| Literature DB >> 21580135 |
Hoong-Kun Fun, Ching Kheng Quah, Annada C Maity, Nirmal Kumar Das, Shyamaprosad Goswami.
Abstract
In the title compound, C(9)H(5)N(3), the quinoxaline ring is essentially planar, with a maximum deviation of 0.012 (1) Å. Short inter-molecular distances between the centroids of the 2,3-dihydro-pyrazine and benzene rings [3.6490 (5) Å] indicate the existence of π⋯π inter-actions. In the crystal packing, the mol-ecules are linked via two pairs of inter-molecular C-H⋯N inter-actions, forming R(2) (2) (8) and R(2) (2) (10) ring motifs; these mol-ecules are further linked into a two-dimensional network parallel to (1 0 2) via another C-H⋯N inter-action.Entities:
Year: 2009 PMID: 21580135 PMCID: PMC2980041 DOI: 10.1107/S1600536809051289
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C9H5N3 | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 4710 reflections |
| θ = 2.9–32.7° | |
| µ = 0.09 mm−1 | |
| β = 93.466 (1)° | Block, yellow |
| 0.39 × 0.28 × 0.25 mm | |
| Bruker SMART APEXII CCD area-detector diffractometer | 2716 independent reflections |
| Radiation source: fine-focus sealed tube | 2183 reflections with |
| graphite | |
| φ and ω scans | θmax = 32.8°, θmin = 2.1° |
| Absorption correction: multi-scan ( | |
| 11604 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| All H-atom parameters refined | |
| 2716 reflections | (Δ/σ)max = 0.001 |
| 129 parameters | Δρmax = 0.53 e Å−3 |
| 0 restraints | Δρmin = −0.23 e Å−3 |
| Experimental. The crystal was placed in the cold stream of an Oxford Cyrosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K. |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| N1 | 0.12156 (18) | 0.46098 (4) | 0.84114 (7) | 0.01481 (16) | |
| N2 | −0.12366 (19) | 0.33470 (4) | 0.71846 (8) | 0.01659 (17) | |
| N3 | −0.2187 (2) | 0.57757 (5) | 0.60971 (9) | 0.0269 (2) | |
| C1 | 0.1884 (2) | 0.39728 (4) | 0.89844 (8) | 0.01344 (17) | |
| C2 | 0.3822 (2) | 0.39456 (5) | 1.02181 (9) | 0.01744 (18) | |
| C3 | 0.4514 (2) | 0.33059 (5) | 1.07937 (10) | 0.02033 (19) | |
| C4 | 0.3352 (2) | 0.26756 (5) | 1.01678 (10) | 0.0210 (2) | |
| C5 | 0.1474 (2) | 0.26871 (5) | 0.89805 (9) | 0.01857 (19) | |
| C6 | 0.0674 (2) | 0.33382 (4) | 0.83638 (9) | 0.01441 (17) | |
| C7 | −0.1868 (2) | 0.39663 (4) | 0.66474 (9) | 0.01675 (18) | |
| C8 | −0.0633 (2) | 0.45941 (4) | 0.72702 (8) | 0.01496 (17) | |
| C9 | −0.1450 (2) | 0.52598 (5) | 0.66332 (9) | 0.01913 (19) | |
| H2 | 0.471 (4) | 0.4375 (7) | 1.0662 (14) | 0.030 (3)* | |
| H3 | 0.591 (4) | 0.3282 (7) | 1.1650 (16) | 0.038 (4)* | |
| H4 | 0.396 (3) | 0.2229 (7) | 1.0622 (13) | 0.028 (3)* | |
| H5 | 0.057 (4) | 0.2262 (7) | 0.8533 (14) | 0.032 (3)* | |
| H7 | −0.328 (4) | 0.4008 (7) | 0.5793 (14) | 0.028 (3)* |
| N1 | 0.0154 (3) | 0.0145 (3) | 0.0146 (3) | 0.0003 (2) | 0.0014 (2) | 0.0010 (2) |
| N2 | 0.0168 (3) | 0.0173 (3) | 0.0157 (4) | −0.0006 (2) | 0.0014 (3) | −0.0016 (3) |
| N3 | 0.0328 (4) | 0.0235 (4) | 0.0241 (5) | 0.0028 (3) | −0.0002 (3) | 0.0057 (3) |
| C1 | 0.0128 (3) | 0.0147 (3) | 0.0130 (4) | 0.0002 (2) | 0.0019 (3) | 0.0004 (3) |
| C2 | 0.0157 (4) | 0.0218 (4) | 0.0147 (4) | −0.0004 (3) | −0.0002 (3) | 0.0005 (3) |
| C3 | 0.0164 (4) | 0.0275 (4) | 0.0170 (4) | 0.0019 (3) | 0.0003 (3) | 0.0055 (3) |
| C4 | 0.0176 (4) | 0.0208 (4) | 0.0248 (5) | 0.0030 (3) | 0.0042 (3) | 0.0088 (3) |
| C5 | 0.0179 (4) | 0.0147 (4) | 0.0235 (5) | 0.0007 (3) | 0.0036 (3) | 0.0029 (3) |
| C6 | 0.0131 (3) | 0.0152 (3) | 0.0151 (4) | 0.0000 (2) | 0.0027 (3) | 0.0000 (3) |
| C7 | 0.0164 (4) | 0.0195 (4) | 0.0142 (4) | −0.0003 (3) | 0.0000 (3) | −0.0004 (3) |
| C8 | 0.0145 (3) | 0.0168 (4) | 0.0137 (4) | 0.0005 (3) | 0.0019 (3) | 0.0015 (3) |
| C9 | 0.0204 (4) | 0.0202 (4) | 0.0167 (4) | 0.0005 (3) | 0.0005 (3) | 0.0015 (3) |
| N1—C8 | 1.3220 (11) | C3—C4 | 1.4175 (14) |
| N1—C1 | 1.3636 (10) | C3—H3 | 0.995 (16) |
| N2—C7 | 1.3161 (11) | C4—C5 | 1.3670 (13) |
| N2—C6 | 1.3659 (11) | C4—H4 | 0.988 (13) |
| N3—C9 | 1.1506 (12) | C5—C6 | 1.4150 (11) |
| C1—C2 | 1.4190 (12) | C5—H5 | 0.980 (14) |
| C1—C6 | 1.4273 (11) | C7—C8 | 1.4202 (12) |
| C2—C3 | 1.3706 (12) | C7—H7 | 0.997 (14) |
| C2—H2 | 0.985 (14) | C8—C9 | 1.4495 (12) |
| C8—N1—C1 | 115.57 (7) | C4—C5—C6 | 119.57 (8) |
| C7—N2—C6 | 116.78 (7) | C4—C5—H5 | 123.2 (8) |
| N1—C1—C2 | 119.01 (7) | C6—C5—H5 | 117.2 (8) |
| N1—C1—C6 | 121.14 (8) | N2—C6—C5 | 119.33 (7) |
| C2—C1—C6 | 119.85 (7) | N2—C6—C1 | 121.28 (7) |
| C3—C2—C1 | 119.16 (8) | C5—C6—C1 | 119.38 (8) |
| C3—C2—H2 | 119.4 (8) | N2—C7—C8 | 121.44 (8) |
| C1—C2—H2 | 121.5 (8) | N2—C7—H7 | 120.7 (7) |
| C2—C3—C4 | 120.92 (9) | C8—C7—H7 | 117.9 (7) |
| C2—C3—H3 | 119.6 (8) | N1—C8—C7 | 123.77 (7) |
| C4—C3—H3 | 119.4 (8) | N1—C8—C9 | 117.52 (7) |
| C5—C4—C3 | 121.10 (8) | C7—C8—C9 | 118.71 (8) |
| C5—C4—H4 | 121.5 (8) | N3—C9—C8 | 177.49 (10) |
| C3—C4—H4 | 117.4 (8) | ||
| C8—N1—C1—C2 | −179.34 (7) | C4—C5—C6—C1 | 0.84 (13) |
| C8—N1—C1—C6 | 0.75 (12) | N1—C1—C6—N2 | −0.95 (13) |
| N1—C1—C2—C3 | −179.68 (8) | C2—C1—C6—N2 | 179.14 (7) |
| C6—C1—C2—C3 | 0.24 (13) | N1—C1—C6—C5 | 178.94 (7) |
| C1—C2—C3—C4 | 0.62 (13) | C2—C1—C6—C5 | −0.97 (12) |
| C2—C3—C4—C5 | −0.75 (14) | C6—N2—C7—C8 | −0.32 (13) |
| C3—C4—C5—C6 | 0.00 (14) | C1—N1—C8—C7 | −0.38 (12) |
| C7—N2—C6—C5 | −179.20 (7) | C1—N1—C8—C9 | 179.15 (7) |
| C7—N2—C6—C1 | 0.69 (12) | N2—C7—C8—N1 | 0.18 (14) |
| C4—C5—C6—N2 | −179.26 (7) | N2—C7—C8—C9 | −179.36 (8) |
| H··· | ||||
| C2—H2···N1i | 0.984 (14) | 2.619 (14) | 3.5730 (12) | 163.4 (12) |
| C4—H4···N2ii | 0.988 (13) | 2.593 (13) | 3.4268 (12) | 142.0 (10) |
| C7—H7···N3iii | 0.998 (14) | 2.540 (15) | 3.5225 (12) | 168.3 (12) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| C2—H2⋯N1i | 0.984 (14) | 2.619 (14) | 3.5730 (12) | 163.4 (12) |
| C4—H4⋯N2ii | 0.988 (13) | 2.593 (13) | 3.4268 (12) | 142.0 (10) |
| C7—H7⋯N3iii | 0.998 (14) | 2.540 (15) | 3.5225 (12) | 168.3 (12) |
Symmetry codes: (i) ; (ii) ; (iii) .