| Literature DB >> 21580095 |
Jin-Hao Zhao, Yong Zhou, Jian-Gong Zhang, Jing-Li Cheng, Fu-Cheng Lin.
Abstract
In the title dihalogenated trichodermin mol-ecule, C(17)H(24)Br(2)O(4) (systematic name: 9,10-dibromo-12,13-epoxy-trichothec-9-en-4β-yl acetate), the five-membered ring displays an envelope conformation, whereas the two six-membered rings show the same conformation, viz. chair. As for the seven-membered ring, the dihedral angle between the mean planes formed by the four C atoms of the envelope unit and the three C and one O atoms of the six-membered chair is 69.08 (4)°; these two mean planes are nearly perpendicular to the ep-oxy ring with angles of 87.53 (4) and 88.67 (4)°, respectively.Entities:
Year: 2009 PMID: 21580095 PMCID: PMC2980171 DOI: 10.1107/S1600536809054178
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C17H24Br2O4 | |
| Monoclinic, | Mo |
| Hall symbol: P 2yb | Cell parameters from 6808 reflections |
| θ = 3.1–27.4° | |
| µ = 4.57 mm−1 | |
| β = 106.622 (1)° | Chunk, colorless |
| 0.26 × 0.20 × 0.10 mm | |
| Rigaku R-AXIS RAPID diffractometer | 3667 independent reflections |
| Radiation source: rolling anode | 2752 reflections with |
| graphite | |
| Detector resolution: 10.00 pixels mm-1 | θmax = 27.4°, θmin = 3.1° |
| ω scans | |
| Absorption correction: multi-scan ( | |
| 8698 measured reflections |
| Refinement on | Hydrogen site location: inferred from neighbouring sites |
| Least-squares matrix: full | H-atom parameters constrained |
| (Δ/σ)max < 0.001 | |
| Δρmax = 0.67 e Å−3 | |
| 3667 reflections | Δρmin = −0.65 e Å−3 |
| 213 parameters | Extinction correction: |
| 1 restraint | Extinction coefficient: 0.0189 (8) |
| Primary atom site location: structure-invariant direct methods | Absolute structure: Flack (1983), 1506 Friedel pairs |
| Secondary atom site location: difference Fourier map | Flack parameter: 0.000 (15) |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Br2 | 0.88801 (4) | 0.21090 (8) | 0.71835 (5) | 0.06304 (15) | |
| Br1 | 0.75860 (5) | −0.28303 (7) | 0.84118 (5) | 0.05950 (14) | |
| O2 | 0.2048 (3) | −0.0632 (4) | 0.6936 (3) | 0.0520 (9) | |
| O1 | 0.5492 (3) | −0.0758 (3) | 0.6377 (3) | 0.0377 (7) | |
| O3 | 0.2174 (3) | 0.2951 (4) | 0.5751 (3) | 0.0459 (9) | |
| C11 | 0.6197 (4) | 0.0702 (5) | 0.6879 (5) | 0.0376 (10) | |
| H11 | 0.6071 | 0.1471 | 0.6189 | 0.045* | |
| O4 | 0.3167 (4) | 0.5380 (4) | 0.6153 (5) | 0.0713 (13) | |
| C7 | 0.6122 (5) | 0.0479 (6) | 0.9123 (4) | 0.0408 (11) | |
| H7A | 0.5826 | 0.1011 | 0.9779 | 0.049* | |
| H7B | 0.5681 | −0.0567 | 0.8986 | 0.049* | |
| C6 | 0.5623 (4) | 0.1472 (5) | 0.7900 (4) | 0.0353 (10) | |
| C12 | 0.3494 (4) | −0.0260 (5) | 0.7073 (4) | 0.0378 (10) | |
| C2 | 0.3997 (4) | −0.0627 (5) | 0.5960 (4) | 0.0351 (10) | |
| H2 | 0.3575 | −0.1619 | 0.5549 | 0.042* | |
| C5 | 0.3968 (4) | 0.1468 (5) | 0.7378 (4) | 0.0344 (9) | |
| C13 | 0.3133 (5) | −0.1439 (7) | 0.7910 (5) | 0.0545 (14) | |
| H13A | 0.3312 | −0.2561 | 0.7786 | 0.065* | |
| H13B | 0.3253 | −0.1129 | 0.8775 | 0.065* | |
| C15 | 0.6110 (5) | 0.3216 (6) | 0.8173 (5) | 0.0486 (14) | |
| H15A | 0.7107 | 0.3243 | 0.8497 | 0.073* | |
| H15B | 0.5702 | 0.3664 | 0.8781 | 0.073* | |
| H15C | 0.5825 | 0.3831 | 0.7413 | 0.073* | |
| C8 | 0.7705 (5) | 0.0260 (6) | 0.9561 (4) | 0.0430 (12) | |
| H8A | 0.8141 | 0.1303 | 0.9755 | 0.052* | |
| H8B | 0.7950 | −0.0367 | 1.0328 | 0.052* | |
| C17 | 0.2139 (5) | 0.4560 (6) | 0.5912 (5) | 0.0469 (12) | |
| C10 | 0.7743 (5) | 0.0191 (6) | 0.7299 (5) | 0.0419 (11) | |
| H10 | 0.7879 | −0.0600 | 0.6693 | 0.050* | |
| C18 | 0.0687 (6) | 0.5157 (7) | 0.5733 (6) | 0.0670 (17) | |
| H18A | 0.0335 | 0.4743 | 0.6388 | 0.100* | |
| H18B | 0.0103 | 0.4804 | 0.4934 | 0.100* | |
| H18C | 0.0692 | 0.6307 | 0.5762 | 0.100* | |
| C4 | 0.3545 (4) | 0.2220 (7) | 0.6039 (4) | 0.0385 (9) | |
| H4 | 0.4240 | 0.3011 | 0.5963 | 0.046* | |
| C14 | 0.3263 (4) | 0.2247 (8) | 0.8282 (4) | 0.0471 (10) | |
| H14A | 0.2275 | 0.2070 | 0.7987 | 0.071* | |
| H14B | 0.3448 | 0.3378 | 0.8327 | 0.071* | |
| H14C | 0.3623 | 0.1781 | 0.9100 | 0.071* | |
| C9 | 0.8282 (5) | −0.0555 (6) | 0.8612 (5) | 0.0431 (12) | |
| C3 | 0.3483 (5) | 0.0813 (5) | 0.5121 (4) | 0.0401 (11) | |
| H3A | 0.2538 | 0.0644 | 0.4596 | 0.048* | |
| H3B | 0.4080 | 0.1018 | 0.4588 | 0.048* | |
| C16 | 0.9878 (5) | −0.0734 (8) | 0.9074 (6) | 0.0654 (17) | |
| H16A | 1.0299 | 0.0307 | 0.9240 | 0.098* | |
| H16B | 1.0199 | −0.1260 | 0.8441 | 0.098* | |
| H16C | 1.0130 | −0.1361 | 0.9829 | 0.098* |
| Br2 | 0.0445 (2) | 0.0665 (3) | 0.0795 (3) | −0.0133 (4) | 0.0199 (2) | 0.0144 (4) |
| Br1 | 0.0729 (3) | 0.0375 (2) | 0.0607 (3) | 0.0006 (4) | 0.0071 (2) | 0.0039 (3) |
| O2 | 0.0365 (16) | 0.058 (2) | 0.060 (2) | −0.0100 (17) | 0.0112 (15) | 0.0042 (18) |
| O1 | 0.0380 (15) | 0.0318 (16) | 0.0433 (17) | −0.0010 (14) | 0.0116 (12) | −0.0068 (13) |
| O3 | 0.0347 (16) | 0.0360 (17) | 0.061 (2) | 0.0020 (14) | 0.0032 (15) | 0.0043 (15) |
| C11 | 0.032 (2) | 0.030 (2) | 0.049 (3) | −0.0038 (19) | 0.0086 (19) | 0.0006 (19) |
| O4 | 0.058 (2) | 0.036 (2) | 0.118 (4) | −0.0057 (19) | 0.021 (2) | −0.010 (2) |
| C7 | 0.038 (2) | 0.047 (3) | 0.036 (2) | −0.006 (2) | 0.0077 (18) | 0.0024 (19) |
| C6 | 0.036 (2) | 0.031 (2) | 0.038 (2) | −0.0035 (18) | 0.0074 (17) | −0.0069 (18) |
| C12 | 0.0303 (19) | 0.031 (2) | 0.049 (3) | −0.0030 (19) | 0.0062 (18) | 0.0009 (19) |
| C2 | 0.036 (2) | 0.034 (2) | 0.034 (2) | −0.007 (2) | 0.0081 (17) | −0.0089 (18) |
| C5 | 0.0346 (19) | 0.030 (2) | 0.038 (2) | −0.0037 (18) | 0.0105 (17) | 0.0000 (17) |
| C13 | 0.056 (3) | 0.047 (3) | 0.054 (3) | −0.014 (3) | 0.006 (2) | 0.007 (2) |
| C15 | 0.048 (3) | 0.033 (2) | 0.062 (3) | −0.005 (2) | 0.010 (2) | −0.006 (2) |
| C8 | 0.040 (2) | 0.043 (3) | 0.041 (3) | −0.005 (2) | 0.0032 (19) | 0.000 (2) |
| C17 | 0.045 (3) | 0.034 (2) | 0.060 (3) | 0.003 (2) | 0.014 (2) | 0.004 (2) |
| C10 | 0.037 (2) | 0.038 (2) | 0.052 (3) | −0.004 (2) | 0.016 (2) | 0.005 (2) |
| C18 | 0.052 (3) | 0.053 (3) | 0.097 (5) | 0.014 (3) | 0.024 (3) | 0.012 (3) |
| C4 | 0.0332 (17) | 0.033 (2) | 0.047 (2) | −0.003 (3) | 0.0073 (15) | 0.001 (3) |
| C14 | 0.0443 (19) | 0.052 (3) | 0.049 (2) | 0.001 (3) | 0.0197 (17) | −0.012 (3) |
| C9 | 0.032 (2) | 0.042 (3) | 0.049 (3) | 0.000 (2) | 0.0023 (19) | −0.001 (2) |
| C3 | 0.046 (2) | 0.043 (3) | 0.030 (2) | −0.001 (2) | 0.0093 (19) | −0.0010 (18) |
| C16 | 0.040 (3) | 0.075 (4) | 0.075 (4) | 0.008 (3) | 0.005 (3) | 0.005 (3) |
| Br2—C10 | 1.989 (5) | C13—H13A | 0.9700 |
| Br1—C9 | 2.012 (5) | C13—H13B | 0.9700 |
| O2—C12 | 1.445 (5) | C15—H15A | 0.9600 |
| O2—C13 | 1.461 (6) | C15—H15B | 0.9600 |
| O1—C11 | 1.438 (5) | C15—H15C | 0.9600 |
| O1—C2 | 1.439 (5) | C8—C9 | 1.503 (7) |
| O3—C17 | 1.355 (6) | C8—H8A | 0.9700 |
| O3—C4 | 1.451 (5) | C8—H8B | 0.9700 |
| C11—C10 | 1.544 (6) | C17—C18 | 1.494 (7) |
| C11—C6 | 1.551 (7) | C10—C9 | 1.536 (7) |
| C11—H11 | 0.9800 | C10—H10 | 0.9800 |
| O4—C17 | 1.200 (6) | C18—H18A | 0.9600 |
| C7—C8 | 1.530 (6) | C18—H18B | 0.9600 |
| C7—C6 | 1.548 (6) | C18—H18C | 0.9600 |
| C7—H7A | 0.9700 | C4—C3 | 1.546 (7) |
| C7—H7B | 0.9700 | C4—H4 | 0.9800 |
| C6—C15 | 1.536 (6) | C14—H14A | 0.9600 |
| C6—C5 | 1.592 (6) | C14—H14B | 0.9600 |
| C12—C13 | 1.469 (7) | C14—H14C | 0.9600 |
| C12—C2 | 1.496 (6) | C9—C16 | 1.539 (6) |
| C12—C5 | 1.524 (6) | C3—H3A | 0.9700 |
| C2—C3 | 1.518 (6) | C3—H3B | 0.9700 |
| C2—H2 | 0.9800 | C16—H16A | 0.9600 |
| C5—C14 | 1.529 (6) | C16—H16B | 0.9600 |
| C5—C4 | 1.558 (6) | C16—H16C | 0.9600 |
| C12—O2—C13 | 60.7 (3) | C9—C8—C7 | 113.7 (4) |
| C11—O1—C2 | 114.3 (3) | C9—C8—H8A | 108.8 |
| C17—O3—C4 | 116.4 (4) | C7—C8—H8A | 108.8 |
| O1—C11—C10 | 102.8 (3) | C9—C8—H8B | 108.8 |
| O1—C11—C6 | 113.1 (3) | C7—C8—H8B | 108.8 |
| C10—C11—C6 | 116.2 (4) | H8A—C8—H8B | 107.7 |
| O1—C11—H11 | 108.1 | O4—C17—O3 | 122.7 (4) |
| C10—C11—H11 | 108.1 | O4—C17—C18 | 125.4 (5) |
| C6—C11—H11 | 108.1 | O3—C17—C18 | 111.9 (4) |
| C8—C7—C6 | 112.9 (4) | C9—C10—C11 | 116.7 (4) |
| C8—C7—H7A | 109.0 | C9—C10—Br2 | 109.6 (3) |
| C6—C7—H7A | 109.0 | C11—C10—Br2 | 107.5 (3) |
| C8—C7—H7B | 109.0 | C9—C10—H10 | 107.6 |
| C6—C7—H7B | 109.0 | C11—C10—H10 | 107.6 |
| H7A—C7—H7B | 107.8 | Br2—C10—H10 | 107.6 |
| C15—C6—C7 | 109.1 (4) | C17—C18—H18A | 109.5 |
| C15—C6—C11 | 112.0 (4) | C17—C18—H18B | 109.5 |
| C7—C6—C11 | 109.2 (4) | H18A—C18—H18B | 109.5 |
| C15—C6—C5 | 108.2 (3) | C17—C18—H18C | 109.5 |
| C7—C6—C5 | 111.1 (4) | H18A—C18—H18C | 109.5 |
| C11—C6—C5 | 107.3 (3) | H18B—C18—H18C | 109.5 |
| O2—C12—C13 | 60.2 (3) | O3—C4—C3 | 108.5 (3) |
| O2—C12—C2 | 115.7 (4) | O3—C4—C5 | 111.2 (3) |
| C13—C12—C2 | 126.1 (4) | C3—C4—C5 | 105.9 (4) |
| O2—C12—C5 | 117.7 (4) | O3—C4—H4 | 110.4 |
| C13—C12—C5 | 127.5 (4) | C3—C4—H4 | 110.4 |
| C2—C12—C5 | 102.8 (4) | C5—C4—H4 | 110.4 |
| O1—C2—C12 | 108.3 (3) | C5—C14—H14A | 109.5 |
| O1—C2—C3 | 113.3 (4) | C5—C14—H14B | 109.5 |
| C12—C2—C3 | 102.2 (4) | H14A—C14—H14B | 109.5 |
| O1—C2—H2 | 110.9 | C5—C14—H14C | 109.5 |
| C12—C2—H2 | 110.9 | H14A—C14—H14C | 109.5 |
| C3—C2—H2 | 110.9 | H14B—C14—H14C | 109.5 |
| C12—C5—C14 | 112.0 (4) | C8—C9—C10 | 112.6 (4) |
| C12—C5—C4 | 100.7 (4) | C8—C9—C16 | 112.4 (4) |
| C14—C5—C4 | 114.0 (4) | C10—C9—C16 | 113.9 (4) |
| C12—C5—C6 | 108.0 (3) | C8—C9—Br1 | 108.3 (3) |
| C14—C5—C6 | 112.8 (3) | C10—C9—Br1 | 105.1 (3) |
| C4—C5—C6 | 108.5 (3) | C16—C9—Br1 | 103.8 (3) |
| O2—C13—C12 | 59.1 (3) | C2—C3—C4 | 104.6 (4) |
| O2—C13—H13A | 117.9 | C2—C3—H3A | 110.8 |
| C12—C13—H13A | 117.9 | C4—C3—H3A | 110.8 |
| O2—C13—H13B | 117.9 | C2—C3—H3B | 110.8 |
| C12—C13—H13B | 117.9 | C4—C3—H3B | 110.8 |
| H13A—C13—H13B | 115.0 | H3A—C3—H3B | 108.9 |
| C6—C15—H15A | 109.5 | C9—C16—H16A | 109.5 |
| C6—C15—H15B | 109.5 | C9—C16—H16B | 109.5 |
| H15A—C15—H15B | 109.5 | H16A—C16—H16B | 109.5 |
| C6—C15—H15C | 109.5 | C9—C16—H16C | 109.5 |
| H15A—C15—H15C | 109.5 | H16A—C16—H16C | 109.5 |
| H15B—C15—H15C | 109.5 | H16B—C16—H16C | 109.5 |
| C2—O1—C11—C10 | 177.3 (4) | C11—C6—C5—C14 | −178.3 (4) |
| C2—O1—C11—C6 | 51.2 (5) | C15—C6—C5—C4 | 70.1 (5) |
| C8—C7—C6—C15 | −68.6 (5) | C7—C6—C5—C4 | −170.1 (4) |
| C8—C7—C6—C11 | 54.1 (5) | C11—C6—C5—C4 | −50.9 (5) |
| C8—C7—C6—C5 | 172.2 (4) | C2—C12—C13—O2 | −101.5 (5) |
| O1—C11—C6—C15 | −165.1 (3) | C5—C12—C13—O2 | 103.6 (5) |
| C10—C11—C6—C15 | 76.2 (5) | C6—C7—C8—C9 | −58.6 (5) |
| O1—C11—C6—C7 | 73.9 (4) | C4—O3—C17—O4 | 7.5 (7) |
| C10—C11—C6—C7 | −44.7 (5) | C4—O3—C17—C18 | −173.4 (4) |
| O1—C11—C6—C5 | −46.6 (5) | O1—C11—C10—C9 | −85.2 (5) |
| C10—C11—C6—C5 | −165.2 (4) | C6—C11—C10—C9 | 38.9 (6) |
| C13—O2—C12—C2 | 118.6 (5) | O1—C11—C10—Br2 | 151.3 (3) |
| C13—O2—C12—C5 | −119.5 (5) | C6—C11—C10—Br2 | −84.6 (4) |
| C11—O1—C2—C12 | −63.9 (5) | C17—O3—C4—C3 | −145.6 (4) |
| C11—O1—C2—C3 | 48.7 (5) | C17—O3—C4—C5 | 98.4 (5) |
| O2—C12—C2—O1 | −159.2 (3) | C12—C5—C4—O3 | 94.1 (4) |
| C13—C12—C2—O1 | −88.6 (5) | C14—C5—C4—O3 | −26.0 (6) |
| C5—C12—C2—O1 | 71.2 (4) | C6—C5—C4—O3 | −152.6 (4) |
| O2—C12—C2—C3 | 80.9 (4) | C12—C5—C4—C3 | −23.5 (4) |
| C13—C12—C2—C3 | 151.5 (4) | C14—C5—C4—C3 | −143.6 (4) |
| C5—C12—C2—C3 | −48.7 (4) | C6—C5—C4—C3 | 89.8 (4) |
| O2—C12—C5—C14 | 37.6 (5) | C7—C8—C9—C10 | 48.9 (5) |
| C13—C12—C5—C14 | −34.7 (6) | C7—C8—C9—C16 | 179.1 (4) |
| C2—C12—C5—C14 | 165.9 (3) | C7—C8—C9—Br1 | −66.8 (4) |
| O2—C12—C5—C4 | −84.0 (4) | C11—C10—C9—C8 | −39.4 (6) |
| C13—C12—C5—C4 | −156.2 (4) | Br2—C10—C9—C8 | 83.1 (4) |
| C2—C12—C5—C4 | 44.3 (4) | C11—C10—C9—C16 | −168.8 (4) |
| O2—C12—C5—C6 | 162.4 (4) | Br2—C10—C9—C16 | −46.3 (5) |
| C13—C12—C5—C6 | 90.1 (5) | C11—C10—C9—Br1 | 78.3 (4) |
| C2—C12—C5—C6 | −69.3 (4) | Br2—C10—C9—Br1 | −159.3 (2) |
| C15—C6—C5—C12 | 178.4 (4) | O1—C2—C3—C4 | −83.8 (4) |
| C7—C6—C5—C12 | −61.8 (5) | C12—C2—C3—C4 | 32.6 (4) |
| C11—C6—C5—C12 | 57.4 (4) | O3—C4—C3—C2 | −124.6 (4) |
| C15—C6—C5—C14 | −57.3 (5) | C5—C4—C3—C2 | −5.1 (4) |
| C7—C6—C5—C14 | 62.5 (5) |