Literature DB >> 21580013

(E)-N'-Benzyl-idene-5-methyl-isoxazole-4-carbohydrazide.

Yan-Xian Jin1, Wen-Ping Jia, Jun-Yong Wu, Hua Yan.   

Abstract

The mol-ecule of the title compound, C(12)H(11)N(3)O(2), is approximately planar with an r.m.s. deviation of 0.0814 Å from the plane through all the non-H atoms. The dihedral angle formed by the benzene and isoxazole rings is 6.88 (16)°. The mol-ecular conformation is stabilized by an intra-molecular C-H⋯N hydrogen bond, forming an S(6) ring, and the mol-ecule displays an E configuration with respect to the C=N double bond. In the crystal structure, inter-molecular N-H⋯O hydrogen bonds form centrosymmetric dimers which are further linked by weak C-H⋯N inter-actions augmented by very weak C-H⋯π contacts, forming layers parallel to (120).

Entities:  

Year:  2009        PMID: 21580013      PMCID: PMC2980173          DOI: 10.1107/S1600536809052969

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity and coordination ability of hydrazone compounds, see: Molina et al. (1994 ▶); Khattab (2005 ▶); Reiter et al. (1985 ▶). For the biological properties of isoxazole derivatives, see: Stevens & Albizati (1984 ▶). For related structures, see: Fun et al. (2008 ▶); Wei et al. (2009 ▶); Khaledi et al. (2008 ▶). For reference bond-length parameters, see: Allen et al. (1987 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C12H11N3O2 M = 229.24 Triclinic, a = 6.6562 (6) Å b = 7.4874 (9) Å c = 11.3051 (11) Å α = 87.319 (8)° β = 84.640 (7)° γ = 87.878 (8)° V = 560.04 (10) Å3 Z = 2 Mo Kα radiation μ = 0.10 mm−1 T = 293 K 0.22 × 0.19 × 0.08 mm

Data collection

Bruker APEXII area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2004 ▶) T min = 0.979, T max = 0.992 6763 measured reflections 1936 independent reflections 1219 reflections with I > 2σ(I) R int = 0.040

Refinement

R[F 2 > 2σ(F 2)] = 0.095 wR(F 2) = 0.302 S = 1.10 1936 reflections 159 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.53 e Å−3 Δρmin = −0.34 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809052969/sj2706sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809052969/sj2706Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H11N3O2Z = 2
Mr = 229.24F(000) = 240
Triclinic, P1Dx = 1.359 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 6.6562 (6) ÅCell parameters from 1711 reflections
b = 7.4874 (9) Åθ = 2.7–23.4°
c = 11.3051 (11) ŵ = 0.10 mm1
α = 87.319 (8)°T = 293 K
β = 84.640 (7)°Block, colourless
γ = 87.878 (8)°0.22 × 0.19 × 0.08 mm
V = 560.04 (10) Å3
Bruker APEXII area-detector diffractometer1936 independent reflections
Radiation source: fine-focus sealed tube1219 reflections with I > 2σ(I)
graphiteRint = 0.040
φ and ω scansθmax = 25.0°, θmin = 1.8°
Absorption correction: multi-scan (SADABS; Bruker, 2004)h = −7→7
Tmin = 0.979, Tmax = 0.992k = −8→8
6763 measured reflectionsl = −13→13
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.095Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.302H atoms treated by a mixture of independent and constrained refinement
S = 1.10w = 1/[σ2(Fo2) + (0.2P)2] where P = (Fo2 + 2Fc2)/3
1936 reflections(Δ/σ)max = 0.004
159 parametersΔρmax = 0.53 e Å3
1 restraintΔρmin = −0.33 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.1634 (6)0.4088 (7)0.0931 (4)0.0719 (13)
H1A0.14340.53640.09320.108*
H1B0.04350.35280.12820.108*
H1C0.19220.37260.01280.108*
C20.3348 (5)0.3544 (5)0.1625 (3)0.0564 (11)
C30.5697 (5)0.2840 (6)0.2794 (3)0.0617 (11)
H30.63440.26290.34840.074*
C40.3642 (5)0.3410 (5)0.2793 (3)0.0504 (10)
C50.2072 (5)0.3862 (5)0.3748 (3)0.0522 (10)
C60.4198 (6)0.2675 (5)0.6388 (3)0.0569 (10)
H60.30920.30720.68820.068*
C70.5963 (6)0.1885 (5)0.6923 (3)0.0535 (10)
C80.7688 (6)0.1292 (6)0.6238 (4)0.0636 (11)
H80.77270.13740.54130.076*
C90.9325 (6)0.0591 (6)0.6767 (4)0.0726 (13)
H91.04660.02020.62990.087*
C100.9299 (7)0.0456 (6)0.7985 (4)0.0741 (13)
H101.0417−0.00170.83420.089*
C110.7604 (7)0.1027 (6)0.8669 (4)0.0785 (14)
H110.75690.09340.94930.094*
C120.5962 (7)0.1736 (6)0.8140 (4)0.0684 (12)
H120.48260.21220.86130.082*
H20.150 (5)0.408 (5)0.545 (3)0.075 (12)*
N10.6576 (5)0.2644 (5)0.1742 (3)0.0742 (12)
N20.2397 (4)0.3615 (4)0.4894 (3)0.0578 (9)
N30.4137 (5)0.2831 (4)0.5270 (3)0.0546 (9)
O10.5060 (4)0.3099 (4)0.0977 (2)0.0689 (10)
O20.0417 (4)0.4503 (4)0.3494 (2)0.0672 (9)
U11U22U33U12U13U23
C10.052 (2)0.111 (3)0.051 (2)0.007 (2)−0.0067 (19)0.012 (2)
C20.039 (2)0.072 (2)0.054 (2)0.0057 (17)0.0052 (16)0.0055 (18)
C30.041 (2)0.095 (3)0.046 (2)0.0154 (19)0.0029 (16)−0.0016 (19)
C40.0349 (19)0.065 (2)0.049 (2)0.0093 (15)0.0018 (15)0.0009 (16)
C50.037 (2)0.068 (2)0.051 (2)0.0094 (16)0.0003 (15)−0.0050 (17)
C60.045 (2)0.072 (2)0.051 (2)0.0075 (17)0.0048 (17)−0.0029 (17)
C70.050 (2)0.062 (2)0.047 (2)0.0037 (17)0.0017 (16)−0.0022 (16)
C80.054 (2)0.084 (3)0.051 (2)0.010 (2)0.0017 (18)−0.0024 (19)
C90.053 (2)0.086 (3)0.077 (3)0.017 (2)−0.002 (2)−0.003 (2)
C100.066 (3)0.080 (3)0.078 (3)0.015 (2)−0.021 (2)0.004 (2)
C110.078 (3)0.099 (3)0.057 (3)0.020 (3)−0.011 (2)0.002 (2)
C120.065 (3)0.087 (3)0.052 (2)0.016 (2)0.0003 (19)−0.004 (2)
N10.0411 (19)0.121 (3)0.057 (2)0.0189 (18)0.0007 (15)0.0025 (19)
N20.0372 (17)0.087 (2)0.0468 (19)0.0153 (15)0.0002 (13)−0.0059 (16)
N30.0408 (17)0.073 (2)0.0486 (19)0.0090 (14)−0.0024 (13)−0.0020 (14)
O10.0457 (16)0.113 (2)0.0448 (16)0.0136 (14)0.0042 (12)0.0022 (14)
O20.0419 (16)0.104 (2)0.0547 (17)0.0250 (14)−0.0063 (12)−0.0128 (14)
C1—C21.478 (5)C7—C121.375 (5)
C1—H1A0.9600C7—C81.394 (5)
C1—H1B0.9600C8—C91.368 (5)
C1—H1C0.9600C8—H80.9300
C2—O11.337 (4)C9—C101.374 (6)
C2—C41.352 (5)C9—H90.9300
C3—N11.288 (5)C10—C111.373 (6)
C3—C41.417 (5)C10—H100.9300
C3—H30.9300C11—C121.373 (6)
C4—C51.473 (5)C11—H110.9300
C5—O21.239 (4)C12—H120.9300
C5—N21.336 (5)N1—O11.412 (4)
C6—N31.269 (5)N2—N31.373 (4)
C6—C71.464 (5)N2—H20.902 (10)
C6—H60.9300
C2—C1—H1A109.5C8—C7—C6122.2 (3)
C2—C1—H1B109.5C9—C8—C7120.7 (4)
H1A—C1—H1B109.5C9—C8—H8119.7
C2—C1—H1C109.5C7—C8—H8119.7
H1A—C1—H1C109.5C8—C9—C10120.6 (4)
H1B—C1—H1C109.5C8—C9—H9119.7
O1—C2—C4109.7 (3)C10—C9—H9119.7
O1—C2—C1115.1 (3)C11—C10—C9119.2 (4)
C4—C2—C1135.3 (4)C11—C10—H10120.4
N1—C3—C4113.2 (3)C9—C10—H10120.4
N1—C3—H3123.4C12—C11—C10120.3 (4)
C4—C3—H3123.4C12—C11—H11119.9
C2—C4—C3103.5 (3)C10—C11—H11119.9
C2—C4—C5123.5 (3)C11—C12—C7121.3 (4)
C3—C4—C5133.0 (3)C11—C12—H12119.4
O2—C5—N2118.7 (3)C7—C12—H12119.4
O2—C5—C4119.9 (3)C3—N1—O1104.4 (3)
N2—C5—C4121.4 (3)C5—N2—N3123.3 (3)
N3—C6—C7121.8 (3)C5—N2—H2119 (3)
N3—C6—H6119.1N3—N2—H2118 (3)
C7—C6—H6119.1C6—N3—N2115.5 (3)
C12—C7—C8117.9 (4)C2—O1—N1109.3 (3)
C12—C7—C6119.8 (4)
O1—C2—C4—C30.0 (4)C7—C8—C9—C100.0 (7)
C1—C2—C4—C3−178.5 (5)C8—C9—C10—C110.3 (7)
O1—C2—C4—C5178.0 (3)C9—C10—C11—C12−0.4 (8)
C1—C2—C4—C5−0.5 (8)C10—C11—C12—C70.3 (8)
N1—C3—C4—C20.0 (5)C8—C7—C12—C110.1 (7)
N1—C3—C4—C5−177.7 (4)C6—C7—C12—C11−179.0 (4)
C2—C4—C5—O2−4.5 (6)C4—C3—N1—O10.0 (5)
C3—C4—C5—O2172.8 (4)O2—C5—N2—N3176.6 (3)
C2—C4—C5—N2176.3 (4)C4—C5—N2—N3−4.2 (6)
C3—C4—C5—N2−6.4 (7)C7—C6—N3—N2−179.3 (3)
N3—C6—C7—C12−179.8 (4)C5—N2—N3—C6−179.1 (4)
N3—C6—C7—C81.2 (6)C4—C2—O1—N10.0 (5)
C12—C7—C8—C9−0.2 (7)C1—C2—O1—N1178.8 (3)
C6—C7—C8—C9178.8 (4)C3—N1—O1—C20.0 (5)
Cg1 is the centroid of the C7–C12 ring.
D—H···AD—HH···AD···AD—H···A
C3—H3···N30.932.392.893 (5)114
N2—H2···O2i0.90 (1)1.98 (1)2.867 (4)170 (4)
C1—H1B···N1ii0.962.673.598 (6)162
C1—H1A···Cg1iii0.963.354.136 (7)140
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C3—H3⋯N30.932.392.893 (5)114
N2—H2⋯O2i0.90 (1)1.98 (1)2.867 (4)170 (4)
C1—H1B⋯N1ii0.962.673.598 (6)162
C1—H1ACg1iii0.963.354.136 (7)140

Symmetry codes: (i) ; (ii) ; (iii) . Cg1 is the centroid of the C7–C12 ring.

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