Literature DB >> 21580099

5-Bromo-2-(4-fluoro-phen-yl)-7-methyl-3-methyl-sulfinyl-1-benzofuran.

Hong Dae Choi, Pil Ja Seo, Byeng Wha Son, Uk Lee.   

Abstract

In the title compound, C(16)H(12)BrFO(2)S, the O atom and the methyl group of the methyl-sulfinyl substituent are located on opposite sides of the plane through the benzofuran fragment. The 4-fluoro-phenyl ring is rotated out of the benzofuran plane, as indicated by the dihedral angle of 16.17 (5)°. The crystal structure exhibits an inter-molecular C-H⋯O hydrogen bond and a Br⋯O halogen inter-action [3.112 (2) Å].

Entities:  

Year:  2009        PMID: 21580099      PMCID: PMC2980175          DOI: 10.1107/S160053680905418X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the crystal structures of similar 2-(4-fluoro­phen­yl)-5-halo-3-methyl­sulfinyl-1-benzofuran derivatives, see: Choi et al. (2009a ▶,b ▶, 2010 ▶). For the pharmacological activity of benzofuran compounds, see: Howlett et al. (1999 ▶); Twyman & Allsop (1999 ▶). For natural products with benzofuran rings, see: Akgul & Anil (2003 ▶); Soekamto et al. (2003 ▶). For a review of halogen inter­actions, see: Politzer et al. (2007 ▶).

Experimental

Crystal data

C16H12BrFO2S M = 367.23 Triclinic, a = 7.5313 (6) Å b = 9.8089 (7) Å c = 10.9117 (8) Å α = 106.567 (1)° β = 92.634 (1)° γ = 109.526 (1)° V = 719.23 (9) Å3 Z = 2 Mo Kα radiation μ = 3.01 mm−1 T = 173 K 0.60 × 0.40 × 0.20 mm

Data collection

Bruker SMART APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.586, T max = 0.746 6248 measured reflections 3083 independent reflections 2802 reflections with I > 2σ(I) R int = 0.016

Refinement

R[F 2 > 2σ(F 2)] = 0.023 wR(F 2) = 0.060 S = 1.05 3083 reflections 192 parameters H-atom parameters constrained Δρmax = 0.34 e Å−3 Δρmin = −0.39 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 1998 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S160053680905418X/kp2245sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053680905418X/kp2245Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H12BrFO2SZ = 2
Mr = 367.23F(000) = 368
Triclinic, P1Dx = 1.696 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.5313 (6) ÅCell parameters from 4231 reflections
b = 9.8089 (7) Åθ = 2.3–27.4°
c = 10.9117 (8) ŵ = 3.01 mm1
α = 106.567 (1)°T = 173 K
β = 92.634 (1)°Block, colourless
γ = 109.526 (1)°0.60 × 0.40 × 0.20 mm
V = 719.23 (9) Å3
Bruker SMART APEXII CCD diffractometer3083 independent reflections
Radiation source: Rotating Anode2802 reflections with I > 2σ(I)
HELIOSRint = 0.016
Detector resolution: 10.0 pixels mm-1θmax = 27.0°, θmin = 2.0°
φ and ω scansh = −9→9
Absorption correction: multi-scan (SADABS; Bruker, 2009)k = −12→12
Tmin = 0.586, Tmax = 0.746l = −13→13
6248 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.023Hydrogen site location: difference Fourier map
wR(F2) = 0.060H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.0302P)2 + 0.3573P] where P = (Fo2 + 2Fc2)/3
3083 reflections(Δ/σ)max < 0.001
192 parametersΔρmax = 0.34 e Å3
0 restraintsΔρmin = −0.39 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Br0.56892 (3)0.75819 (2)1.066631 (17)0.02668 (7)
S0.18420 (7)0.22498 (5)0.55788 (4)0.02381 (11)
O10.31077 (18)0.62985 (14)0.50645 (12)0.0214 (3)
O20.3359 (2)0.21723 (16)0.64548 (14)0.0320 (3)
F−0.0757 (2)0.21942 (17)−0.05951 (11)0.0476 (4)
C10.2455 (3)0.4180 (2)0.56565 (17)0.0207 (4)
C20.3406 (3)0.5483 (2)0.67945 (17)0.0197 (3)
C30.3970 (3)0.5713 (2)0.81000 (17)0.0217 (4)
H30.37260.49010.84270.026*
C40.4906 (3)0.7202 (2)0.88760 (17)0.0216 (4)
C50.5318 (3)0.8455 (2)0.84171 (18)0.0217 (4)
H50.59730.94340.89850.026*
C60.4760 (3)0.8255 (2)0.71248 (18)0.0207 (4)
C70.3798 (2)0.6748 (2)0.63653 (17)0.0193 (3)
C80.2316 (2)0.4724 (2)0.46474 (18)0.0203 (4)
C90.1517 (3)0.4038 (2)0.32705 (17)0.0215 (4)
C100.0209 (3)0.2541 (2)0.27673 (19)0.0283 (4)
H10−0.01670.19610.33160.034*
C11−0.0534 (3)0.1909 (3)0.1460 (2)0.0332 (5)
H11−0.13760.09030.11210.040*
C120.0004 (3)0.2802 (3)0.06824 (19)0.0318 (5)
C130.1276 (3)0.4285 (3)0.11316 (19)0.0298 (4)
H130.16070.48600.05750.036*
C140.2051 (3)0.4901 (2)0.24326 (19)0.0252 (4)
H140.29330.58950.27520.030*
C150.5111 (3)0.9548 (2)0.65832 (19)0.0268 (4)
H15A0.55310.92860.57600.040*
H15B0.60761.04480.71680.040*
H15C0.39520.97370.64750.040*
C16−0.0164 (3)0.2099 (3)0.6426 (2)0.0351 (5)
H16A−0.06390.11110.65380.053*
H16B−0.11500.22300.59360.053*
H16C0.02220.28740.72580.053*
U11U22U33U12U13U23
Br0.03804 (12)0.02214 (11)0.01767 (10)0.01046 (8)−0.00056 (7)0.00439 (7)
S0.0331 (3)0.0152 (2)0.0220 (2)0.00897 (19)0.00200 (19)0.00445 (17)
O10.0269 (7)0.0172 (6)0.0193 (6)0.0071 (5)0.0009 (5)0.0062 (5)
O20.0397 (8)0.0274 (8)0.0342 (8)0.0167 (7)0.0012 (6)0.0128 (6)
F0.0504 (8)0.0559 (9)0.0194 (6)0.0055 (7)−0.0086 (6)0.0053 (6)
C10.0239 (9)0.0164 (8)0.0205 (9)0.0066 (7)0.0025 (7)0.0052 (7)
C20.0223 (8)0.0170 (8)0.0208 (9)0.0087 (7)0.0039 (7)0.0055 (7)
C30.0282 (9)0.0175 (9)0.0211 (9)0.0095 (7)0.0039 (7)0.0075 (7)
C40.0260 (9)0.0226 (9)0.0174 (8)0.0112 (7)0.0019 (7)0.0058 (7)
C50.0232 (9)0.0159 (9)0.0232 (9)0.0071 (7)0.0020 (7)0.0026 (7)
C60.0222 (9)0.0170 (9)0.0239 (9)0.0083 (7)0.0051 (7)0.0065 (7)
C70.0211 (8)0.0186 (9)0.0186 (8)0.0076 (7)0.0015 (7)0.0062 (7)
C80.0200 (8)0.0173 (9)0.0221 (9)0.0063 (7)0.0034 (7)0.0046 (7)
C90.0203 (8)0.0242 (9)0.0202 (9)0.0095 (7)0.0020 (7)0.0059 (7)
C100.0276 (10)0.0276 (10)0.0253 (10)0.0051 (8)0.0010 (8)0.0083 (8)
C110.0282 (10)0.0311 (11)0.0287 (11)0.0026 (9)−0.0032 (8)0.0033 (9)
C120.0290 (10)0.0415 (12)0.0187 (9)0.0108 (9)−0.0018 (8)0.0037 (9)
C130.0310 (10)0.0368 (12)0.0233 (10)0.0117 (9)0.0031 (8)0.0130 (9)
C140.0259 (9)0.0247 (10)0.0242 (9)0.0093 (8)0.0022 (8)0.0070 (8)
C150.0364 (11)0.0192 (9)0.0261 (10)0.0102 (8)0.0063 (8)0.0087 (8)
C160.0333 (11)0.0280 (11)0.0443 (13)0.0068 (9)0.0101 (10)0.0164 (10)
Br—C41.907 (2)C6—C151.497 (3)
Br—O2i3.112 (2)C8—C91.463 (2)
S—O21.491 (2)C9—C101.397 (3)
S—C11.768 (2)C9—C141.401 (3)
S—C161.794 (2)C10—C111.386 (3)
O1—C71.379 (2)C10—H100.9300
O1—C81.381 (2)C11—C121.368 (3)
F—C121.360 (2)C11—H110.9300
C1—C81.368 (3)C12—C131.375 (3)
C1—C21.445 (2)C13—C141.386 (3)
C2—C71.394 (2)C13—H130.9300
C2—C31.399 (2)C14—H140.9300
C3—C41.378 (3)C15—H15A0.9600
C3—H30.9300C15—H15B0.9600
C4—C51.403 (3)C15—H15C0.9600
C5—C61.391 (3)C16—H16A0.9600
C5—H50.9300C16—H16B0.9600
C6—C71.389 (2)C16—H16C0.9600
C4—Br—O2i173.44 (7)C10—C9—C8121.62 (17)
O2—S—C1107.33 (9)C14—C9—C8119.58 (17)
O2—S—C16105.95 (10)C11—C10—C9120.85 (19)
C1—S—C1697.80 (9)C11—C10—H10119.6
C7—O1—C8106.74 (13)C9—C10—H10119.6
C8—C1—C2107.32 (16)C12—C11—C10118.3 (2)
C8—C1—S127.08 (14)C12—C11—H11120.8
C2—C1—S125.27 (14)C10—C11—H11120.8
C7—C2—C3118.96 (16)F—C12—C11118.39 (19)
C7—C2—C1105.04 (15)F—C12—C13118.55 (19)
C3—C2—C1136.00 (17)C11—C12—C13123.06 (19)
C4—C3—C2116.62 (16)C12—C13—C14118.48 (19)
C4—C3—H3121.7C12—C13—H13120.8
C2—C3—H3121.7C14—C13—H13120.8
C3—C4—C5123.42 (17)C13—C14—C9120.46 (18)
C3—C4—Br118.40 (14)C13—C14—H14119.8
C5—C4—Br118.17 (14)C9—C14—H14119.8
C6—C5—C4120.97 (17)C6—C15—H15A109.5
C6—C5—H5119.5C6—C15—H15B109.5
C4—C5—H5119.5H15A—C15—H15B109.5
C7—C6—C5114.57 (16)C6—C15—H15C109.5
C7—C6—C15121.86 (17)H15A—C15—H15C109.5
C5—C6—C15123.54 (17)H15B—C15—H15C109.5
O1—C7—C6124.01 (16)S—C16—H16A109.5
O1—C7—C2110.54 (15)S—C16—H16B109.5
C6—C7—C2125.44 (17)H16A—C16—H16B109.5
C1—C8—O1110.33 (16)S—C16—H16C109.5
C1—C8—C9135.27 (17)H16A—C16—H16C109.5
O1—C8—C9114.40 (15)H16B—C16—H16C109.5
C10—C9—C14118.79 (17)
O2—S—C1—C8138.31 (17)C1—C2—C7—O11.57 (19)
C16—S—C1—C8−112.23 (18)C3—C2—C7—C61.6 (3)
O2—S—C1—C2−34.18 (18)C1—C2—C7—C6−177.92 (17)
C16—S—C1—C275.29 (18)C2—C1—C8—O1−0.4 (2)
C8—C1—C2—C7−0.7 (2)S—C1—C8—O1−173.93 (13)
S—C1—C2—C7172.99 (14)C2—C1—C8—C9−179.25 (19)
C8—C1—C2—C3179.9 (2)S—C1—C8—C97.2 (3)
S—C1—C2—C3−6.4 (3)C7—O1—C8—C11.32 (19)
C7—C2—C3—C4−0.6 (3)C7—O1—C8—C9−179.53 (14)
C1—C2—C3—C4178.7 (2)C1—C8—C9—C1017.4 (3)
C2—C3—C4—C5−0.7 (3)O1—C8—C9—C10−161.47 (17)
C2—C3—C4—Br179.49 (13)C1—C8—C9—C14−163.3 (2)
C3—C4—C5—C61.1 (3)O1—C8—C9—C1417.8 (2)
Br—C4—C5—C6−179.08 (14)C14—C9—C10—C110.7 (3)
C4—C5—C6—C7−0.2 (3)C8—C9—C10—C11180.00 (18)
C4—C5—C6—C15178.35 (17)C9—C10—C11—C12−1.8 (3)
C8—O1—C7—C6177.69 (17)C10—C11—C12—F−178.57 (19)
C8—O1—C7—C2−1.81 (19)C10—C11—C12—C131.4 (3)
C5—C6—C7—O1179.43 (16)F—C12—C13—C14−179.89 (18)
C15—C6—C7—O10.9 (3)C11—C12—C13—C140.1 (3)
C5—C6—C7—C2−1.1 (3)C12—C13—C14—C9−1.3 (3)
C15—C6—C7—C2−179.68 (17)C10—C9—C14—C130.8 (3)
C3—C2—C7—O1−178.94 (15)C8—C9—C14—C13−178.44 (17)
D—H···AD—HH···AD···AD—H···A
C15—H15C···O2ii0.962.583.294 (2)131
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C15—H15C⋯O2i0.962.583.294 (2)131

Symmetry code: (i) .

  8 in total

1.  Inhibition of fibril formation in beta-amyloid peptide by a novel series of benzofurans.

Authors:  D R Howlett; A E Perry; F Godfrey; J E Swatton; K H Jennings; C Spitzfaden; H Wadsworth; S J Wood; R E Markwell
Journal:  Biochem J       Date:  1999-05-15       Impact factor: 3.857

2.  Benzofurans and another constituent from seeds of Styrax officinalis.

Authors:  Yurdanur Yayla Akgul; Huseyin Anil
Journal:  Phytochemistry       Date:  2003-08       Impact factor: 4.072

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

4.  An overview of halogen bonding.

Authors:  Peter Politzer; Pat Lane; Monica C Concha; Yuguang Ma; Jane S Murray
Journal:  J Mol Model       Date:  2006-09-30       Impact factor: 1.810

5.  Artoindonesianins X and Y, two isoprenylated 2-arylbenzofurans, from Artocarpus fretessi (Moraceae).

Authors:  Nunuk H Soekamto; Sjamsul A Achmad; Emilio L Ghisalberti; Euis H Hakim; Yana M Syah
Journal:  Phytochemistry       Date:  2003-10       Impact factor: 4.072

6.  5-Chloro-2-(4-fluoro-phen-yl)-3-methyl-sulfinyl-1-benzofuran.

Authors:  Hong Dae Choi; Pil Ja Seo; Byeng Wha Son; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-10-03

7.  5-Fluoro-2-(4-fluoro-phen-yl)-3-methyl-sulfinyl-1-benzofuran.

Authors:  Hong Dae Choi; Pil Ja Seo; Byeng Wha Son; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-10-03

8.  5-Bromo-2-(4-fluoro-phen-yl)-3-methyl-sulfinyl-1-benzofuran.

Authors:  Hong Dae Choi; Pil Ja Seo; Byeng Wha Son; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-12-12
  8 in total
  2 in total

1.  5-Chloro-3-ethyl-sulfinyl-2-(4-fluoro-phen-yl)-1-benzofuran.

Authors:  Hong Dae Choi; Pil Ja Seo; Byeng Wha Son; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-01-20

2.  5-Bromo-7-methyl-2-(4-methyl-phen-yl)-3-methyl-sulfinyl-1-benzofuran.

Authors:  Hong Dae Choi; Pil Ja Seo; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-11-28
  2 in total

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