| Literature DB >> 21580013 |
Yan-Xian Jin1, Wen-Ping Jia, Jun-Yong Wu, Hua Yan.
Abstract
The mol-ecule of the title compound, C(12)H(11)N(3)O(2), is approximately planar with an r.m.s. deviation of 0.0814 Å from the plane through all the non-H atoms. The dihedral angle formed by the benzene and isoxazole rings is 6.88 (16)°. The mol-ecular conformation is stabilized by an intra-molecular C-H⋯N hydrogen bond, forming an S(6) ring, and the mol-ecule displays an E configuration with respect to the C=N double bond. In the crystal structure, inter-molecular N-H⋯O hydrogen bonds form centrosymmetric dimers which are further linked by weak C-H⋯N inter-actions augmented by very weak C-H⋯π contacts, forming layers parallel to (120).Entities:
Year: 2009 PMID: 21580013 PMCID: PMC2980173 DOI: 10.1107/S1600536809052969
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C12H11N3O2 | |
| Triclinic, | |
| Hall symbol: -P 1 | Mo |
| Cell parameters from 1711 reflections | |
| θ = 2.7–23.4° | |
| µ = 0.10 mm−1 | |
| α = 87.319 (8)° | |
| β = 84.640 (7)° | Block, colourless |
| γ = 87.878 (8)° | 0.22 × 0.19 × 0.08 mm |
| Bruker APEXII area-detector diffractometer | 1936 independent reflections |
| Radiation source: fine-focus sealed tube | 1219 reflections with |
| graphite | |
| φ and ω scans | θmax = 25.0°, θmin = 1.8° |
| Absorption correction: multi-scan ( | |
| 6763 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 1936 reflections | (Δ/σ)max = 0.004 |
| 159 parameters | Δρmax = 0.53 e Å−3 |
| 1 restraint | Δρmin = −0.33 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| C1 | 0.1634 (6) | 0.4088 (7) | 0.0931 (4) | 0.0719 (13) | |
| H1A | 0.1434 | 0.5364 | 0.0932 | 0.108* | |
| H1B | 0.0435 | 0.3528 | 0.1282 | 0.108* | |
| H1C | 0.1922 | 0.3726 | 0.0128 | 0.108* | |
| C2 | 0.3348 (5) | 0.3544 (5) | 0.1625 (3) | 0.0564 (11) | |
| C3 | 0.5697 (5) | 0.2840 (6) | 0.2794 (3) | 0.0617 (11) | |
| H3 | 0.6344 | 0.2629 | 0.3484 | 0.074* | |
| C4 | 0.3642 (5) | 0.3410 (5) | 0.2793 (3) | 0.0504 (10) | |
| C5 | 0.2072 (5) | 0.3862 (5) | 0.3748 (3) | 0.0522 (10) | |
| C6 | 0.4198 (6) | 0.2675 (5) | 0.6388 (3) | 0.0569 (10) | |
| H6 | 0.3092 | 0.3072 | 0.6882 | 0.068* | |
| C7 | 0.5963 (6) | 0.1885 (5) | 0.6923 (3) | 0.0535 (10) | |
| C8 | 0.7688 (6) | 0.1292 (6) | 0.6238 (4) | 0.0636 (11) | |
| H8 | 0.7727 | 0.1374 | 0.5413 | 0.076* | |
| C9 | 0.9325 (6) | 0.0591 (6) | 0.6767 (4) | 0.0726 (13) | |
| H9 | 1.0466 | 0.0202 | 0.6299 | 0.087* | |
| C10 | 0.9299 (7) | 0.0456 (6) | 0.7985 (4) | 0.0741 (13) | |
| H10 | 1.0417 | −0.0017 | 0.8342 | 0.089* | |
| C11 | 0.7604 (7) | 0.1027 (6) | 0.8669 (4) | 0.0785 (14) | |
| H11 | 0.7569 | 0.0934 | 0.9493 | 0.094* | |
| C12 | 0.5962 (7) | 0.1736 (6) | 0.8140 (4) | 0.0684 (12) | |
| H12 | 0.4826 | 0.2122 | 0.8613 | 0.082* | |
| H2 | 0.150 (5) | 0.408 (5) | 0.545 (3) | 0.075 (12)* | |
| N1 | 0.6576 (5) | 0.2644 (5) | 0.1742 (3) | 0.0742 (12) | |
| N2 | 0.2397 (4) | 0.3615 (4) | 0.4894 (3) | 0.0578 (9) | |
| N3 | 0.4137 (5) | 0.2831 (4) | 0.5270 (3) | 0.0546 (9) | |
| O1 | 0.5060 (4) | 0.3099 (4) | 0.0977 (2) | 0.0689 (10) | |
| O2 | 0.0417 (4) | 0.4503 (4) | 0.3494 (2) | 0.0672 (9) |
| C1 | 0.052 (2) | 0.111 (3) | 0.051 (2) | 0.007 (2) | −0.0067 (19) | 0.012 (2) |
| C2 | 0.039 (2) | 0.072 (2) | 0.054 (2) | 0.0057 (17) | 0.0052 (16) | 0.0055 (18) |
| C3 | 0.041 (2) | 0.095 (3) | 0.046 (2) | 0.0154 (19) | 0.0029 (16) | −0.0016 (19) |
| C4 | 0.0349 (19) | 0.065 (2) | 0.049 (2) | 0.0093 (15) | 0.0018 (15) | 0.0009 (16) |
| C5 | 0.037 (2) | 0.068 (2) | 0.051 (2) | 0.0094 (16) | 0.0003 (15) | −0.0050 (17) |
| C6 | 0.045 (2) | 0.072 (2) | 0.051 (2) | 0.0075 (17) | 0.0048 (17) | −0.0029 (17) |
| C7 | 0.050 (2) | 0.062 (2) | 0.047 (2) | 0.0037 (17) | 0.0017 (16) | −0.0022 (16) |
| C8 | 0.054 (2) | 0.084 (3) | 0.051 (2) | 0.010 (2) | 0.0017 (18) | −0.0024 (19) |
| C9 | 0.053 (2) | 0.086 (3) | 0.077 (3) | 0.017 (2) | −0.002 (2) | −0.003 (2) |
| C10 | 0.066 (3) | 0.080 (3) | 0.078 (3) | 0.015 (2) | −0.021 (2) | 0.004 (2) |
| C11 | 0.078 (3) | 0.099 (3) | 0.057 (3) | 0.020 (3) | −0.011 (2) | 0.002 (2) |
| C12 | 0.065 (3) | 0.087 (3) | 0.052 (2) | 0.016 (2) | 0.0003 (19) | −0.004 (2) |
| N1 | 0.0411 (19) | 0.121 (3) | 0.057 (2) | 0.0189 (18) | 0.0007 (15) | 0.0025 (19) |
| N2 | 0.0372 (17) | 0.087 (2) | 0.0468 (19) | 0.0153 (15) | 0.0002 (13) | −0.0059 (16) |
| N3 | 0.0408 (17) | 0.073 (2) | 0.0486 (19) | 0.0090 (14) | −0.0024 (13) | −0.0020 (14) |
| O1 | 0.0457 (16) | 0.113 (2) | 0.0448 (16) | 0.0136 (14) | 0.0042 (12) | 0.0022 (14) |
| O2 | 0.0419 (16) | 0.104 (2) | 0.0547 (17) | 0.0250 (14) | −0.0063 (12) | −0.0128 (14) |
| C1—C2 | 1.478 (5) | C7—C12 | 1.375 (5) |
| C1—H1A | 0.9600 | C7—C8 | 1.394 (5) |
| C1—H1B | 0.9600 | C8—C9 | 1.368 (5) |
| C1—H1C | 0.9600 | C8—H8 | 0.9300 |
| C2—O1 | 1.337 (4) | C9—C10 | 1.374 (6) |
| C2—C4 | 1.352 (5) | C9—H9 | 0.9300 |
| C3—N1 | 1.288 (5) | C10—C11 | 1.373 (6) |
| C3—C4 | 1.417 (5) | C10—H10 | 0.9300 |
| C3—H3 | 0.9300 | C11—C12 | 1.373 (6) |
| C4—C5 | 1.473 (5) | C11—H11 | 0.9300 |
| C5—O2 | 1.239 (4) | C12—H12 | 0.9300 |
| C5—N2 | 1.336 (5) | N1—O1 | 1.412 (4) |
| C6—N3 | 1.269 (5) | N2—N3 | 1.373 (4) |
| C6—C7 | 1.464 (5) | N2—H2 | 0.902 (10) |
| C6—H6 | 0.9300 | ||
| C2—C1—H1A | 109.5 | C8—C7—C6 | 122.2 (3) |
| C2—C1—H1B | 109.5 | C9—C8—C7 | 120.7 (4) |
| H1A—C1—H1B | 109.5 | C9—C8—H8 | 119.7 |
| C2—C1—H1C | 109.5 | C7—C8—H8 | 119.7 |
| H1A—C1—H1C | 109.5 | C8—C9—C10 | 120.6 (4) |
| H1B—C1—H1C | 109.5 | C8—C9—H9 | 119.7 |
| O1—C2—C4 | 109.7 (3) | C10—C9—H9 | 119.7 |
| O1—C2—C1 | 115.1 (3) | C11—C10—C9 | 119.2 (4) |
| C4—C2—C1 | 135.3 (4) | C11—C10—H10 | 120.4 |
| N1—C3—C4 | 113.2 (3) | C9—C10—H10 | 120.4 |
| N1—C3—H3 | 123.4 | C12—C11—C10 | 120.3 (4) |
| C4—C3—H3 | 123.4 | C12—C11—H11 | 119.9 |
| C2—C4—C3 | 103.5 (3) | C10—C11—H11 | 119.9 |
| C2—C4—C5 | 123.5 (3) | C11—C12—C7 | 121.3 (4) |
| C3—C4—C5 | 133.0 (3) | C11—C12—H12 | 119.4 |
| O2—C5—N2 | 118.7 (3) | C7—C12—H12 | 119.4 |
| O2—C5—C4 | 119.9 (3) | C3—N1—O1 | 104.4 (3) |
| N2—C5—C4 | 121.4 (3) | C5—N2—N3 | 123.3 (3) |
| N3—C6—C7 | 121.8 (3) | C5—N2—H2 | 119 (3) |
| N3—C6—H6 | 119.1 | N3—N2—H2 | 118 (3) |
| C7—C6—H6 | 119.1 | C6—N3—N2 | 115.5 (3) |
| C12—C7—C8 | 117.9 (4) | C2—O1—N1 | 109.3 (3) |
| C12—C7—C6 | 119.8 (4) | ||
| O1—C2—C4—C3 | 0.0 (4) | C7—C8—C9—C10 | 0.0 (7) |
| C1—C2—C4—C3 | −178.5 (5) | C8—C9—C10—C11 | 0.3 (7) |
| O1—C2—C4—C5 | 178.0 (3) | C9—C10—C11—C12 | −0.4 (8) |
| C1—C2—C4—C5 | −0.5 (8) | C10—C11—C12—C7 | 0.3 (8) |
| N1—C3—C4—C2 | 0.0 (5) | C8—C7—C12—C11 | 0.1 (7) |
| N1—C3—C4—C5 | −177.7 (4) | C6—C7—C12—C11 | −179.0 (4) |
| C2—C4—C5—O2 | −4.5 (6) | C4—C3—N1—O1 | 0.0 (5) |
| C3—C4—C5—O2 | 172.8 (4) | O2—C5—N2—N3 | 176.6 (3) |
| C2—C4—C5—N2 | 176.3 (4) | C4—C5—N2—N3 | −4.2 (6) |
| C3—C4—C5—N2 | −6.4 (7) | C7—C6—N3—N2 | −179.3 (3) |
| N3—C6—C7—C12 | −179.8 (4) | C5—N2—N3—C6 | −179.1 (4) |
| N3—C6—C7—C8 | 1.2 (6) | C4—C2—O1—N1 | 0.0 (5) |
| C12—C7—C8—C9 | −0.2 (7) | C1—C2—O1—N1 | 178.8 (3) |
| C6—C7—C8—C9 | 178.8 (4) | C3—N1—O1—C2 | 0.0 (5) |
| Cg1 is the centroid of the C7–C12 ring. |
| H··· | ||||
| C3—H3···N3 | 0.93 | 2.39 | 2.893 (5) | 114 |
| N2—H2···O2i | 0.90 (1) | 1.98 (1) | 2.867 (4) | 170 (4) |
| C1—H1B···N1ii | 0.96 | 2.67 | 3.598 (6) | 162 |
| C1—H1A···Cg1iii | 0.96 | 3.35 | 4.136 (7) | 140 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| C3—H3⋯N3 | 0.93 | 2.39 | 2.893 (5) | 114 |
| N2—H2⋯O2i | 0.90 (1) | 1.98 (1) | 2.867 (4) | 170 (4) |
| C1—H1 | 0.96 | 2.67 | 3.598 (6) | 162 |
| C1—H1 | 0.96 | 3.35 | 4.136 (7) | 140 |
Symmetry codes: (i) ; (ii) ; (iii) . Cg1 is the centroid of the C7–C12 ring.