Literature DB >> 21580095

Dihalogenated trichodermin (4β-acet-oxy-9,10-dibromo-12,13-epoxy-tri-chothec).

Jin-Hao Zhao, Yong Zhou, Jian-Gong Zhang, Jing-Li Cheng, Fu-Cheng Lin.   

Abstract

In the title dihalogenated trichodermin mol-ecule, C(17)H(24)Br(2)O(4) (systematic name: 9,10-dibromo-12,13-epoxy-trichothec-9-en-4β-yl acetate), the five-membered ring displays an envelope conformation, whereas the two six-membered rings show the same conformation, viz. chair. As for the seven-membered ring, the dihedral angle between the mean planes formed by the four C atoms of the envelope unit and the three C and one O atoms of the six-membered chair is 69.08 (4)°; these two mean planes are nearly perpendicular to the ep-oxy ring with angles of 87.53 (4) and 88.67 (4)°, respectively.

Entities:  

Year:  2009        PMID: 21580095      PMCID: PMC2980171          DOI: 10.1107/S1600536809054178

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the fungicidal activity of trichodermin, see: Zhang et al. (2007 ▶). Trichodermin is a member of the 4β-ace­oxy-12,13-epoxy­trichothecene family, see: Nielsen et al. (2005 ▶). For the structure of trichodermin, see: Chen et al. (2008 ▶) and for the structure of a trichodermin derivative, see: Cheng et al. (2009 ▶).

Experimental

Crystal data

C17H24Br2O4 M = 452.18 Monoclinic, a = 10.0120 (4) Å b = 8.3397 (4) Å c = 11.1235 (6) Å β = 106.6220 (10)° V = 889.97 (7) Å3 Z = 2 Mo Kα radiation μ = 4.57 mm−1 T = 296 K 0.26 × 0.20 × 0.10 mm

Data collection

Rigaku R-AXIS RAPID diffractometer Absorption correction: multi-scan (ABSCOR: Higashi, 1995 ▶) T min = 0.323, T max = 0.633 8698 measured reflections 3667 independent reflections 2752 reflections with I > 2σ(I) R int = 0.032

Refinement

R[F 2 > 2σ(F 2)] = 0.032 wR(F 2) = 0.095 S = 1.00 3667 reflections 213 parameters 1 restraint H-atom parameters constrained Δρmax = 0.67 e Å−3 Δρmin = −0.65 e Å−3 Absolute structure: Flack (1983 ▶), 1506 Friedel pairs Flack parameter: 0.000 (15) Data collection: PROCESS-AUTO (Rigaku, 2006 ▶); cell refinement: PROCESS-AUTO; data reduction: CrystalStructure (Rigaku, 2007 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809054178/si2228sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809054178/si2228Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C17H24Br2O4F(000) = 456
Mr = 452.18Dx = 1.687 Mg m3
Monoclinic, P21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ybCell parameters from 6808 reflections
a = 10.0120 (4) Åθ = 3.1–27.4°
b = 8.3397 (4) ŵ = 4.57 mm1
c = 11.1235 (6) ÅT = 296 K
β = 106.622 (1)°Chunk, colorless
V = 889.97 (7) Å30.26 × 0.20 × 0.10 mm
Z = 2
Rigaku R-AXIS RAPID diffractometer3667 independent reflections
Radiation source: rolling anode2752 reflections with I > 2σ(I)
graphiteRint = 0.032
Detector resolution: 10.00 pixels mm-1θmax = 27.4°, θmin = 3.1°
ω scansh = −12→12
Absorption correction: multi-scan (ABSCOR: Higashi, 1995)k = −10→10
Tmin = 0.323, Tmax = 0.633l = −14→14
8698 measured reflections
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH-atom parameters constrained
R[F2 > 2σ(F2)] = 0.032w = 1/[σ2(Fo2) + (0.0003P)2 + 1.980P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.095(Δ/σ)max < 0.001
S = 1.00Δρmax = 0.67 e Å3
3667 reflectionsΔρmin = −0.65 e Å3
213 parametersExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
1 restraintExtinction coefficient: 0.0189 (8)
Primary atom site location: structure-invariant direct methodsAbsolute structure: Flack (1983), 1506 Friedel pairs
Secondary atom site location: difference Fourier mapFlack parameter: 0.000 (15)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Br20.88801 (4)0.21090 (8)0.71835 (5)0.06304 (15)
Br10.75860 (5)−0.28303 (7)0.84118 (5)0.05950 (14)
O20.2048 (3)−0.0632 (4)0.6936 (3)0.0520 (9)
O10.5492 (3)−0.0758 (3)0.6377 (3)0.0377 (7)
O30.2174 (3)0.2951 (4)0.5751 (3)0.0459 (9)
C110.6197 (4)0.0702 (5)0.6879 (5)0.0376 (10)
H110.60710.14710.61890.045*
O40.3167 (4)0.5380 (4)0.6153 (5)0.0713 (13)
C70.6122 (5)0.0479 (6)0.9123 (4)0.0408 (11)
H7A0.58260.10110.97790.049*
H7B0.5681−0.05670.89860.049*
C60.5623 (4)0.1472 (5)0.7900 (4)0.0353 (10)
C120.3494 (4)−0.0260 (5)0.7073 (4)0.0378 (10)
C20.3997 (4)−0.0627 (5)0.5960 (4)0.0351 (10)
H20.3575−0.16190.55490.042*
C50.3968 (4)0.1468 (5)0.7378 (4)0.0344 (9)
C130.3133 (5)−0.1439 (7)0.7910 (5)0.0545 (14)
H13A0.3312−0.25610.77860.065*
H13B0.3253−0.11290.87750.065*
C150.6110 (5)0.3216 (6)0.8173 (5)0.0486 (14)
H15A0.71070.32430.84970.073*
H15B0.57020.36640.87810.073*
H15C0.58250.38310.74130.073*
C80.7705 (5)0.0260 (6)0.9561 (4)0.0430 (12)
H8A0.81410.13030.97550.052*
H8B0.7950−0.03671.03280.052*
C170.2139 (5)0.4560 (6)0.5912 (5)0.0469 (12)
C100.7743 (5)0.0191 (6)0.7299 (5)0.0419 (11)
H100.7879−0.06000.66930.050*
C180.0687 (6)0.5157 (7)0.5733 (6)0.0670 (17)
H18A0.03350.47430.63880.100*
H18B0.01030.48040.49340.100*
H18C0.06920.63070.57620.100*
C40.3545 (4)0.2220 (7)0.6039 (4)0.0385 (9)
H40.42400.30110.59630.046*
C140.3263 (4)0.2247 (8)0.8282 (4)0.0471 (10)
H14A0.22750.20700.79870.071*
H14B0.34480.33780.83270.071*
H14C0.36230.17810.91000.071*
C90.8282 (5)−0.0555 (6)0.8612 (5)0.0431 (12)
C30.3483 (5)0.0813 (5)0.5121 (4)0.0401 (11)
H3A0.25380.06440.45960.048*
H3B0.40800.10180.45880.048*
C160.9878 (5)−0.0734 (8)0.9074 (6)0.0654 (17)
H16A1.02990.03070.92400.098*
H16B1.0199−0.12600.84410.098*
H16C1.0130−0.13610.98290.098*
U11U22U33U12U13U23
Br20.0445 (2)0.0665 (3)0.0795 (3)−0.0133 (4)0.0199 (2)0.0144 (4)
Br10.0729 (3)0.0375 (2)0.0607 (3)0.0006 (4)0.0071 (2)0.0039 (3)
O20.0365 (16)0.058 (2)0.060 (2)−0.0100 (17)0.0112 (15)0.0042 (18)
O10.0380 (15)0.0318 (16)0.0433 (17)−0.0010 (14)0.0116 (12)−0.0068 (13)
O30.0347 (16)0.0360 (17)0.061 (2)0.0020 (14)0.0032 (15)0.0043 (15)
C110.032 (2)0.030 (2)0.049 (3)−0.0038 (19)0.0086 (19)0.0006 (19)
O40.058 (2)0.036 (2)0.118 (4)−0.0057 (19)0.021 (2)−0.010 (2)
C70.038 (2)0.047 (3)0.036 (2)−0.006 (2)0.0077 (18)0.0024 (19)
C60.036 (2)0.031 (2)0.038 (2)−0.0035 (18)0.0074 (17)−0.0069 (18)
C120.0303 (19)0.031 (2)0.049 (3)−0.0030 (19)0.0062 (18)0.0009 (19)
C20.036 (2)0.034 (2)0.034 (2)−0.007 (2)0.0081 (17)−0.0089 (18)
C50.0346 (19)0.030 (2)0.038 (2)−0.0037 (18)0.0105 (17)0.0000 (17)
C130.056 (3)0.047 (3)0.054 (3)−0.014 (3)0.006 (2)0.007 (2)
C150.048 (3)0.033 (2)0.062 (3)−0.005 (2)0.010 (2)−0.006 (2)
C80.040 (2)0.043 (3)0.041 (3)−0.005 (2)0.0032 (19)0.000 (2)
C170.045 (3)0.034 (2)0.060 (3)0.003 (2)0.014 (2)0.004 (2)
C100.037 (2)0.038 (2)0.052 (3)−0.004 (2)0.016 (2)0.005 (2)
C180.052 (3)0.053 (3)0.097 (5)0.014 (3)0.024 (3)0.012 (3)
C40.0332 (17)0.033 (2)0.047 (2)−0.003 (3)0.0073 (15)0.001 (3)
C140.0443 (19)0.052 (3)0.049 (2)0.001 (3)0.0197 (17)−0.012 (3)
C90.032 (2)0.042 (3)0.049 (3)0.000 (2)0.0023 (19)−0.001 (2)
C30.046 (2)0.043 (3)0.030 (2)−0.001 (2)0.0093 (19)−0.0010 (18)
C160.040 (3)0.075 (4)0.075 (4)0.008 (3)0.005 (3)0.005 (3)
Br2—C101.989 (5)C13—H13A0.9700
Br1—C92.012 (5)C13—H13B0.9700
O2—C121.445 (5)C15—H15A0.9600
O2—C131.461 (6)C15—H15B0.9600
O1—C111.438 (5)C15—H15C0.9600
O1—C21.439 (5)C8—C91.503 (7)
O3—C171.355 (6)C8—H8A0.9700
O3—C41.451 (5)C8—H8B0.9700
C11—C101.544 (6)C17—C181.494 (7)
C11—C61.551 (7)C10—C91.536 (7)
C11—H110.9800C10—H100.9800
O4—C171.200 (6)C18—H18A0.9600
C7—C81.530 (6)C18—H18B0.9600
C7—C61.548 (6)C18—H18C0.9600
C7—H7A0.9700C4—C31.546 (7)
C7—H7B0.9700C4—H40.9800
C6—C151.536 (6)C14—H14A0.9600
C6—C51.592 (6)C14—H14B0.9600
C12—C131.469 (7)C14—H14C0.9600
C12—C21.496 (6)C9—C161.539 (6)
C12—C51.524 (6)C3—H3A0.9700
C2—C31.518 (6)C3—H3B0.9700
C2—H20.9800C16—H16A0.9600
C5—C141.529 (6)C16—H16B0.9600
C5—C41.558 (6)C16—H16C0.9600
C12—O2—C1360.7 (3)C9—C8—C7113.7 (4)
C11—O1—C2114.3 (3)C9—C8—H8A108.8
C17—O3—C4116.4 (4)C7—C8—H8A108.8
O1—C11—C10102.8 (3)C9—C8—H8B108.8
O1—C11—C6113.1 (3)C7—C8—H8B108.8
C10—C11—C6116.2 (4)H8A—C8—H8B107.7
O1—C11—H11108.1O4—C17—O3122.7 (4)
C10—C11—H11108.1O4—C17—C18125.4 (5)
C6—C11—H11108.1O3—C17—C18111.9 (4)
C8—C7—C6112.9 (4)C9—C10—C11116.7 (4)
C8—C7—H7A109.0C9—C10—Br2109.6 (3)
C6—C7—H7A109.0C11—C10—Br2107.5 (3)
C8—C7—H7B109.0C9—C10—H10107.6
C6—C7—H7B109.0C11—C10—H10107.6
H7A—C7—H7B107.8Br2—C10—H10107.6
C15—C6—C7109.1 (4)C17—C18—H18A109.5
C15—C6—C11112.0 (4)C17—C18—H18B109.5
C7—C6—C11109.2 (4)H18A—C18—H18B109.5
C15—C6—C5108.2 (3)C17—C18—H18C109.5
C7—C6—C5111.1 (4)H18A—C18—H18C109.5
C11—C6—C5107.3 (3)H18B—C18—H18C109.5
O2—C12—C1360.2 (3)O3—C4—C3108.5 (3)
O2—C12—C2115.7 (4)O3—C4—C5111.2 (3)
C13—C12—C2126.1 (4)C3—C4—C5105.9 (4)
O2—C12—C5117.7 (4)O3—C4—H4110.4
C13—C12—C5127.5 (4)C3—C4—H4110.4
C2—C12—C5102.8 (4)C5—C4—H4110.4
O1—C2—C12108.3 (3)C5—C14—H14A109.5
O1—C2—C3113.3 (4)C5—C14—H14B109.5
C12—C2—C3102.2 (4)H14A—C14—H14B109.5
O1—C2—H2110.9C5—C14—H14C109.5
C12—C2—H2110.9H14A—C14—H14C109.5
C3—C2—H2110.9H14B—C14—H14C109.5
C12—C5—C14112.0 (4)C8—C9—C10112.6 (4)
C12—C5—C4100.7 (4)C8—C9—C16112.4 (4)
C14—C5—C4114.0 (4)C10—C9—C16113.9 (4)
C12—C5—C6108.0 (3)C8—C9—Br1108.3 (3)
C14—C5—C6112.8 (3)C10—C9—Br1105.1 (3)
C4—C5—C6108.5 (3)C16—C9—Br1103.8 (3)
O2—C13—C1259.1 (3)C2—C3—C4104.6 (4)
O2—C13—H13A117.9C2—C3—H3A110.8
C12—C13—H13A117.9C4—C3—H3A110.8
O2—C13—H13B117.9C2—C3—H3B110.8
C12—C13—H13B117.9C4—C3—H3B110.8
H13A—C13—H13B115.0H3A—C3—H3B108.9
C6—C15—H15A109.5C9—C16—H16A109.5
C6—C15—H15B109.5C9—C16—H16B109.5
H15A—C15—H15B109.5H16A—C16—H16B109.5
C6—C15—H15C109.5C9—C16—H16C109.5
H15A—C15—H15C109.5H16A—C16—H16C109.5
H15B—C15—H15C109.5H16B—C16—H16C109.5
C2—O1—C11—C10177.3 (4)C11—C6—C5—C14−178.3 (4)
C2—O1—C11—C651.2 (5)C15—C6—C5—C470.1 (5)
C8—C7—C6—C15−68.6 (5)C7—C6—C5—C4−170.1 (4)
C8—C7—C6—C1154.1 (5)C11—C6—C5—C4−50.9 (5)
C8—C7—C6—C5172.2 (4)C2—C12—C13—O2−101.5 (5)
O1—C11—C6—C15−165.1 (3)C5—C12—C13—O2103.6 (5)
C10—C11—C6—C1576.2 (5)C6—C7—C8—C9−58.6 (5)
O1—C11—C6—C773.9 (4)C4—O3—C17—O47.5 (7)
C10—C11—C6—C7−44.7 (5)C4—O3—C17—C18−173.4 (4)
O1—C11—C6—C5−46.6 (5)O1—C11—C10—C9−85.2 (5)
C10—C11—C6—C5−165.2 (4)C6—C11—C10—C938.9 (6)
C13—O2—C12—C2118.6 (5)O1—C11—C10—Br2151.3 (3)
C13—O2—C12—C5−119.5 (5)C6—C11—C10—Br2−84.6 (4)
C11—O1—C2—C12−63.9 (5)C17—O3—C4—C3−145.6 (4)
C11—O1—C2—C348.7 (5)C17—O3—C4—C598.4 (5)
O2—C12—C2—O1−159.2 (3)C12—C5—C4—O394.1 (4)
C13—C12—C2—O1−88.6 (5)C14—C5—C4—O3−26.0 (6)
C5—C12—C2—O171.2 (4)C6—C5—C4—O3−152.6 (4)
O2—C12—C2—C380.9 (4)C12—C5—C4—C3−23.5 (4)
C13—C12—C2—C3151.5 (4)C14—C5—C4—C3−143.6 (4)
C5—C12—C2—C3−48.7 (4)C6—C5—C4—C389.8 (4)
O2—C12—C5—C1437.6 (5)C7—C8—C9—C1048.9 (5)
C13—C12—C5—C14−34.7 (6)C7—C8—C9—C16179.1 (4)
C2—C12—C5—C14165.9 (3)C7—C8—C9—Br1−66.8 (4)
O2—C12—C5—C4−84.0 (4)C11—C10—C9—C8−39.4 (6)
C13—C12—C5—C4−156.2 (4)Br2—C10—C9—C883.1 (4)
C2—C12—C5—C444.3 (4)C11—C10—C9—C16−168.8 (4)
O2—C12—C5—C6162.4 (4)Br2—C10—C9—C16−46.3 (5)
C13—C12—C5—C690.1 (5)C11—C10—C9—Br178.3 (4)
C2—C12—C5—C6−69.3 (4)Br2—C10—C9—Br1−159.3 (2)
C15—C6—C5—C12178.4 (4)O1—C2—C3—C4−83.8 (4)
C7—C6—C5—C12−61.8 (5)C12—C2—C3—C432.6 (4)
C11—C6—C5—C1257.4 (4)O3—C4—C3—C2−124.6 (4)
C15—C6—C5—C14−57.3 (5)C5—C4—C3—C2−5.1 (4)
C7—C6—C5—C1462.5 (5)
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