Literature DB >> 21580131

7-Chloro-indoline-2,3-dione.

Jie Sun, Zai-Sheng Cai.   

Abstract

There are two mol-ecules in the asymmetric unit of the title compound, C(8)H(4)ClNO(2). In the crystal, they are linked by N-H⋯O hydrogen bonds, generating centrosymmetric, tetra-meric assemblies. A C-H⋯O inter-action also occurs.

Entities:  

Year:  2009        PMID: 21580131      PMCID: PMC2980139          DOI: 10.1107/S1600536809051526

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to oxyphenastatin derivatives and further synthetic details, see: Uddin et al. (2007 ▶). For bond-length data, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C8H4ClNO2 M = 181.57 Triclinic, a = 7.2450 (14) Å b = 8.6080 (17) Å c = 12.470 (3) Å α = 86.95 (3)° β = 78.02 (3)° γ = 84.89 (3)° V = 757.2 (3) Å3 Z = 4 Mo Kα radiation μ = 0.45 mm−1 T = 293 K 0.30 × 0.20 × 0.10 mm

Data collection

Enraf–Nonius CAD-4 diffractometer Absorption correction: ψ scan (North et al., 1968 ▶) T min = 0.876, T max = 0.956 2988 measured reflections 2749 independent reflections 2051 reflections with I > 2σ(I) R int = 0.047 3 standard reflections every 200 reflections intensity decay: 1%

Refinement

R[F 2 > 2σ(F 2)] = 0.055 wR(F 2) = 0.160 S = 1.01 2749 reflections 217 parameters 13 restraints H-atom parameters constrained Δρmax = 0.63 e Å−3 Δρmin = −0.29 e Å−3 Data collection: CAD-4 Software (Enraf–Nonius, 1989 ▶); cell refinement: CAD-4 Software; data reduction: XCAD4 (Harms & Wocadlo,1995 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809051526/hb5233sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809051526/hb5233Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C8H4ClNO2Z = 4
Mr = 181.57F(000) = 368
Triclinic, P1Dx = 1.593 Mg m3
Hall symbol: -P 1Melting point: 463K K
a = 7.2450 (14) ÅMo Kα radiation, λ = 0.71073 Å
b = 8.6080 (17) ÅCell parameters from 25 reflections
c = 12.470 (3) Åθ = 9–13°
α = 86.95 (3)°µ = 0.45 mm1
β = 78.02 (3)°T = 293 K
γ = 84.89 (3)°Block, yellow
V = 757.2 (3) Å30.30 × 0.20 × 0.10 mm
Enraf–Nonius CAD-4 diffractometer2051 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.047
graphiteθmax = 25.3°, θmin = 1.7°
ω/2θ scansh = 0→8
Absorption correction: ψ scan (North et al., 1968)k = −10→10
Tmin = 0.876, Tmax = 0.956l = −14→14
2988 measured reflections3 standard reflections every 200 reflections
2749 independent reflections intensity decay: 1%
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.055Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.160H-atom parameters constrained
S = 1.01w = 1/[σ2(Fo2) + (0.1P)2 + 0.250P] where P = (Fo2 + 2Fc2)/3
2749 reflections(Δ/σ)max < 0.001
217 parametersΔρmax = 0.63 e Å3
13 restraintsΔρmin = −0.29 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.28644 (18)0.90528 (12)0.43418 (10)0.0839 (4)
N10.4403 (4)0.6203 (3)0.28727 (19)0.0415 (6)
H1A0.45990.70990.25500.050*
O10.4519 (4)0.2163 (3)0.3096 (2)0.0731 (8)
O20.5909 (4)0.4581 (3)0.1488 (2)0.0662 (7)
C10.1629 (6)0.4991 (7)0.6003 (3)0.0780 (13)
H1B0.10190.46740.67020.094*
C20.1735 (5)0.6597 (6)0.5739 (3)0.0701 (11)
H2A0.12010.73280.62610.084*
C30.2638 (5)0.7090 (4)0.4697 (3)0.0541 (9)
C40.3423 (4)0.5985 (4)0.3954 (2)0.0393 (7)
C50.3300 (4)0.4400 (4)0.4231 (3)0.0462 (8)
C60.2399 (5)0.3892 (5)0.5258 (3)0.0636 (11)
H6A0.23210.28340.54350.076*
C70.4285 (5)0.3544 (4)0.3265 (3)0.0472 (8)
C80.5004 (4)0.4814 (4)0.2399 (3)0.0441 (7)
Cl20.12910 (13)0.66786 (10)0.12400 (7)0.0589 (3)
N20.3136 (3)0.9103 (3)−0.04844 (19)0.0353 (5)
H2B0.37370.88320.00310.042*
O30.2217 (4)1.0991 (3)−0.2813 (2)0.0618 (7)
O40.4995 (3)1.1009 (3)−0.13853 (18)0.0533 (6)
C9−0.1833 (5)0.7602 (4)−0.1086 (3)0.0486 (8)
H9A−0.29480.7290−0.12350.058*
C10−0.0841 (4)0.8681 (4)−0.1775 (3)0.0472 (8)
H10A−0.12820.9111−0.23840.057*
C110.0833 (4)0.9115 (3)−0.1544 (2)0.0403 (7)
C120.1483 (4)0.8492 (3)−0.0617 (2)0.0352 (6)
C130.0469 (4)0.7416 (3)0.0075 (2)0.0414 (7)
C14−0.1181 (4)0.6972 (4)−0.0167 (3)0.0446 (7)
H14A−0.18660.62430.02900.053*
C150.3646 (4)1.0178 (4)−0.1286 (2)0.0438 (7)
C160.2210 (4)1.0242 (4)−0.2053 (3)0.0473 (8)
U11U22U33U12U13U23
Cl10.1048 (9)0.0609 (6)0.0837 (8)0.0087 (6)−0.0158 (6)−0.0213 (5)
N10.0483 (14)0.0400 (13)0.0346 (13)−0.0113 (11)−0.0040 (11)0.0076 (10)
O10.102 (2)0.0405 (14)0.083 (2)−0.0138 (13)−0.0326 (17)0.0086 (13)
O20.0718 (17)0.0661 (16)0.0523 (15)−0.0055 (13)0.0086 (13)−0.0098 (12)
C10.049 (2)0.144 (4)0.040 (2)−0.025 (2)−0.0059 (17)0.025 (2)
C20.050 (2)0.116 (3)0.0408 (19)0.003 (2)−0.0039 (16)−0.010 (2)
C30.0449 (18)0.073 (2)0.0444 (18)−0.0010 (16)−0.0110 (15)−0.0040 (16)
C40.0342 (15)0.0512 (17)0.0333 (15)−0.0076 (12)−0.0091 (12)0.0059 (13)
C50.0420 (16)0.0554 (19)0.0443 (17)−0.0175 (14)−0.0149 (14)0.0180 (14)
C60.054 (2)0.092 (3)0.049 (2)−0.029 (2)−0.0186 (18)0.033 (2)
C70.0547 (19)0.0435 (18)0.0501 (19)−0.0152 (14)−0.0237 (16)0.0084 (14)
C80.0424 (17)0.0451 (17)0.0440 (18)−0.0062 (13)−0.0062 (14)0.0011 (13)
Cl20.0661 (6)0.0547 (5)0.0548 (5)−0.0123 (4)−0.0093 (4)0.0095 (4)
N20.0392 (13)0.0354 (12)0.0323 (12)−0.0086 (10)−0.0088 (10)0.0054 (10)
O30.0607 (15)0.0807 (18)0.0447 (14)0.0069 (13)−0.0190 (12)0.0044 (13)
O40.0564 (14)0.0499 (13)0.0496 (13)−0.0119 (11)−0.0020 (11)0.0135 (10)
C90.0388 (16)0.0509 (18)0.057 (2)−0.0076 (14)−0.0067 (15)−0.0162 (16)
C100.0406 (17)0.0563 (19)0.0460 (18)0.0031 (15)−0.0118 (14)−0.0118 (15)
C110.0371 (15)0.0433 (16)0.0394 (16)−0.0018 (12)−0.0046 (13)−0.0074 (13)
C120.0326 (14)0.0329 (14)0.0371 (15)−0.0030 (11)0.0010 (12)−0.0052 (11)
C130.0405 (16)0.0378 (15)0.0429 (17)−0.0050 (12)0.0005 (13)−0.0080 (13)
C140.0376 (16)0.0398 (16)0.0521 (18)−0.0101 (12)0.0046 (14)−0.0058 (13)
C150.0442 (17)0.0437 (16)0.0406 (16)−0.0105 (14)−0.0012 (14)0.0070 (13)
C160.0441 (18)0.0392 (16)0.055 (2)−0.0014 (13)−0.0017 (15)−0.0040 (15)
Cl1—C31.737 (4)Cl2—C131.749 (3)
N1—C81.358 (4)N2—C151.342 (4)
N1—C41.399 (4)N2—C121.393 (4)
N1—H1A0.8600N2—H2B0.8600
O1—C71.210 (4)O3—C161.116 (4)
O2—C81.205 (4)O4—C151.244 (4)
C1—C61.362 (6)C9—C101.377 (5)
C1—C21.410 (7)C9—C141.394 (5)
C1—H1B0.9300C9—H9A0.9300
C2—C31.391 (5)C10—C111.389 (4)
C2—H2A0.9300C10—H10A0.9300
C3—C41.366 (5)C11—C121.401 (4)
C4—C51.396 (4)C11—C161.478 (4)
C5—C61.379 (5)C12—C131.384 (4)
C5—C71.465 (5)C13—C141.382 (4)
C6—H6A0.9300C14—H14A0.9300
C7—C81.541 (4)C15—C161.548 (5)
C8—N1—C4111.1 (2)C15—N2—C12109.5 (2)
C8—N1—H1A124.5C15—N2—H2B125.2
C4—N1—H1A124.5C12—N2—H2B125.2
C6—C1—C2121.4 (3)C10—C9—C14120.5 (3)
C6—C1—H1B119.3C10—C9—H9A119.7
C2—C1—H1B119.3C14—C9—H9A119.7
C3—C2—C1120.0 (4)C9—C10—C11118.7 (3)
C3—C2—H2A120.0C9—C10—H10A120.6
C1—C2—H2A120.0C11—C10—H10A120.6
C4—C3—C2118.4 (4)C10—C11—C12120.8 (3)
C4—C3—Cl1119.7 (3)C10—C11—C16134.1 (3)
C2—C3—Cl1121.8 (3)C12—C11—C16105.0 (3)
C3—C4—C5120.7 (3)C13—C12—N2126.7 (3)
C3—C4—N1128.4 (3)C13—C12—C11120.1 (3)
C5—C4—N1110.9 (3)N2—C12—C11113.2 (2)
C6—C5—C4121.6 (4)C14—C13—C12118.9 (3)
C6—C5—C7131.6 (3)C14—C13—Cl2121.9 (2)
C4—C5—C7106.8 (3)C12—C13—Cl2119.2 (2)
C1—C6—C5117.9 (4)C13—C14—C9121.0 (3)
C1—C6—H6A121.1C13—C14—H14A119.5
C5—C6—H6A121.1C9—C14—H14A119.5
O1—C7—C5131.5 (3)O4—C15—N2126.6 (3)
O1—C7—C8123.4 (3)O4—C15—C16125.7 (3)
C5—C7—C8105.0 (3)N2—C15—C16107.7 (3)
O2—C8—N1128.3 (3)O3—C16—C11128.3 (3)
O2—C8—C7125.5 (3)O3—C16—C15127.2 (3)
N1—C8—C7106.2 (3)C11—C16—C15104.5 (3)
C6—C1—C2—C30.1 (6)C14—C9—C10—C110.8 (5)
C1—C2—C3—C4−0.7 (5)C9—C10—C11—C12−1.3 (4)
C1—C2—C3—Cl1−178.2 (3)C9—C10—C11—C16−177.5 (3)
C2—C3—C4—C50.8 (5)C15—N2—C12—C13−176.5 (3)
Cl1—C3—C4—C5178.4 (2)C15—N2—C12—C111.6 (3)
C2—C3—C4—N1−179.5 (3)C10—C11—C12—C130.8 (4)
Cl1—C3—C4—N1−1.9 (5)C16—C11—C12—C13178.0 (2)
C8—N1—C4—C3178.8 (3)C10—C11—C12—N2−177.4 (2)
C8—N1—C4—C5−1.5 (4)C16—C11—C12—N2−0.2 (3)
C3—C4—C5—C6−0.4 (5)N2—C12—C13—C14178.0 (3)
N1—C4—C5—C6179.8 (3)C11—C12—C13—C140.1 (4)
C3—C4—C5—C7−179.6 (3)N2—C12—C13—Cl2−1.0 (4)
N1—C4—C5—C70.6 (3)C11—C12—C13—Cl2−179.0 (2)
C2—C1—C6—C50.3 (6)C12—C13—C14—C9−0.6 (4)
C4—C5—C6—C1−0.1 (5)Cl2—C13—C14—C9178.5 (2)
C7—C5—C6—C1178.8 (3)C10—C9—C14—C130.1 (5)
C6—C5—C7—O12.9 (6)C12—N2—C15—O4176.1 (3)
C4—C5—C7—O1−178.1 (4)C12—N2—C15—C16−2.2 (3)
C6—C5—C7—C8−178.7 (3)C10—C11—C16—O3−3.6 (6)
C4—C5—C7—C80.3 (3)C12—C11—C16—O3179.8 (3)
C4—N1—C8—O2−178.7 (3)C10—C11—C16—C15175.6 (3)
C4—N1—C8—C71.6 (3)C12—C11—C16—C15−1.0 (3)
O1—C7—C8—O2−2.3 (5)O4—C15—C16—O32.9 (6)
C5—C7—C8—O2179.1 (3)N2—C15—C16—O3−178.8 (3)
O1—C7—C8—N1177.4 (3)O4—C15—C16—C11−176.3 (3)
C5—C7—C8—N1−1.2 (3)N2—C15—C16—C112.0 (3)
D—H···AD—HH···AD···AD—H···A
N1—H1A···O4i0.862.122.961 (4)165
N2—H2B···O4i0.862.102.923 (3)160
C14—H14A···O2ii0.932.463.385 (4)172
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯O4i0.862.122.961 (4)165
N2—H2B⋯O4i0.862.102.923 (3)160
C14—H14A⋯O2ii0.932.463.385 (4)172

Symmetry codes: (i) ; (ii) .

  3 in total

1.  Syntheses and antiproliferative evaluation of oxyphenisatin derivatives.

Authors:  Muhammed K Uddin; Serge G Reignier; Tom Coulter; Christian Montalbetti; Charlotta Grånäs; Steven Butcher; Christian Krog-Jensen; Jakob Felding
Journal:  Bioorg Med Chem Lett       Date:  2007-02-25       Impact factor: 2.823

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  3 in total

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