.386 (2)
C2—C1—H1A109.5C9—C8—C7120.61 (18)
C2—C1—H1B109.5C9—C8—H8119.7
H1A—C1—H1B109.5C7—C8—H8119.7
C2—C1—H1C109.5C8—C9—C10120.63 (17)
H1A—C1—H1C109.5C8—C9—H9119.7
H1B—C1—H1C109.5C10—C9—H9119.7
O1—C2—C4109.83 (15)C11—C10—C9118.12 (16)
O1—C2—C1115.04 (16)C11—C10—H10120.9
C4—C2—C1135.13 (16)C9—C10—H10120.9
N1—C3—C4113.03 (17)C12—C11—C10122.69 (17)
N1—C3—H3A123.5C12—C11—N4118.03 (16)
C4—C3—H3A123.5C10—C11—N4119.27 (15)
C2—C4—C3103.39 (15)C11—C12—C7118.94 (16)
C2—C4—C5123.58 (15)C11—C12—H12120.5
C3—C4—C5133.03 (16)C7—C12—H12120.5
O2—C5—N2117.65 (15)C3—N1—O1104.65 (14)
O2—C5—C4120.52 (16)C5—N2—N3124.32 (14)
N2—C5—C4121.83 (14)C5—N2—H2117.0 (13)
N3—C6—C7122.18 (16)N3—N2—H2118.7 (13)
N3—C6—H6118.9C6—N3—N2114.20 (14)
C7—C6—H6118.9O4—N4—O3122.94 (17)
C12—C7—C8119.00 (15)O4—N4—C11118.53 (16)
C12—C7—C6118.04 (15)O3—N4—C11118.53 (15)
C8—C7—C6122.94 (16)C2—O1—N1109.09 (14)
O1—C2—C4—C3−0.7 (2)C9—C10—C11—N4179.80 (18)
C1—C2—C4—C3179.0 (2)C10—C11—C12—C70.4 (3)
O1—C2—C4—C5179.85 (17)N4—C11—C12—C7−179.30 (17)
C1—C2—C4—C5−0.5 (4)C8—C7—C12—C11−0.9 (3)
N1—C3—C4—C20.5 (2)C6—C7—C12—C11177.65 (17)
N1—C3—C4—C5179.9 (2)C4—C3—N1—O1−0.1 (2)
C2—C4—C5—O22.7 (3)O2—C5—N2—N3−179.10 (16)
C3—C4—C5—O2−176.56 (19)C4—C5—N2—N30.6 (3)
C2—C4—C5—N2−176.99 (18)C7—C6—N3—N2178.84 (16)
C3—C4—C5—N23.7 (3)C5—N2—N3—C6−177.51 (18)
N3—C6—C7—C12178.03 (18)C12—C11—N4—O4172.21 (18)
N3—C6—C7—C8−3.5 (3)C10—C11—N4—O4−7.5 (3)
C12—C7—C8—C90.9 (3)C12—C11—N4—O3−7.9 (3)
C6—C7—C8—C9−177.58 (19)C10—C11—N4—O3172.4 (2)
C7—C8—C9—C10−0.4 (3)C4—C2—O1—N10.6 (2)
C8—C9—C10—C11−0.1 (3)C1—C2—O1—N1−179.08 (16)
C9—C10—C11—C120.1 (3)C3—N1—O1—C2−0.3 (2)
D—H···AD—HH···AD···AD—H···A
C3—H3A···N30.932.432.930 (2)114
C12—H12···O4i0.932.583.240 (2)128
N2—H2···O2ii0.90 (1)1.95 (1)2.855 (2)179 (1)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C3—H3A⋯N30.932.432.930 (2)114
C12—H12⋯O4i0.932.583.240 (2)128
N2—H2⋯O2ii0.90 (1)1.95 (1)2.855 (2)179 (1)

Symmetry codes: (i) ; (ii) .

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