Literature DB >> 21578465

Trichodermol (4α-hydr-oxy-12,13-epoxy-trichothec-9-ene).

Jing-Li Cheng, Yong Zhou, Fu-Cheng Lin, Jin-Hao Zhao, Guo-Nian Zhu.   

Abstract

In the title compound, C(15)H(22)O(3), the five-membered ring displays an envelope conformation, whereas the two six-membered rings show different conformations, viz. chair and half-chair. In the crystal, mol-ecules are linked through inter-molecular O-H⋯O hydrogen bonds, forming chains running along the b axis.

Entities:  

Year:  2009        PMID: 21578465      PMCID: PMC2971347          DOI: 10.1107/S1600536809044080

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the fungicidal activity of the endophytic fungus Trichoderma taxi sp. nov. from Taxus mairei, see: Nielsen et al. (2005 ▶); Zhang et al. (2007 ▶). For the related Trichodermin structure, see: Chen et al. (2008 ▶). For the extinction correction, see: Larson (1970 ▶).

Experimental

Crystal data

C15H22O3 M = 250.34 Monoclinic, a = 6.8284 (2) Å b = 6.6209 (3) Å c = 14.7170 (6) Å β = 96.7507 (11)° V = 660.74 (4) Å3 Z = 2 Mo Kα radiation μ = 0.09 mm−1 T = 296 K 0.66 × 0.49 × 0.28 mm

Data collection

Rigaku R-AXIS RAPID IP diffractometer Absorption correction: multi-scan (ABSCOR; Higashi, 1995 ▶) T min = 0.934, T max = 0.976 6503 measured reflections 1634 independent reflections 1540 reflections with F 2 > 2σ(F 2) R int = 0.018

Refinement

R[F 2 > 2σ(F 2)] = 0.034 wR(F 2) = 0.095 S = 1.00 1634 reflections 164 parameters H-atom parameters constrained Δρmax = 0.17 e Å−3 Δρmin = −0.15 e Å−3 Data collection: PROCESS-AUTO (Rigaku, 1998 ▶); cell refinement: PROCESS-AUTO; data reduction: CrystalStructure (Rigaku/MSC, 2002 ▶); program(s) used to solve structure: SIR97 (Altomare et al., 1993 ▶); program(s) used to refine structure: CRYSTALS (Watkin et al., 1996 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809044080/si2217sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809044080/si2217Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H22O3F(000) = 272.00
Mr = 250.34Dx = 1.258 Mg m3
Monoclinic, P21Mo Kα radiation, λ = 0.71075 Å
Hall symbol: P 2ybCell parameters from 6124 reflections
a = 6.8284 (2) Åθ = 3.0–27.4°
b = 6.6209 (3) ŵ = 0.09 mm1
c = 14.7170 (6) ÅT = 296 K
β = 96.7507 (11)°Chunk, colorless
V = 660.74 (4) Å30.66 × 0.49 × 0.28 mm
Z = 2
Rigaku R-AXIS RAPID IP diffractometer1540 reflections with F2 > 2σ(F2)
Detector resolution: 10.00 pixels mm-1Rint = 0.018
ω scansθmax = 27.4°
Absorption correction: multi-scan (ABSCOR; Higashi, 1995)h = −7→8
Tmin = 0.934, Tmax = 0.976k = −8→8
6503 measured reflectionsl = −19→18
1634 independent reflections
Refinement on F2w = 1/[0.0012Fo2 + 1.5σ(Fo2)]/(4Fo2)
R[F2 > 2σ(F2)] = 0.034(Δ/σ)max < 0.001
wR(F2) = 0.095Δρmax = 0.17 e Å3
S = 1.00Δρmin = −0.15 e Å3
1634 reflectionsExtinction correction: Larson (1970), equation 22
164 parametersExtinction coefficient: 184 (28)
H-atom parameters constrained
Geometry. ENTER SPECIAL DETAILS OF THE MOLECULAR GEOMETRY
Refinement. Refinement using all reflections. The weighted R-factor (wR) and goodness of fit (S) are based on F2. R-factor (gt) are based on F. The threshold expression of F2 > 2.0 σ(F2) is used only for calculating R-factor (gt).
xyzUiso*/Ueq
O10.84609 (16)0.3577 (2)0.83213 (8)0.0329 (3)
O20.9112 (2)0.9341 (2)0.83678 (11)0.0535 (4)
O30.44991 (17)0.5728 (2)0.95141 (8)0.0428 (3)
C10.8680 (2)0.4910 (2)0.75578 (11)0.0295 (4)
C20.9296 (2)0.3595 (3)0.68075 (12)0.0389 (4)
C30.8120 (2)0.3061 (3)0.60656 (12)0.0423 (5)
C40.5978 (2)0.3670 (3)0.59348 (12)0.0484 (5)
C50.5275 (2)0.4606 (3)0.67912 (12)0.0394 (4)
C60.6784 (2)0.6115 (2)0.72646 (11)0.0307 (4)
C70.6045 (2)0.7082 (2)0.81427 (11)0.0298 (4)
C80.7735 (2)0.8181 (2)0.87935 (12)0.0374 (4)
C90.8824 (2)0.6492 (3)0.93698 (12)0.0398 (4)
C100.7723 (2)0.4555 (3)0.90883 (11)0.0326 (4)
C110.5685 (2)0.5348 (2)0.87747 (11)0.0294 (4)
C120.3896 (2)0.4194 (3)0.88380 (12)0.0418 (5)
C130.8819 (4)0.1859 (4)0.52998 (14)0.0596 (6)
C140.7229 (3)0.7762 (3)0.65783 (14)0.0505 (5)
C150.4273 (2)0.8481 (3)0.79217 (14)0.0485 (5)
H10.97480.58660.77450.035*
H21.05890.31250.68680.047*
H80.71090.90680.92070.045*
H100.77110.36290.96070.039*
H410.57870.46490.54420.058*
H420.51880.24790.57690.058*
H510.40410.53080.66170.047*
H520.50660.35340.72190.047*
H911.01830.64010.92410.048*
H920.87940.67491.00170.048*
H1210.39800.27780.90060.050*
H1220.27450.44110.83960.050*
H1310.80380.06560.52010.072*
H1321.01780.14970.54580.072*
H1330.86880.26560.47510.072*
H1410.76070.71390.60360.061*
H1420.82850.86020.68500.061*
H1430.60720.85720.64210.061*
H1510.33170.78390.74850.058*
H1520.46970.97230.76700.058*
H1530.36910.87600.84710.058*
H2010.87231.05390.82940.066*
U11U22U33U12U13U23
O10.0392 (5)0.0274 (6)0.0324 (5)0.0083 (5)0.0063 (4)−0.0003 (5)
O20.0587 (8)0.0287 (7)0.0781 (10)−0.0102 (7)0.0296 (7)−0.0093 (7)
O30.0493 (7)0.0455 (8)0.0377 (6)0.0024 (6)0.0226 (5)−0.0016 (6)
C10.0308 (7)0.0267 (9)0.0320 (7)−0.0024 (6)0.0076 (5)−0.0016 (6)
C20.0398 (8)0.0335 (10)0.0466 (9)−0.0012 (8)0.0179 (7)−0.0075 (8)
C30.0633 (10)0.0326 (10)0.0344 (9)−0.0079 (9)0.0207 (8)−0.0044 (8)
C40.0632 (11)0.0501 (13)0.0308 (8)−0.0053 (11)0.0004 (7)−0.0065 (9)
C50.0381 (7)0.0463 (12)0.0330 (8)0.0009 (8)0.0007 (6)0.0002 (9)
C60.0386 (7)0.0272 (9)0.0273 (7)0.0021 (7)0.0083 (5)0.0025 (6)
C70.0336 (7)0.0241 (8)0.0329 (8)0.0043 (6)0.0093 (5)0.0022 (7)
C80.0424 (8)0.0303 (10)0.0419 (9)−0.0012 (7)0.0153 (7)−0.0106 (8)
C90.0393 (8)0.0459 (11)0.0337 (8)0.0021 (8)0.0023 (6)−0.0101 (8)
C100.0383 (7)0.0342 (10)0.0254 (7)0.0076 (7)0.0049 (5)0.0043 (7)
C110.0343 (7)0.0293 (9)0.0261 (7)0.0030 (7)0.0103 (5)0.0001 (7)
C120.0393 (8)0.0427 (11)0.0455 (9)−0.0034 (8)0.0145 (7)0.0013 (9)
C130.0909 (15)0.0460 (13)0.0478 (11)−0.0127 (13)0.0322 (11)−0.0138 (11)
C140.0785 (13)0.0354 (11)0.0413 (10)0.0041 (10)0.0229 (9)0.0086 (9)
C150.0516 (9)0.0397 (12)0.0563 (11)0.0188 (10)0.0144 (8)0.0089 (10)
O1—C11.450 (2)C1—H10.980
O1—C101.443 (2)C2—H20.930
O2—C81.416 (2)C4—H410.970
O3—C111.453 (2)C4—H420.970
O3—C121.447 (2)C5—H510.970
C1—C21.504 (2)C5—H520.970
C1—C61.539 (2)C8—H80.980
C2—C31.325 (2)C9—H910.970
C3—C41.508 (2)C9—H920.970
C3—C131.503 (3)C10—H100.980
C4—C51.531 (2)C12—H1210.970
C5—C61.542 (2)C12—H1220.970
C6—C71.577 (2)C13—H1310.960
C6—C141.541 (2)C13—H1320.960
C7—C81.587 (2)C13—H1330.960
C7—C111.516 (2)C14—H1410.960
C7—C151.528 (2)C14—H1420.960
C8—C91.541 (2)C14—H1430.960
C9—C101.520 (2)C15—H1510.960
C10—C111.508 (2)C15—H1520.960
C11—C121.453 (2)C15—H1530.960
O2—H2010.840
C1—O1—C10114.24 (13)C3—C4—H42108.5
C11—O3—C1260.14 (11)C5—C4—H41108.5
O1—C1—C2106.26 (14)C5—C4—H42108.5
O1—C1—C6111.87 (12)H41—C4—H42109.5
C2—C1—C6113.14 (12)C4—C5—H51108.8
C1—C2—C3124.36 (16)C4—C5—H52108.8
C2—C3—C4121.26 (18)C6—C5—H51108.8
C2—C3—C13122.95 (18)C6—C5—H52108.8
C4—C3—C13115.78 (17)H51—C5—H52109.5
C3—C4—C5113.36 (15)O2—C8—H8108.1
C4—C5—C6112.11 (15)C7—C8—H8108.1
C1—C6—C5106.63 (14)C9—C8—H8108.1
C1—C6—C7108.69 (12)C8—C9—H91110.4
C1—C6—C14109.07 (15)C8—C9—H92110.4
C5—C6—C7111.85 (13)C10—C9—H91110.4
C5—C6—C14109.60 (14)C10—C9—H92110.4
C7—C6—C14110.88 (15)H91—C9—H92109.5
C6—C7—C8113.63 (13)O1—C10—H10111.4
C6—C7—C11106.61 (14)C9—C10—H10111.4
C6—C7—C15113.16 (13)C11—C10—H10111.4
C8—C7—C1197.80 (12)O3—C12—H121120.0
C8—C7—C15110.62 (15)O3—C12—H122120.0
C11—C7—C15114.07 (14)C11—C12—H121120.0
O2—C8—C7117.07 (15)C11—C12—H122120.0
O2—C8—C9109.54 (14)H121—C12—H122109.5
C7—C8—C9105.64 (15)C3—C13—H131109.5
C8—C9—C10105.72 (13)C3—C13—H132109.5
O1—C10—C9112.64 (14)C3—C13—H133109.5
O1—C10—C11108.15 (12)H131—C13—H132109.5
C9—C10—C11101.46 (15)H131—C13—H133109.5
O3—C11—C7118.26 (15)H132—C13—H133109.5
O3—C11—C10113.99 (12)C6—C14—H141109.5
O3—C11—C1259.75 (11)C6—C14—H142109.5
C7—C11—C10103.95 (13)C6—C14—H143109.5
C7—C11—C12129.49 (14)H141—C14—H142109.5
C10—C11—C12123.35 (16)H141—C14—H143109.5
O3—C12—C1160.11 (11)H142—C14—H143109.5
C8—O2—H201110.7C7—C15—H151109.5
O1—C1—H1108.5C7—C15—H152109.5
C2—C1—H1108.5C7—C15—H153109.5
C6—C1—H1108.5H151—C15—H152109.5
C1—C2—H2117.8H151—C15—H153109.5
C3—C2—H2117.8H152—C15—H153109.5
C3—C4—H41108.5
C1—O1—C10—C9−48.89 (16)C14—C6—C7—C11−179.10 (14)
C1—O1—C10—C1162.42 (17)C14—C6—C7—C1554.7 (2)
C10—O1—C1—C2−175.48 (11)C6—C7—C8—O240.8 (2)
C10—O1—C1—C6−51.55 (16)C6—C7—C8—C9−81.40 (17)
C12—O3—C11—C7121.49 (16)C6—C7—C11—O3−163.39 (12)
C12—O3—C11—C10−115.92 (18)C6—C7—C11—C1069.08 (15)
O1—C1—C2—C3105.4 (2)C6—C7—C11—C12−90.7 (2)
O1—C1—C6—C5−71.96 (16)C8—C7—C11—O379.03 (15)
O1—C1—C6—C748.78 (17)C8—C7—C11—C10−48.50 (15)
O1—C1—C6—C14169.78 (14)C8—C7—C11—C12151.67 (18)
C2—C1—C6—C548.01 (18)C11—C7—C8—O2152.82 (15)
C2—C1—C6—C7168.75 (14)C11—C7—C8—C930.61 (16)
C2—C1—C6—C14−70.25 (19)C15—C7—C8—O2−87.74 (19)
C6—C1—C2—C3−17.7 (2)C15—C7—C8—C9150.05 (15)
C1—C2—C3—C4−3.0 (3)C15—C7—C11—O3−37.8 (2)
C1—C2—C3—C13175.8 (2)C15—C7—C11—C10−165.28 (15)
C2—C3—C4—C5−9.8 (3)C15—C7—C11—C1234.9 (2)
C13—C3—C4—C5171.3 (2)O2—C8—C9—C10−129.73 (15)
C3—C4—C5—C643.1 (2)C7—C8—C9—C10−2.80 (18)
C4—C5—C6—C1−61.64 (19)C8—C9—C10—O188.78 (16)
C4—C5—C6—C7179.67 (15)C8—C9—C10—C11−26.62 (17)
C4—C5—C6—C1456.3 (2)O1—C10—C11—O3159.65 (14)
C1—C6—C7—C847.34 (19)O1—C10—C11—C7−70.22 (17)
C1—C6—C7—C11−59.22 (16)O1—C10—C11—C1291.20 (19)
C1—C6—C7—C15174.58 (15)C9—C10—C11—O3−81.67 (17)
C5—C6—C7—C8164.80 (14)C9—C10—C11—C748.45 (16)
C5—C6—C7—C1158.24 (16)C9—C10—C11—C12−150.13 (16)
C5—C6—C7—C15−68.0 (2)C7—C11—C12—O3−103.3 (2)
C14—C6—C7—C8−72.54 (18)C10—C11—C12—O3100.35 (17)
D—H···AD—HH···AD···AD—H···A
O2—H201···O1i0.842.022.839 (2)165
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O2—H201⋯O1i0.842.022.839 (2)165

Symmetry code: (i) .

  4 in total

1.  Trichothecene production by Trichoderma brevicompactum.

Authors:  Kristian Fog Nielsen; Tom Gräfenhan; Doustmorad Zafari; Ulf Thrane
Journal:  J Agric Food Chem       Date:  2005-10-19       Impact factor: 5.279

2.  Trichoderma taxi sp. nov., an endophytic fungus from Chinese yew Taxus mairei.

Authors:  Chu-Long Zhang; Shu-Peng Liu; Fu-Cheng Lin; Christian P Kubicek; Irina S Druzhinina
Journal:  FEMS Microbiol Lett       Date:  2007-02-16       Impact factor: 2.742

3.  Trichodermin (4β-acet-oxy-12,13-epoxy-trichothec-9-ene).

Authors:  Shao-Yuan Chen; Chu-Long Zhang; Yu-Zhe Chen; Fu-Cheng Lin
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-03-12

4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  4 in total
  3 in total

1.  Trichodermin (12,13-ep-oxy-trichethec-9-en-4β-yl 4-fluoro-benzoate).

Authors:  Xu-Hui Xu; Zong-Cheng Wang; Jing-Li Cheng; Yong Zhou; Jin-Hao Zhao
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-07-24

2.  Dihalogenated trichodermin (4β-acet-oxy-9,10-dibromo-12,13-epoxy-tri-chothec).

Authors:  Jin-Hao Zhao; Yong Zhou; Jian-Gong Zhang; Jing-Li Cheng; Fu-Cheng Lin
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-12-19

3.  8-{[(E)-3-(2-Chloro-phen-yl)acrylo-yloxy]imino}-12,13-ep-oxy-trichethec-9-en-4-yl (E)-3-(2-chloro-phen-yl)acrylate.

Authors:  Xiao-Jun Xu; Xiao-Liang Li; Jing-Li Cheng; Jin-Hao Zhao
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-10-05
  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.