Literature DB >> 21579885

4-[4-(3-Methoxy-benzamido)phen-oxy]-N-methyl-picolinamide.

Na-Na Meng, Ting-Ting Huang, De-Kuan Li, Wen-Xin Zhang, Luo-Ting Yu.   

Abstract

In the title compound, C(21)H(19)N(3)O(4), the central benzene ring makes dihedral angles of 78.54 (6) and 75.30 (6)° with the pyridine and 3-methoxy-phenyl rings, respectively. An intra-molecular N-H⋯N interaction occurs, generating an S(?). The crystal packing shows inter-molecular N-H⋯O hydrogen-bonding inter-actions between the N-H groups and the O atoms of the 3-methoxy-phenyl ring and the carbonyl groups of the amide functions. Inter-molecular C-H⋯O inter-actions are also present.

Entities:  

Year:  2010        PMID: 21579885      PMCID: PMC2979880          DOI: 10.1107/S1600536809055688

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related compounds and their biological activity, see: Khire et al. (2004 ▶); Dominguez et al. (2007 ▶).

Experimental

Crystal data

C21H19N3O4 M = 377.39 Triclinic, a = 5.0915 (10) Å b = 8.3251 (17) Å c = 11.611 (2) Å α = 71.29 (3)° β = 87.74 (3)° γ = 76.10 (3)° V = 452.14 (16) Å3 Z = 1 Mo Kα radiation μ = 0.10 mm−1 T = 113 K 0.34 × 0.29 × 0.19 mm

Data collection

Rigaku Saturn CCD area-detector diffractometer Absorption correction: multi-scan (ABSCOR; Higashi, 1995 ▶) T min = 0.968, T max = 0.982 3733 measured reflections 2108 independent reflections 1811 reflections with I > 2σ(I) R int = 0.026

Refinement

R[F 2 > 2σ(F 2)] = 0.035 wR(F 2) = 0.085 S = 1.10 2108 reflections 263 parameters 3 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.22 e Å−3 Δρmin = −0.24 e Å−3 Data collection: CrystalClear (Rigaku/MSC, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEPIII (Burnett & Johnson, 1996 ▶); software used to prepare material for publication: PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809055688/om2308sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809055688/om2308Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C21H19N3O4Z = 1
Mr = 377.39F(000) = 198
Triclinic, P1Dx = 1.386 Mg m3
a = 5.0915 (10) ÅMo Kα radiation, λ = 0.71073 Å
b = 8.3251 (17) ÅCell parameters from 1652 reflections
c = 11.611 (2) Åθ = 2.7–27.8°
α = 71.29 (3)°µ = 0.10 mm1
β = 87.74 (3)°T = 113 K
γ = 76.10 (3)°Block, colourless
V = 452.14 (16) Å30.34 × 0.29 × 0.19 mm
Rigaku Saturn CCD area-detector diffractometer2108 independent reflections
Radiation source: rotating anode1811 reflections with I > 2σ(I)
confocalRint = 0.026
Detector resolution: 7.31 pixels mm-1θmax = 27.8°, θmin = 2.7°
ω and φ scansh = −6→4
Absorption correction: multi-scan (ABSCOR; Higashi, 1995)k = −10→10
Tmin = 0.968, Tmax = 0.982l = −14→15
3733 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.035Hydrogen site location: mixed
wR(F2) = 0.085H atoms treated by a mixture of independent and constrained refinement
S = 1.10w = 1/[σ2(Fo2) + (0.0481P)2] where P = (Fo2 + 2Fc2)/3
2108 reflections(Δ/σ)max < 0.001
263 parametersΔρmax = 0.22 e Å3
3 restraintsΔρmin = −0.24 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O1−0.3679 (3)1.5504 (2)0.23318 (15)0.0212 (4)
O2−0.1469 (3)0.9491 (2)0.56055 (17)0.0249 (4)
O30.4394 (3)0.1895 (2)0.81518 (15)0.0220 (4)
O41.1345 (3)0.2263 (2)1.10678 (16)0.0230 (4)
N10.3007 (3)0.9089 (2)0.60459 (17)0.0154 (4)
H1N0.443 (6)0.954 (4)0.579 (3)0.031 (8)*
N21.0377 (4)−0.1617 (2)1.06587 (18)0.0197 (4)
N31.3326 (4)−0.0601 (3)1.20340 (18)0.0202 (4)
H3N1.353 (6)−0.166 (4)1.208 (3)0.025 (7)*
C10.0404 (4)1.1969 (3)0.48677 (19)0.0138 (4)
C2−0.1555 (4)1.2811 (3)0.3920 (2)0.0157 (4)
H2−0.26831.21790.37130.019*
C3−0.1849 (4)1.4569 (3)0.3282 (2)0.0166 (5)
C4−0.0230 (4)1.5503 (3)0.3610 (2)0.0186 (5)
H4−0.04411.67110.31810.022*
C50.1675 (4)1.4670 (3)0.4559 (2)0.0196 (5)
H50.27541.53160.47840.024*
C60.2036 (4)1.2891 (3)0.5190 (2)0.0167 (5)
H60.33771.23180.58300.020*
C7−0.4855 (5)1.4516 (3)0.1769 (2)0.0240 (5)
H7A−0.60351.39020.23400.036*
H7B−0.34101.36630.15490.036*
H7C−0.59191.53100.10340.036*
C80.0553 (4)1.0091 (3)0.5533 (2)0.0163 (4)
C90.3486 (4)0.7259 (3)0.66625 (19)0.0145 (4)
C100.5761 (4)0.6131 (3)0.6406 (2)0.0162 (4)
H100.70460.65890.58650.019*
C110.6152 (4)0.4336 (3)0.6942 (2)0.0190 (5)
H110.76890.35600.67630.023*
C120.4271 (4)0.3690 (3)0.7740 (2)0.0174 (5)
C130.2105 (4)0.4795 (3)0.8055 (2)0.0213 (5)
H130.08920.43360.86400.026*
C140.1710 (4)0.6586 (3)0.7512 (2)0.0204 (5)
H140.02150.73560.77230.025*
C150.6403 (4)0.0792 (3)0.8978 (2)0.0169 (5)
C160.6760 (5)−0.0977 (3)0.9182 (2)0.0194 (5)
H160.5661−0.13940.87570.023*
C170.8763 (5)−0.2126 (3)1.0024 (2)0.0210 (5)
H170.9012−0.33411.01610.025*
C180.9936 (4)0.0107 (3)1.0450 (2)0.0163 (4)
C190.8000 (4)0.1369 (3)0.9625 (2)0.0161 (4)
H190.77770.25780.95090.019*
C201.1623 (4)0.0692 (3)1.1206 (2)0.0172 (5)
C211.4960 (5)−0.0250 (3)1.2878 (2)0.0220 (5)
H21A1.39160.07331.31220.033*
H21B1.65980.00431.24840.033*
H21C1.5470−0.12881.35990.033*
U11U22U33U12U13U23
O10.0201 (8)0.0162 (9)0.0232 (9)−0.0018 (6)−0.0079 (6)−0.0016 (7)
O20.0138 (7)0.0175 (8)0.0376 (10)−0.0063 (6)−0.0052 (7)0.0017 (7)
O30.0228 (8)0.0134 (8)0.0260 (9)−0.0053 (6)−0.0103 (7)0.0010 (7)
O40.0243 (8)0.0170 (9)0.0262 (9)−0.0024 (6)−0.0048 (7)−0.0060 (7)
N10.0118 (8)0.0135 (9)0.0184 (9)−0.0030 (7)0.0003 (7)−0.0017 (8)
N20.0229 (10)0.0139 (10)0.0209 (10)−0.0021 (7)−0.0008 (8)−0.0053 (8)
N30.0245 (10)0.0165 (11)0.0183 (10)−0.0019 (8)−0.0045 (8)−0.0054 (8)
C10.0115 (9)0.0125 (10)0.0163 (11)−0.0010 (7)0.0023 (8)−0.0047 (8)
C20.0125 (9)0.0155 (11)0.0195 (11)−0.0034 (8)0.0000 (8)−0.0059 (9)
C30.0138 (10)0.0149 (11)0.0180 (11)−0.0004 (8)−0.0001 (8)−0.0032 (9)
C40.0187 (11)0.0121 (11)0.0227 (12)−0.0029 (8)0.0017 (9)−0.0032 (9)
C50.0179 (11)0.0174 (12)0.0260 (13)−0.0069 (8)0.0007 (9)−0.0085 (10)
C60.0136 (10)0.0171 (12)0.0189 (11)−0.0029 (8)−0.0014 (8)−0.0056 (9)
C70.0237 (12)0.0198 (12)0.0272 (12)0.0009 (9)−0.0095 (10)−0.0088 (10)
C80.0139 (10)0.0159 (11)0.0174 (11)−0.0024 (8)0.0000 (8)−0.0038 (9)
C90.0134 (9)0.0137 (11)0.0142 (10)−0.0016 (8)−0.0038 (8)−0.0021 (8)
C100.0129 (10)0.0169 (11)0.0179 (11)−0.0037 (8)0.0012 (8)−0.0043 (9)
C110.0168 (10)0.0166 (11)0.0217 (11)−0.0005 (8)−0.0025 (9)−0.0057 (9)
C120.0200 (11)0.0130 (11)0.0164 (11)−0.0055 (8)−0.0073 (9)0.0010 (9)
C130.0188 (11)0.0206 (12)0.0206 (12)−0.0061 (8)0.0018 (9)−0.0006 (9)
C140.0177 (11)0.0209 (12)0.0185 (11)−0.0017 (8)0.0027 (8)−0.0031 (9)
C150.0168 (10)0.0147 (11)0.0146 (11)−0.0018 (8)−0.0010 (8)0.0002 (9)
C160.0229 (11)0.0179 (12)0.0190 (11)−0.0069 (9)0.0001 (8)−0.0064 (9)
C170.0276 (12)0.0116 (10)0.0220 (12)−0.0034 (8)0.0005 (9)−0.0040 (9)
C180.0182 (11)0.0152 (11)0.0143 (10)−0.0053 (8)0.0034 (8)−0.0027 (9)
C190.0189 (10)0.0131 (10)0.0147 (10)−0.0043 (8)0.0014 (8)−0.0021 (9)
C200.0155 (10)0.0195 (12)0.0162 (11)−0.0034 (8)0.0022 (8)−0.0060 (9)
C210.0206 (11)0.0253 (13)0.0203 (11)−0.0024 (9)−0.0031 (9)−0.0091 (10)
O1—C31.369 (3)C7—H7A0.9800
O1—C71.440 (3)C7—H7B0.9800
O2—C81.237 (3)C7—H7C0.9800
O3—C151.368 (3)C9—C141.387 (3)
O3—C121.402 (3)C9—C101.394 (3)
O4—C201.239 (3)C10—C111.389 (3)
N1—C81.360 (3)C10—H100.9500
N1—C91.424 (3)C11—C121.387 (3)
N1—H1N0.89 (3)C11—H110.9500
N2—C181.340 (3)C12—C131.376 (3)
N2—C171.346 (3)C13—C141.387 (3)
N3—C201.337 (3)C13—H130.9500
N3—C211.450 (3)C14—H140.9500
N3—H3N0.85 (3)C15—C161.382 (3)
C1—C61.391 (3)C15—C191.387 (3)
C1—C21.397 (3)C16—C171.386 (3)
C1—C81.491 (3)C16—H160.9500
C2—C31.386 (3)C17—H170.9500
C2—H20.9500C18—C191.387 (3)
C3—C41.397 (3)C18—C201.510 (3)
C4—C51.380 (3)C19—H190.9500
C4—H40.9500C21—H21A0.9800
C5—C61.396 (3)C21—H21B0.9800
C5—H50.9500C21—H21C0.9800
C6—H60.9500
C3—O1—C7116.81 (17)C11—C10—C9120.1 (2)
C15—O3—C12119.17 (17)C11—C10—H10120.0
C8—N1—C9122.98 (18)C9—C10—H10120.0
C8—N1—H1N116 (2)C12—C11—C10119.2 (2)
C9—N1—H1N118 (2)C12—C11—H11120.4
C18—N2—C17116.25 (18)C10—C11—H11120.4
C20—N3—C21121.4 (2)C13—C12—C11121.2 (2)
C20—N3—H3N122 (2)C13—C12—O3118.26 (19)
C21—N3—H3N117 (2)C11—C12—O3120.3 (2)
C6—C1—C2120.42 (19)C12—C13—C14119.4 (2)
C6—C1—C8122.61 (19)C12—C13—H13120.3
C2—C1—C8116.91 (19)C14—C13—H13120.3
C3—C2—C1119.96 (19)C13—C14—C9120.4 (2)
C3—C2—H2120.0C13—C14—H14119.8
C1—C2—H2120.0C9—C14—H14119.8
O1—C3—C2124.4 (2)O3—C15—C16116.9 (2)
O1—C3—C4115.84 (19)O3—C15—C19123.2 (2)
C2—C3—C4119.77 (19)C16—C15—C19119.86 (19)
C5—C4—C3120.0 (2)C15—C16—C17118.2 (2)
C5—C4—H4120.0C15—C16—H16120.9
C3—C4—H4120.0C17—C16—H16120.9
C4—C5—C6120.8 (2)N2—C17—C16123.7 (2)
C4—C5—H5119.6N2—C17—H17118.1
C6—C5—H5119.6C16—C17—H17118.1
C1—C6—C5119.04 (19)N2—C18—C19124.8 (2)
C1—C6—H6120.5N2—C18—C20116.87 (18)
C5—C6—H6120.5C19—C18—C20118.32 (19)
O1—C7—H7A109.5C18—C19—C15117.2 (2)
O1—C7—H7B109.5C18—C19—H19121.4
H7A—C7—H7B109.5C15—C19—H19121.4
O1—C7—H7C109.5O4—C20—N3124.1 (2)
H7A—C7—H7C109.5O4—C20—C18120.93 (19)
H7B—C7—H7C109.5N3—C20—C18115.0 (2)
O2—C8—N1122.4 (2)N3—C21—H21A109.5
O2—C8—C1120.97 (19)N3—C21—H21B109.5
N1—C8—C1116.65 (19)H21A—C21—H21B109.5
C14—C9—C10119.6 (2)N3—C21—H21C109.5
C14—C9—N1120.77 (18)H21A—C21—H21C109.5
C10—C9—N1119.64 (19)H21B—C21—H21C109.5
C6—C1—C2—C31.0 (3)C15—O3—C12—C13−113.2 (2)
C8—C1—C2—C3178.42 (18)C15—O3—C12—C1172.9 (3)
C7—O1—C3—C2−16.6 (3)C11—C12—C13—C143.7 (3)
C7—O1—C3—C4164.13 (19)O3—C12—C13—C14−170.2 (2)
C1—C2—C3—O1179.13 (19)C12—C13—C14—C9−0.3 (3)
C1—C2—C3—C4−1.6 (3)C10—C9—C14—C13−3.6 (3)
O1—C3—C4—C5−180.0 (2)N1—C9—C14—C13176.2 (2)
C2—C3—C4—C50.7 (3)C12—O3—C15—C16−168.06 (19)
C3—C4—C5—C60.8 (3)C12—O3—C15—C1913.8 (3)
C2—C1—C6—C50.5 (3)O3—C15—C16—C17−179.4 (2)
C8—C1—C6—C5−176.77 (19)C19—C15—C16—C17−1.1 (3)
C4—C5—C6—C1−1.4 (3)C18—N2—C17—C160.8 (3)
C9—N1—C8—O22.7 (3)C15—C16—C17—N20.3 (4)
C9—N1—C8—C1−177.13 (19)C17—N2—C18—C19−1.2 (3)
C6—C1—C8—O2149.6 (2)C17—N2—C18—C20176.7 (2)
C2—C1—C8—O2−27.7 (3)N2—C18—C19—C150.3 (3)
C6—C1—C8—N1−30.6 (3)C20—C18—C19—C15−177.45 (19)
C2—C1—C8—N1152.10 (19)O3—C15—C19—C18178.95 (19)
C8—N1—C9—C14−46.8 (3)C16—C15—C19—C180.8 (3)
C8—N1—C9—C10133.0 (2)C21—N3—C20—O41.9 (3)
C14—C9—C10—C114.1 (3)C21—N3—C20—C18−176.19 (19)
N1—C9—C10—C11−175.67 (19)N2—C18—C20—O4179.9 (2)
C9—C10—C11—C12−0.7 (3)C19—C18—C20—O4−2.2 (3)
C10—C11—C12—C13−3.2 (3)N2—C18—C20—N3−2.0 (3)
C10—C11—C12—O3170.56 (18)C19—C18—C20—N3175.94 (19)
D—H···AD—HH···AD···AD—H···A
N1—H1N···O2i0.89 (3)2.08 (3)2.918 (2)155 (3)
N3—H3N···O1ii0.85 (3)2.38 (3)3.148 (3)151 (2)
N3—H3N···N20.85 (3)2.33 (3)2.681 (3)105 (2)
C7—H7B···O4iii0.982.553.475 (3)158
C14—H14···O20.952.562.887 (3)100
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1N⋯O2i0.89 (3)2.08 (3)2.918 (2)155 (3)
N3—H3N⋯O1ii0.85 (3)2.38 (3)3.148 (3)151 (2)
N3—H3N⋯N20.85 (3)2.33 (3)2.681 (3)105 (2)
C7—H7B⋯O4iii0.982.553.475 (3)158

Symmetry codes: (i) ; (ii) ; (iii) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Omega-carboxypyridyl substituted ureas as Raf kinase inhibitors: SAR of the amide substituent.

Authors:  Uday R Khire; Donald Bankston; James Barbosa; David R Brittelli; Yolanda Caringal; Robert Carlson; Jacques Dumas; Todd Gane; Sarah L Heald; Barbara Hibner; Jeffrey S Johnson; Michael E Katz; Nancy Kennure; Jill Kingery-Wood; Wendy Lee; Xiao-Gao Liu; Timothy B Lowinger; Ian McAlexander; Mary-Katherine Monahan; Reina Natero; Joel Renick; Bernd Riedl; Hong Rong; Robert N Sibley; Roger A Smith; Donald Wolanin
Journal:  Bioorg Med Chem Lett       Date:  2004-02-09       Impact factor: 2.823

3.  Discovery of N-phenyl nicotinamides as potent inhibitors of Kdr.

Authors:  Celia Dominguez; Leon Smith; Qi Huang; Chester Yuan; Xiaohu Ouyang; Lynn Cai; Paul Chen; Joseph Kim; Timothy Harvey; Rashid Syed; Tae-Seong Kim; Andrew Tasker; Ling Wang; Michael Zhang; Angela Coxon; James Bready; Charles Starnes; Danlin Chen; Yongmei Gan; Sesha Neervannan; Gondi Kumar; Anthony Polverino; Richard Kendall
Journal:  Bioorg Med Chem Lett       Date:  2007-08-22       Impact factor: 2.823

4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  4 in total

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