Literature DB >> 21580058

1-(5-Carboxy-pent-yl)-2,3,3-trimethyl-3H-indol-1-ium bromide monohydrate.

Angela Winstead, Krystal Hart, Yousef M Hijji, Jerry P Jasinski, Ray J Butcher.   

Abstract

In the title compound, C(17)H(24)NO(2) (+)·Br(-)·H(2)O, the pentyl group chain in the cation extends nearly perpendicular [N-C-C-C = -64.4 (3)°] to the mean plane of the indole ring with the carboxyl end group twisted such that the dihedral angle between the mean planes of the indole and carb-oxy groups measures 43.2 (4)°. Both ions in the salt form inter-molecular hydrogen bonds (O-H⋯Br and O-H⋯O) with the water mol-ecule. As a result of the Br⋯H-O-H⋯Br inter-actions, a zigzag chain is formed in the c-axis direction. The crystal packing is influenced by the collective action of the O-H⋯O and O-H⋯Br inter-molecular inter-actions as well as π-π stacking inter-molecular inter-actions between adjacent benzyl rings of the indole group [centroid-centroid distance = 3.721 (13) Å] and inter-molecular C-H⋯π inter-actions between a methyl hydrogen and the benzyl ring of the indole group. The O-H⋯Br inter-actions form a distorted tetra-hedral array about the central Br atom. A MOPAC AM1 calculation provides support to these observations.

Entities:  

Year:  2009        PMID: 21580058      PMCID: PMC2980276          DOI: 10.1107/S1600536809049204

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For chemical and biological background, see: Zhu et al. (1994 ▶); Schwartz & Ulfelder (1992 ▶); Bengtsson et al. (2003 ▶); Hirons et al. (1994 ▶); Kurihara et al. (1977 ▶); Armitage & O’Brien (1992 ▶); Reers et al. (1991 ▶); Jung & Kim (2006 ▶); Menger & Pertusati (2008 ▶). A geometry optimized MOPAC AM1 computational calculation was performed using WebMO Pro (Schmidt & Polik, 2007 ▶).

Experimental

Crystal data

C17H24NO2Br−·H2O M = 372.30 Monoclinic, a = 14.4528 (3) Å b = 15.3367 (2) Å c = 8.0810 (2) Å β = 99.437 (2)° V = 1766.98 (6) Å3 Z = 4 Cu Kα radiation μ = 3.27 mm−1 T = 200 K 0.55 × 0.18 × 0.12 mm

Data collection

Oxford Diffraction Gemini R diffractometer Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2007 ▶) T min = 0.296, T max = 0.676 13155 measured reflections 3504 independent reflections 3049 reflections with I > 2σ(I) R int = 0.033

Refinement

R[F 2 > 2σ(F 2)] = 0.037 wR(F 2) = 0.098 S = 1.06 3504 reflections 209 parameters 3 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.52 e Å−3 Δρmin = −0.43 e Å−3 Data collection: CrysAlis Pro (Oxford Diffraction, 2007 ▶); cell refinement: CrysAlis Pro; data reduction: CrysAlis Pro; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809049204/fl2265sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809049204/fl2265Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C17H24NO2+·Br·H2OF(000) = 776
Mr = 372.30Dx = 1.399 Mg m3
Monoclinic, P21/cCu Kα radiation, λ = 1.54178 Å
Hall symbol: -P 2ybcCell parameters from 8515 reflections
a = 14.4528 (3) Åθ = 5.6–73.5°
b = 15.3367 (2) ŵ = 3.27 mm1
c = 8.0810 (2) ÅT = 200 K
β = 99.437 (2)°Needle, colorless
V = 1766.98 (6) Å30.55 × 0.18 × 0.12 mm
Z = 4
Oxford Diffraction Gemini R diffractometer3504 independent reflections
Radiation source: fine-focus sealed tube3049 reflections with I > 2σ(I)
graphiteRint = 0.033
Detector resolution: 10.5081 pixels mm-1θmax = 73.7°, θmin = 5.8°
φ and ω scansh = −17→15
Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2007)k = −18→19
Tmin = 0.296, Tmax = 0.676l = −10→8
13155 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.037Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.098H atoms treated by a mixture of independent and constrained refinement
S = 1.06w = 1/[σ2(Fo2) + (0.0518P)2 + 1.5238P] where P = (Fo2 + 2Fc2)/3
3504 reflections(Δ/σ)max = 0.001
209 parametersΔρmax = 0.52 e Å3
3 restraintsΔρmin = −0.43 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Br0.168343 (18)0.871933 (16)0.50535 (3)0.03689 (11)
O10.5587 (2)0.7918 (2)0.1347 (5)0.0893 (10)
O20.42824 (18)0.81569 (14)0.2331 (4)0.0661 (7)
H2O0.38000.78730.24480.079*
O1W0.28626 (17)0.7310 (2)0.3254 (3)0.0707 (8)
H1W10.254 (3)0.764 (3)0.372 (5)0.106*
H1W20.251 (3)0.714 (3)0.242 (4)0.106*
N10.79026 (13)0.52889 (12)0.5047 (2)0.0254 (4)
C10.76946 (16)0.56100 (15)0.6432 (3)0.0279 (5)
C20.68861 (18)0.53476 (18)0.7221 (3)0.0379 (6)
H2A0.65660.48530.66070.057*
H2B0.64490.58380.71920.057*
H2C0.71060.51780.83890.057*
C30.84000 (16)0.63015 (14)0.7139 (3)0.0268 (5)
C40.78975 (19)0.71914 (16)0.7114 (3)0.0367 (6)
H4A0.75790.73170.59720.055*
H4B0.83590.76490.74780.055*
H4C0.74350.71730.78750.055*
C50.88798 (19)0.60805 (17)0.8929 (3)0.0348 (5)
H5A0.91550.54960.89440.052*
H5B0.84160.60970.96870.052*
H5C0.93750.65080.92970.052*
C60.90648 (16)0.62789 (13)0.5885 (3)0.0252 (4)
C70.98805 (16)0.67357 (15)0.5803 (3)0.0301 (5)
H7A1.01180.71480.66430.036*
C81.03446 (17)0.65748 (16)0.4452 (3)0.0327 (5)
H8A1.09040.68860.43690.039*
C91.00061 (17)0.59686 (16)0.3225 (3)0.0318 (5)
H9A1.03380.58730.23190.038*
C100.91882 (16)0.54979 (15)0.3296 (3)0.0281 (5)
H10A0.89520.50780.24700.034*
C110.87436 (15)0.56811 (14)0.4644 (3)0.0246 (4)
C120.73635 (17)0.46508 (15)0.3907 (3)0.0320 (5)
H12A0.69400.43190.45220.038*
H12B0.78000.42320.35080.038*
C130.67861 (17)0.51091 (16)0.2403 (3)0.0339 (5)
H13A0.72150.54540.18230.041*
H13B0.64880.46610.16070.041*
C140.60247 (18)0.57112 (19)0.2847 (3)0.0391 (6)
H14A0.56310.53840.35270.047*
H14B0.63230.61990.35400.047*
C150.5405 (2)0.6079 (2)0.1308 (4)0.0553 (8)
H15A0.51070.55900.06170.066*
H15B0.58000.64030.06280.066*
C160.46391 (19)0.66849 (18)0.1732 (4)0.0430 (6)
H16A0.40670.66010.08880.052*
H16B0.44860.65160.28380.052*
C170.4896 (2)0.7628 (2)0.1783 (4)0.0492 (7)
U11U22U33U12U13U23
Br0.04080 (17)0.03133 (16)0.03975 (18)−0.00006 (10)0.01018 (12)0.00063 (10)
O10.0628 (16)0.0726 (18)0.136 (3)−0.0271 (14)0.0274 (17)−0.0028 (18)
O20.0607 (14)0.0372 (11)0.097 (2)0.0081 (10)0.0028 (13)−0.0153 (12)
O1W0.0458 (12)0.102 (2)0.0635 (16)0.0124 (13)0.0056 (11)−0.0374 (15)
N10.0266 (9)0.0221 (8)0.0263 (10)−0.0014 (7)0.0009 (7)0.0013 (7)
C10.0300 (11)0.0264 (11)0.0259 (11)0.0015 (9)0.0005 (9)0.0053 (9)
C20.0355 (13)0.0415 (14)0.0380 (14)−0.0016 (10)0.0105 (11)0.0069 (11)
C30.0325 (11)0.0237 (11)0.0238 (11)−0.0012 (8)0.0033 (9)−0.0004 (8)
C40.0450 (14)0.0296 (12)0.0366 (14)0.0056 (10)0.0100 (11)−0.0002 (10)
C50.0439 (14)0.0343 (12)0.0244 (12)−0.0008 (10)0.0004 (10)0.0014 (10)
C60.0317 (11)0.0205 (10)0.0225 (11)0.0018 (8)0.0015 (9)0.0015 (8)
C70.0334 (11)0.0232 (11)0.0319 (13)−0.0025 (9)0.0003 (9)0.0005 (9)
C80.0302 (11)0.0282 (11)0.0394 (14)−0.0014 (9)0.0051 (10)0.0082 (10)
C90.0348 (12)0.0313 (12)0.0306 (13)0.0075 (9)0.0089 (10)0.0065 (10)
C100.0347 (12)0.0244 (11)0.0239 (11)0.0050 (9)0.0010 (9)0.0006 (9)
C110.0275 (10)0.0210 (10)0.0243 (11)0.0008 (8)0.0015 (8)0.0045 (8)
C120.0327 (11)0.0234 (11)0.0374 (13)−0.0030 (9)−0.0020 (10)−0.0040 (10)
C130.0330 (12)0.0330 (12)0.0332 (13)0.0007 (9)−0.0018 (10)−0.0069 (10)
C140.0352 (13)0.0426 (14)0.0381 (14)0.0067 (11)0.0023 (11)−0.0017 (11)
C150.0538 (18)0.0570 (18)0.0493 (18)0.0244 (15)−0.0087 (14)−0.0133 (15)
C160.0363 (13)0.0373 (14)0.0526 (17)0.0073 (11)−0.0014 (12)−0.0026 (12)
C170.0405 (15)0.0418 (15)0.062 (2)−0.0031 (12)−0.0019 (13)−0.0028 (14)
O1—C171.198 (4)C7—C81.394 (4)
O2—C171.330 (4)C7—H7A0.9500
O2—H2O0.8400C8—C91.389 (4)
O1W—H1W10.812 (19)C8—H8A0.9500
O1W—H1W20.817 (19)C9—C101.394 (3)
N1—C11.302 (3)C9—H9A0.9500
N1—C111.440 (3)C10—C111.381 (3)
N1—C121.476 (3)C10—H10A0.9500
C1—C21.476 (3)C12—C131.528 (3)
C1—C31.516 (3)C12—H12A0.9900
C2—H2A0.9800C12—H12B0.9900
C2—H2B0.9800C13—C141.524 (3)
C2—H2C0.9800C13—H13A0.9900
C3—C61.507 (3)C13—H13B0.9900
C3—C51.536 (3)C14—C151.518 (4)
C3—C41.545 (3)C14—H14A0.9900
C4—H4A0.9800C14—H14B0.9900
C4—H4B0.9800C15—C161.526 (4)
C4—H4C0.9800C15—H15A0.9900
C5—H5A0.9800C15—H15B0.9900
C5—H5B0.9800C16—C171.493 (4)
C5—H5C0.9800C16—H16A0.9900
C6—C111.382 (3)C16—H16B0.9900
C6—C71.382 (3)
C17—O2—H2O109.5C8—C9—H9A119.4
H1W1—O1W—H1W2104 (3)C10—C9—H9A119.4
C1—N1—C11111.00 (19)C11—C10—C9115.8 (2)
C1—N1—C12127.9 (2)C11—C10—H10A122.1
C11—N1—C12120.96 (19)C9—C10—H10A122.1
N1—C1—C2125.4 (2)C10—C11—C6124.3 (2)
N1—C1—C3110.6 (2)C10—C11—N1127.7 (2)
C2—C1—C3124.0 (2)C6—C11—N1108.0 (2)
C1—C2—H2A109.5N1—C12—C13110.80 (19)
C1—C2—H2B109.5N1—C12—H12A109.5
H2A—C2—H2B109.5C13—C12—H12A109.5
C1—C2—H2C109.5N1—C12—H12B109.5
H2A—C2—H2C109.5C13—C12—H12B109.5
H2B—C2—H2C109.5H12A—C12—H12B108.1
C6—C3—C1101.18 (18)C14—C13—C12114.4 (2)
C6—C3—C5112.9 (2)C14—C13—H13A108.7
C1—C3—C5111.86 (19)C12—C13—H13A108.7
C6—C3—C4111.20 (19)C14—C13—H13B108.7
C1—C3—C4109.1 (2)C12—C13—H13B108.7
C5—C3—C4110.3 (2)H13A—C13—H13B107.6
C3—C4—H4A109.5C15—C14—C13112.6 (2)
C3—C4—H4B109.5C15—C14—H14A109.1
H4A—C4—H4B109.5C13—C14—H14A109.1
C3—C4—H4C109.5C15—C14—H14B109.1
H4A—C4—H4C109.5C13—C14—H14B109.1
H4B—C4—H4C109.5H14A—C14—H14B107.8
C3—C5—H5A109.5C14—C15—C16113.2 (3)
C3—C5—H5B109.5C14—C15—H15A108.9
H5A—C5—H5B109.5C16—C15—H15A108.9
C3—C5—H5C109.5C14—C15—H15B108.9
H5A—C5—H5C109.5C16—C15—H15B108.9
H5B—C5—H5C109.5H15A—C15—H15B107.7
C11—C6—C7119.3 (2)C17—C16—C15114.2 (3)
C11—C6—C3109.15 (19)C17—C16—H16A108.7
C7—C6—C3131.6 (2)C15—C16—H16A108.7
C6—C7—C8118.1 (2)C17—C16—H16B108.7
C6—C7—H7A120.9C15—C16—H16B108.7
C8—C7—H7A120.9H16A—C16—H16B107.6
C9—C8—C7121.3 (2)O1—C17—O2120.4 (3)
C9—C8—H8A119.4O1—C17—C16124.5 (3)
C7—C8—H8A119.4O2—C17—C16115.1 (3)
C8—C9—C10121.3 (2)
C11—N1—C1—C2−179.2 (2)C8—C9—C10—C110.5 (3)
C12—N1—C1—C24.5 (4)C9—C10—C11—C6−0.7 (3)
C11—N1—C1—C31.0 (2)C9—C10—C11—N1−179.0 (2)
C12—N1—C1—C3−175.3 (2)C7—C6—C11—C100.2 (3)
N1—C1—C3—C6−1.7 (2)C3—C6—C11—C10−180.0 (2)
C2—C1—C3—C6178.4 (2)C7—C6—C11—N1178.82 (19)
N1—C1—C3—C5−122.2 (2)C3—C6—C11—N1−1.4 (2)
C2—C1—C3—C558.0 (3)C1—N1—C11—C10178.8 (2)
N1—C1—C3—C4115.6 (2)C12—N1—C11—C10−4.6 (3)
C2—C1—C3—C4−64.3 (3)C1—N1—C11—C60.3 (2)
C1—C3—C6—C111.9 (2)C12—N1—C11—C6176.90 (19)
C5—C3—C6—C11121.6 (2)C1—N1—C12—C1399.2 (3)
C4—C3—C6—C11−113.9 (2)C11—N1—C12—C13−76.8 (3)
C1—C3—C6—C7−178.4 (2)N1—C12—C13—C14−64.4 (3)
C5—C3—C6—C7−58.7 (3)C12—C13—C14—C15−174.0 (2)
C4—C3—C6—C765.8 (3)C13—C14—C15—C16−179.9 (3)
C11—C6—C7—C80.4 (3)C14—C15—C16—C1794.4 (4)
C3—C6—C7—C8−179.3 (2)C15—C16—C17—O18.5 (5)
C6—C7—C8—C9−0.5 (4)C15—C16—C17—O2−172.8 (3)
C7—C8—C9—C100.0 (4)
D—H···AD—HH···AD···AD—H···A
O2—H2O···O1W0.841.822.637 (4)166
O1W—H1W1···Br0.81 (2)2.43 (2)3.240 (2)175 (5)
O1W—H1W2···Bri0.82 (2)2.47 (2)3.262 (3)165 (5)
C4—H4B···Cg2ii0.992.883.828 (3)162
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O2—H2O⋯O1W0.841.822.637 (4)166
O1W—H1W1⋯Br0.812 (19)2.431 (19)3.240 (2)175 (5)
O1W—H1W2⋯Bri0.817 (19)2.47 (2)3.262 (3)165 (5)
C4—H4BCg2i20.992.883.828 (3)162

Symmetry code: (i) ; (ii) . Cg2 is the centroid of the C6–C11 ring.

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