| Literature DB >> 21580150 |
Abstract
The mol-ecule of the title compound, C(12)H(10)N(4)O(4), displays an E configuration about the C=N bond. The dihedral angle between the benzene and isoxazole rings is 1.36 (5)° and the mol-ecular conformation is stabilized by the an intra-molecular C-H⋯N hydrogen bond. In the crystal structure, centrosymmetrically related mol-ecules are connected by pairs of N-H⋯O hydrogen bonds into dimers, which are further linked into a three-dimensional network by inter-molecular C-H⋯O hydrogen bonds and by π⋯π stacking inter-actions involving adjacent benzene and isoxazole rings, with a centroid-centroid separation of 3.861 (3) Å.Entities:
Year: 2009 PMID: 21580150 PMCID: PMC2980216 DOI: 10.1107/S1600536809051733
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C12H10N4O4 | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 2571 reflections |
| θ = 2.6–23.7° | |
| µ = 0.11 mm−1 | |
| β = 100.721 (12)° | Block, colourless |
| 0.66 × 0.30 × 0.14 mm | |
| Bruker APEXII CCD area-detector diffractometer | 2828 independent reflections |
| Radiation source: sealed tube | 1943 reflections with |
| graphite | |
| phi and ω scans | θmax = 27.6°, θmin = 2.2° |
| Absorption correction: multi-scan ( | |
| 10436 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 2828 reflections | (Δ/σ)max = 0.012 |
| 186 parameters | Δρmax = 0.32 e Å−3 |
| 1 restraint | Δρmin = −0.24 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| C1 | −0.2323 (5) | 0.37462 (8) | 0.4047 (2) | 0.0542 (5) | |
| H1A | −0.4117 | 0.3672 | 0.4267 | 0.081* | |
| H1B | −0.1073 | 0.3871 | 0.4823 | 0.081* | |
| H1C | −0.1581 | 0.3429 | 0.3729 | 0.081* | |
| C2 | −0.2629 (4) | 0.41576 (7) | 0.30054 (17) | 0.0410 (4) | |
| C3 | −0.2693 (4) | 0.47950 (7) | 0.15576 (17) | 0.0457 (5) | |
| H3A | −0.2179 | 0.5097 | 0.1142 | 0.055* | |
| C4 | −0.1173 (4) | 0.45970 (7) | 0.27849 (16) | 0.0378 (4) | |
| C5 | 0.1366 (4) | 0.47775 (7) | 0.36822 (16) | 0.0367 (4) | |
| C6 | 0.3416 (4) | 0.59572 (7) | 0.23565 (16) | 0.0415 (5) | |
| H6 | 0.4994 | 0.5997 | 0.3017 | 0.050* | |
| C7 | 0.2862 (4) | 0.63497 (7) | 0.12970 (16) | 0.0377 (4) | |
| C8 | 0.0622 (4) | 0.63082 (7) | 0.02243 (17) | 0.0438 (5) | |
| H8 | −0.0627 | 0.6027 | 0.0188 | 0.053* | |
| C9 | 0.0253 (4) | 0.66798 (8) | −0.07759 (18) | 0.0500 (5) | |
| H9 | −0.1237 | 0.6646 | −0.1485 | 0.060* | |
| C10 | 0.2072 (4) | 0.71022 (7) | −0.07375 (17) | 0.0471 (5) | |
| H10 | 0.1832 | 0.7354 | −0.1412 | 0.057* | |
| C11 | 0.4254 (4) | 0.71402 (7) | 0.03287 (16) | 0.0405 (4) | |
| C12 | 0.4682 (4) | 0.67752 (7) | 0.13459 (16) | 0.0404 (4) | |
| H12 | 0.6168 | 0.6814 | 0.2054 | 0.049* | |
| H2 | 0.426 (3) | 0.5310 (8) | 0.4040 (16) | 0.053 (6)* | |
| N1 | −0.4859 (4) | 0.45108 (7) | 0.10830 (15) | 0.0544 (5) | |
| N2 | 0.2682 (3) | 0.52281 (6) | 0.34603 (13) | 0.0406 (4) | |
| N3 | 0.1809 (3) | 0.55618 (6) | 0.24086 (13) | 0.0395 (4) | |
| N4 | 0.6224 (4) | 0.75843 (6) | 0.03927 (15) | 0.0503 (4) | |
| O1 | −0.4845 (3) | 0.40961 (5) | 0.20178 (13) | 0.0512 (4) | |
| O2 | 0.2363 (3) | 0.45160 (5) | 0.46820 (11) | 0.0462 (4) | |
| O3 | 0.7959 (4) | 0.76447 (7) | 0.14015 (15) | 0.0811 (6) | |
| O4 | 0.6048 (4) | 0.78753 (6) | −0.05611 (14) | 0.0689 (5) |
| C1 | 0.0540 (14) | 0.0443 (11) | 0.0618 (12) | −0.0070 (9) | 0.0046 (10) | 0.0082 (9) |
| C2 | 0.0369 (11) | 0.0402 (9) | 0.0438 (9) | 0.0012 (8) | 0.0017 (8) | −0.0035 (7) |
| C3 | 0.0446 (12) | 0.0445 (10) | 0.0426 (9) | −0.0046 (8) | −0.0061 (8) | 0.0023 (8) |
| C4 | 0.0351 (10) | 0.0382 (9) | 0.0377 (8) | 0.0008 (7) | 0.0009 (7) | −0.0005 (7) |
| C5 | 0.0345 (10) | 0.0374 (9) | 0.0361 (8) | 0.0010 (7) | 0.0013 (7) | 0.0012 (7) |
| C6 | 0.0413 (12) | 0.0424 (10) | 0.0378 (8) | −0.0047 (8) | −0.0006 (8) | 0.0023 (7) |
| C7 | 0.0405 (11) | 0.0370 (9) | 0.0351 (8) | 0.0000 (7) | 0.0058 (7) | −0.0003 (7) |
| C8 | 0.0433 (12) | 0.0427 (10) | 0.0431 (9) | −0.0045 (8) | 0.0018 (8) | −0.0004 (7) |
| C9 | 0.0503 (13) | 0.0523 (11) | 0.0417 (9) | −0.0012 (9) | −0.0061 (9) | 0.0032 (8) |
| C10 | 0.0554 (14) | 0.0451 (10) | 0.0389 (9) | 0.0026 (9) | 0.0037 (9) | 0.0055 (8) |
| C11 | 0.0492 (12) | 0.0344 (9) | 0.0380 (8) | −0.0025 (8) | 0.0087 (8) | −0.0026 (7) |
| C12 | 0.0452 (11) | 0.0407 (9) | 0.0335 (8) | −0.0032 (8) | 0.0023 (8) | −0.0013 (7) |
| N1 | 0.0526 (11) | 0.0535 (10) | 0.0494 (9) | −0.0058 (8) | −0.0108 (8) | 0.0045 (7) |
| N2 | 0.0383 (9) | 0.0419 (8) | 0.0369 (7) | −0.0062 (7) | −0.0052 (7) | 0.0070 (6) |
| N3 | 0.0408 (9) | 0.0392 (8) | 0.0361 (7) | −0.0012 (7) | 0.0005 (6) | 0.0045 (6) |
| N4 | 0.0657 (13) | 0.0404 (9) | 0.0448 (8) | −0.0076 (8) | 0.0105 (8) | −0.0011 (7) |
| O1 | 0.0437 (9) | 0.0487 (7) | 0.0558 (8) | −0.0099 (6) | −0.0047 (6) | −0.0022 (6) |
| O2 | 0.0435 (8) | 0.0460 (7) | 0.0436 (6) | −0.0060 (6) | −0.0065 (6) | 0.0122 (5) |
| O3 | 0.1020 (15) | 0.0733 (11) | 0.0575 (9) | −0.0453 (10) | −0.0124 (9) | 0.0048 (8) |
| O4 | 0.0948 (14) | 0.0547 (9) | 0.0567 (8) | −0.0164 (8) | 0.0131 (8) | 0.0157 (7) |
| C1—C2 | 1.476 (2) | C7—C8 | 1.401 (2) |
| C1—H1A | 0.9600 | C8—C9 | 1.376 (3) |
| C1—H1B | 0.9600 | C8—H8 | 0.9300 |
| C1—H1C | 0.9600 | C9—C10 | 1.381 (3) |
| C2—O1 | 1.344 (2) | C9—H9 | 0.9300 |
| C2—C4 | 1.356 (3) | C10—C11 | 1.379 (3) |
| C3—N1 | 1.292 (2) | C10—H10 | 0.9300 |
| C3—C4 | 1.426 (2) | C11—C12 | 1.377 (2) |
| C3—H3A | 0.9300 | C11—N4 | 1.468 (2) |
| C4—C5 | 1.469 (2) | C12—H12 | 0.9300 |
| C5—O2 | 1.2394 (19) | N1—O1 | 1.417 (2) |
| C5—N2 | 1.344 (2) | N2—N3 | 1.3714 (19) |
| C6—N3 | 1.274 (2) | N2—H2 | 0.901 (10) |
| C6—C7 | 1.457 (2) | N4—O4 | 1.213 (2) |
| C6—H6 | 0.9300 | N4—O3 | 1.217 (2) |
| C7—C12 | 1.386 (2) | ||
| C2—C1—H1A | 109.5 | C9—C8—C7 | 120.61 (18) |
| C2—C1—H1B | 109.5 | C9—C8—H8 | 119.7 |
| H1A—C1—H1B | 109.5 | C7—C8—H8 | 119.7 |
| C2—C1—H1C | 109.5 | C8—C9—C10 | 120.63 (17) |
| H1A—C1—H1C | 109.5 | C8—C9—H9 | 119.7 |
| H1B—C1—H1C | 109.5 | C10—C9—H9 | 119.7 |
| O1—C2—C4 | 109.83 (15) | C11—C10—C9 | 118.12 (16) |
| O1—C2—C1 | 115.04 (16) | C11—C10—H10 | 120.9 |
| C4—C2—C1 | 135.13 (16) | C9—C10—H10 | 120.9 |
| N1—C3—C4 | 113.03 (17) | C12—C11—C10 | 122.69 (17) |
| N1—C3—H3A | 123.5 | C12—C11—N4 | 118.03 (16) |
| C4—C3—H3A | 123.5 | C10—C11—N4 | 119.27 (15) |
| C2—C4—C3 | 103.39 (15) | C11—C12—C7 | 118.94 (16) |
| C2—C4—C5 | 123.58 (15) | C11—C12—H12 | 120.5 |
| C3—C4—C5 | 133.03 (16) | C7—C12—H12 | 120.5 |
| O2—C5—N2 | 117.65 (15) | C3—N1—O1 | 104.65 (14) |
| O2—C5—C4 | 120.52 (16) | C5—N2—N3 | 124.32 (14) |
| N2—C5—C4 | 121.83 (14) | C5—N2—H2 | 117.0 (13) |
| N3—C6—C7 | 122.18 (16) | N3—N2—H2 | 118.7 (13) |
| N3—C6—H6 | 118.9 | C6—N3—N2 | 114.20 (14) |
| C7—C6—H6 | 118.9 | O4—N4—O3 | 122.94 (17) |
| C12—C7—C8 | 119.00 (15) | O4—N4—C11 | 118.53 (16) |
| C12—C7—C6 | 118.04 (15) | O3—N4—C11 | 118.53 (15) |
| C8—C7—C6 | 122.94 (16) | C2—O1—N1 | 109.09 (14) |
| O1—C2—C4—C3 | −0.7 (2) | C9—C10—C11—N4 | 179.80 (18) |
| C1—C2—C4—C3 | 179.0 (2) | C10—C11—C12—C7 | 0.4 (3) |
| O1—C2—C4—C5 | 179.85 (17) | N4—C11—C12—C7 | −179.30 (17) |
| C1—C2—C4—C5 | −0.5 (4) | C8—C7—C12—C11 | −0.9 (3) |
| N1—C3—C4—C2 | 0.5 (2) | C6—C7—C12—C11 | 177.65 (17) |
| N1—C3—C4—C5 | 179.9 (2) | C4—C3—N1—O1 | −0.1 (2) |
| C2—C4—C5—O2 | 2.7 (3) | O2—C5—N2—N3 | −179.10 (16) |
| C3—C4—C5—O2 | −176.56 (19) | C4—C5—N2—N3 | 0.6 (3) |
| C2—C4—C5—N2 | −176.99 (18) | C7—C6—N3—N2 | 178.84 (16) |
| C3—C4—C5—N2 | 3.7 (3) | C5—N2—N3—C6 | −177.51 (18) |
| N3—C6—C7—C12 | 178.03 (18) | C12—C11—N4—O4 | 172.21 (18) |
| N3—C6—C7—C8 | −3.5 (3) | C10—C11—N4—O4 | −7.5 (3) |
| C12—C7—C8—C9 | 0.9 (3) | C12—C11—N4—O3 | −7.9 (3) |
| C6—C7—C8—C9 | −177.58 (19) | C10—C11—N4—O3 | 172.4 (2) |
| C7—C8—C9—C10 | −0.4 (3) | C4—C2—O1—N1 | 0.6 (2) |
| C8—C9—C10—C11 | −0.1 (3) | C1—C2—O1—N1 | −179.08 (16) |
| C9—C10—C11—C12 | 0.1 (3) | C3—N1—O1—C2 | −0.3 (2) |
| H··· | ||||
| C3—H3A···N3 | 0.93 | 2.43 | 2.930 (2) | 114 |
| C12—H12···O4i | 0.93 | 2.58 | 3.240 (2) | 128 |
| N2—H2···O2ii | 0.90 (1) | 1.95 (1) | 2.855 (2) | 179 (1) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| C3—H3 | 0.93 | 2.43 | 2.930 (2) | 114 |
| C12—H12⋯O4i | 0.93 | 2.58 | 3.240 (2) | 128 |
| N2—H2⋯O2ii | 0.90 (1) | 1.95 (1) | 2.855 (2) | 179 (1) |
Symmetry codes: (i) ; (ii) .