Literature DB >> 21579782

(1R,3aR,5aS,6S,8aR,8bR,9aS)-1-Hydr-oxy-6-isopropyl-1,3a,5a-trimethyl-perhydro-cyclo-penta-[a]cyclo-propa[i]naphthalen-4-one.

Iván Brito, Jorge Bórquez, Luis Alberto Loyola, Michael Bolte, Joselyn Albanez.   

Abstract

The title compound (also know as azorellanone), C(20)H(32)O(2), is built up from three fused carbocycles, one five-membered ring and two six-membered rings. The five membered-ring has an envelope conformation, whereas the six-membered rings have a distorted half-chair and a twist-boat conformation. In the crystal, mol-ecules are linked by O-H⋯O inter-actions into zigzag chains with graph-set notation C(8) along [010]. The absolute configuration was assigned on the basis of earlier chemical studies.

Entities:  

Year:  2010        PMID: 21579782      PMCID: PMC2979771          DOI: 10.1107/S1600536810001169

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Loyola et al. (1998 ▶, 2000 ▶, 2001 ▶, 2004 ▶); Borquez et al. (2007 ▶). For the biological properties of diterpenoids with azorellane and mulinane skeletons, see: Chiaramello et al. (2003 ▶); Fuentes et al. (2005 ▶); Delporte et al. (2003 ▶); Morales et al. (2003 ▶); Neira et al. (1998 ▶). For graph-set notation, see: Bernstein et al. (1995 ▶). For a description of the Cambridge Structural Database, see: Allen (2002 ▶). For puckering parameters, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

C20H32O2 M = 304.46 Monoclinic, a = 6.0073 (5) Å b = 13.3348 (11) Å c = 11.2743 (8) Å β = 99.271 (6)° V = 891.34 (12) Å3 Z = 2 Mo Kα radiation μ = 0.07 mm−1 T = 173 K 0.37 × 0.36 × 0.36 mm

Data collection

Stoe IPDSII two-circle diffractometer 6336 measured reflections 2107 independent reflections 1876 reflections with I > 2σ(I) R int = 0.066

Refinement

R[F 2 > 2σ(F 2)] = 0.041 wR(F 2) = 0.100 S = 1.00 2107 reflections 204 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.2 e Å−3 Δρmin = −0.16 e Å−3 Data collection: X-AREA (Stoe & Cie, 2001 ▶); cell refinement: X-AREA; data reduction: X-AREA; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: XP in SHELXTL-Plus (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810001169/fl2288sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810001169/fl2288Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H32O2F(000) = 336
Mr = 304.46Dx = 1.134 Mg m3
Monoclinic, P21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ybCell parameters from 6216 reflections
a = 6.0073 (5) Åθ = 3.5–27.8°
b = 13.3348 (11) ŵ = 0.07 mm1
c = 11.2743 (8) ÅT = 173 K
β = 99.271 (6)°Block, colourless
V = 891.34 (12) Å30.37 × 0.36 × 0.36 mm
Z = 2
Stoe IPDSII two-circle diffractometerRint = 0.066
graphiteθmax = 27.5°, θmin = 3.4°
ω scansh = −7→7
6336 measured reflectionsk = −17→17
2107 independent reflectionsl = −13→14
1876 reflections with I > 2σ(I)
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.041H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.100w = 1/[σ2(Fo2) + (0.065P)2] where P = (Fo2 + 2Fc2)/3
S = 1.00(Δ/σ)max < 0.001
2107 reflectionsΔρmax = 0.2 e Å3
204 parametersΔρmin = −0.16 e Å3
1 restraintExtinction correction: SHELXL97 (Sheldrick, 2008)
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.035 (6)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O11.0462 (3)0.74056 (12)0.32053 (17)0.0400 (4)
H11.088 (5)0.801 (2)0.369 (3)0.053 (8)*
O20.8592 (3)0.42953 (12)0.55110 (15)0.0470 (5)
C10.8182 (4)0.44374 (16)0.0885 (2)0.0340 (4)
H1A0.95690.47970.07610.041*
H1B0.6880.47270.03440.041*
C20.8394 (3)0.33017 (15)0.06515 (19)0.0313 (4)
H2A0.99120.31440.04670.038*
H2B0.72530.3089−0.00360.038*
C30.8004 (3)0.27562 (15)0.18129 (18)0.0261 (4)
H30.95060.26840.23360.031*
C40.7041 (3)0.16952 (15)0.1557 (2)0.0311 (4)
H40.56640.17510.09310.037*
C50.6621 (3)0.35294 (14)0.24246 (18)0.0246 (4)
C60.6819 (4)0.34028 (15)0.38011 (19)0.0308 (4)
H6A0.53530.31640.39870.037*
H6B0.79560.28780.40680.037*
C70.7475 (3)0.43507 (15)0.45144 (19)0.0302 (4)
C80.6549 (3)0.53588 (15)0.40016 (18)0.0271 (4)
C90.6806 (3)0.54398 (14)0.26617 (18)0.0272 (4)
C100.7838 (3)0.45080 (14)0.21941 (18)0.0254 (4)
H100.9380.44510.26790.03*
C110.5111 (4)0.60649 (17)0.1836 (2)0.0364 (5)
H11A0.46390.58230.10030.044*
H11B0.39160.64090.21920.044*
C120.7496 (4)0.64378 (15)0.2178 (2)0.0340 (5)
H120.84330.63740.15250.041*
C130.8031 (4)0.73557 (15)0.2965 (2)0.0356 (5)
C140.7134 (4)0.72394 (15)0.4149 (2)0.0357 (5)
H14A0.77520.77820.47060.043*
H14B0.54710.73050.40.043*
C150.7781 (3)0.62273 (15)0.47304 (19)0.0307 (4)
H15A0.74020.62210.55530.037*
H15B0.9430.6130.47950.037*
C160.7113 (5)0.83020 (18)0.2302 (3)0.0524 (7)
H16A0.74720.88850.28270.079*
H16B0.54730.82450.20750.079*
H16C0.78030.83840.15770.079*
C170.4059 (4)0.53345 (18)0.4215 (2)0.0370 (5)
H17A0.33060.59590.39210.055*
H17B0.4020.52640.50770.055*
H17C0.32810.47650.37820.055*
C180.8759 (4)0.10463 (17)0.1047 (2)0.0425 (5)
H18A0.91960.13790.03440.064*
H18B0.80870.03920.08090.064*
H18C1.00950.09510.16610.064*
C190.6366 (5)0.11760 (17)0.2651 (2)0.0429 (5)
H19A0.52750.15940.29850.064*
H19B0.77060.10760.32610.064*
H19C0.56820.05250.24110.064*
C200.4160 (3)0.35344 (16)0.1790 (2)0.0338 (4)
H20A0.41190.3610.09220.051*
H20B0.33560.40950.20920.051*
H20C0.34350.29020.19520.051*
U11U22U33U12U13U23
O10.0403 (8)0.0284 (7)0.0521 (10)−0.0029 (6)0.0101 (7)−0.0037 (7)
O20.0642 (10)0.0364 (8)0.0347 (9)0.0084 (8)−0.0096 (8)0.0001 (7)
C10.0422 (10)0.0317 (10)0.0303 (11)−0.0025 (8)0.0127 (8)0.0006 (8)
C20.0327 (9)0.0345 (10)0.0287 (10)−0.0030 (7)0.0109 (8)−0.0038 (8)
C30.0235 (8)0.0298 (9)0.0251 (9)0.0000 (7)0.0041 (7)−0.0019 (7)
C40.0317 (10)0.0282 (9)0.0325 (11)−0.0004 (7)0.0028 (8)−0.0044 (8)
C50.0214 (8)0.0275 (8)0.0253 (10)−0.0013 (6)0.0055 (6)−0.0015 (7)
C60.0375 (10)0.0303 (9)0.0261 (10)−0.0009 (8)0.0099 (8)0.0006 (8)
C70.0330 (9)0.0331 (10)0.0257 (10)0.0025 (8)0.0084 (7)0.0008 (8)
C80.0255 (9)0.0299 (9)0.0261 (10)0.0024 (7)0.0048 (7)−0.0035 (7)
C90.0271 (9)0.0286 (9)0.0251 (10)0.0010 (7)0.0020 (7)−0.0001 (7)
C100.0230 (7)0.0274 (8)0.0261 (10)−0.0010 (7)0.0054 (6)0.0006 (7)
C110.0400 (11)0.0332 (10)0.0326 (11)0.0057 (9)−0.0041 (8)0.0012 (8)
C120.0414 (11)0.0271 (9)0.0328 (11)0.0005 (8)0.0041 (9)0.0021 (8)
C130.0393 (11)0.0255 (9)0.0406 (12)0.0021 (8)0.0020 (9)−0.0017 (9)
C140.0347 (10)0.0319 (11)0.0397 (12)0.0048 (8)0.0034 (9)−0.0086 (8)
C150.0312 (9)0.0332 (10)0.0278 (10)0.0008 (8)0.0047 (7)−0.0048 (8)
C160.0708 (17)0.0302 (11)0.0520 (16)0.0069 (11)−0.0024 (13)0.0029 (11)
C170.0303 (10)0.0403 (11)0.0425 (13)0.0010 (8)0.0126 (8)−0.0066 (10)
C180.0462 (12)0.0343 (11)0.0475 (15)0.0059 (9)0.0095 (10)−0.0106 (10)
C190.0560 (14)0.0314 (10)0.0429 (14)−0.0048 (10)0.0130 (11)−0.0010 (10)
C200.0227 (8)0.0373 (10)0.0413 (12)−0.0006 (8)0.0046 (8)−0.0054 (9)
O1—C131.443 (3)C10—H101.00
O1—H10.99 (3)C11—C121.507 (3)
O2—C71.215 (3)C11—H11A0.99
C1—C101.525 (3)C11—H11B0.99
C1—C21.546 (3)C12—C131.516 (3)
C1—H1A0.99C12—H121.00
C1—H1B0.99C13—C161.524 (3)
C2—C31.548 (3)C13—C141.525 (4)
C2—H2A0.99C14—C151.523 (3)
C2—H2B0.99C14—H14A0.99
C3—C41.538 (3)C14—H14B0.99
C3—C51.553 (3)C15—H15A0.99
C3—H31.00C15—H15B0.99
C4—C191.525 (3)C16—H16A0.98
C4—C181.529 (3)C16—H16B0.98
C4—H41.00C16—H16C0.98
C5—C201.535 (2)C17—H17A0.98
C5—C101.538 (3)C17—H17B0.98
C5—C61.547 (3)C17—H17C0.98
C6—C71.516 (3)C18—H18A0.98
C6—H6A0.99C18—H18B0.98
C6—H6B0.99C18—H18C0.98
C7—C81.532 (3)C19—H19A0.98
C8—C151.539 (3)C19—H19B0.98
C8—C91.547 (3)C19—H19C0.98
C8—C171.553 (3)C20—H20A0.98
C9—C111.514 (3)C20—H20B0.98
C9—C101.520 (3)C20—H20C0.98
C9—C121.521 (3)
C13—O1—H1107.5 (18)C12—C11—H11A117.7
C10—C1—C2104.67 (16)C9—C11—H11A117.7
C10—C1—H1A110.8C12—C11—H11B117.7
C2—C1—H1A110.8C9—C11—H11B117.7
C10—C1—H1B110.8H11A—C11—H11B114.8
C2—C1—H1B110.8C11—C12—C13121.3 (2)
H1A—C1—H1B108.9C11—C12—C960.01 (14)
C1—C2—C3106.74 (17)C13—C12—C9122.7 (2)
C1—C2—H2A110.4C11—C12—H12114.1
C3—C2—H2A110.4C13—C12—H12114.1
C1—C2—H2B110.4C9—C12—H12114.1
C3—C2—H2B110.4O1—C13—C12105.05 (18)
H2A—C2—H2B108.6O1—C13—C16109.21 (19)
C4—C3—C2112.18 (16)C12—C13—C16110.81 (19)
C4—C3—C5118.79 (15)O1—C13—C14109.27 (18)
C2—C3—C5103.20 (15)C12—C13—C14111.03 (18)
C4—C3—H3107.4C16—C13—C14111.26 (19)
C2—C3—H3107.4C15—C14—C13111.42 (17)
C5—C3—H3107.4C15—C14—H14A109.3
C19—C4—C18109.33 (18)C13—C14—H14A109.3
C19—C4—C3114.03 (18)C15—C14—H14B109.3
C18—C4—C3109.55 (17)C13—C14—H14B109.3
C19—C4—H4107.9H14A—C14—H14B108
C18—C4—H4107.9C14—C15—C8111.71 (16)
C3—C4—H4107.9C14—C15—H15A109.3
C20—C5—C10111.46 (15)C8—C15—H15A109.3
C20—C5—C6112.37 (17)C14—C15—H15B109.3
C10—C5—C6107.48 (15)C8—C15—H15B109.3
C20—C5—C3109.86 (16)H15A—C15—H15B107.9
C10—C5—C3100.68 (14)C13—C16—H16A109.5
C6—C5—C3114.39 (16)C13—C16—H16B109.5
C7—C6—C5114.38 (16)H16A—C16—H16B109.5
C7—C6—H6A108.7C13—C16—H16C109.5
C5—C6—H6A108.7H16A—C16—H16C109.5
C7—C6—H6B108.7H16B—C16—H16C109.5
C5—C6—H6B108.7C8—C17—H17A109.5
H6A—C6—H6B107.6C8—C17—H17B109.5
O2—C7—C6119.85 (18)H17A—C17—H17B109.5
O2—C7—C8121.02 (18)C8—C17—H17C109.5
C6—C7—C8118.94 (17)H17A—C17—H17C109.5
C7—C8—C15110.17 (16)H17B—C17—H17C109.5
C7—C8—C9110.04 (15)C4—C18—H18A109.5
C15—C8—C9110.73 (16)C4—C18—H18B109.5
C7—C8—C17102.90 (17)H18A—C18—H18B109.5
C15—C8—C17108.97 (16)C4—C18—H18C109.5
C9—C8—C17113.75 (17)H18A—C18—H18C109.5
C11—C9—C10120.53 (17)H18B—C18—H18C109.5
C11—C9—C1259.54 (14)C4—C19—H19A109.5
C10—C9—C12116.15 (17)C4—C19—H19B109.5
C11—C9—C8118.43 (17)H19A—C19—H19B109.5
C10—C9—C8113.08 (16)C4—C19—H19C109.5
C12—C9—C8119.15 (17)H19A—C19—H19C109.5
C9—C10—C1120.82 (17)H19B—C19—H19C109.5
C9—C10—C5113.78 (16)C5—C20—H20A109.5
C1—C10—C5104.67 (15)C5—C20—H20B109.5
C9—C10—H10105.4H20A—C20—H20B109.5
C1—C10—H10105.4C5—C20—H20C109.5
C5—C10—H10105.4H20A—C20—H20C109.5
C12—C11—C960.45 (13)H20B—C20—H20C109.5
C10—C1—C2—C33.7 (2)C12—C9—C10—C1−38.2 (2)
C1—C2—C3—C4152.34 (17)C8—C9—C10—C1178.76 (16)
C1—C2—C3—C523.3 (2)C11—C9—C10—C5−95.5 (2)
C2—C3—C4—C19−173.09 (18)C12—C9—C10—C5−164.01 (16)
C5—C3—C4—C19−52.7 (2)C8—C9—C10—C553.0 (2)
C2—C3—C4—C1864.0 (2)C2—C1—C10—C9−159.73 (17)
C5—C3—C4—C18−175.61 (18)C2—C1—C10—C5−29.8 (2)
C4—C3—C5—C20−48.0 (2)C20—C5—C10—C961.6 (2)
C2—C3—C5—C2076.87 (19)C6—C5—C10—C9−62.0 (2)
C4—C3—C5—C10−165.61 (16)C3—C5—C10—C9178.04 (16)
C2—C3—C5—C10−40.77 (17)C20—C5—C10—C1−72.4 (2)
C4—C3—C5—C679.5 (2)C6—C5—C10—C1164.08 (15)
C2—C3—C5—C6−155.67 (15)C3—C5—C10—C144.09 (17)
C20—C5—C6—C7−106.20 (19)C10—C9—C11—C12−104.3 (2)
C10—C5—C6—C716.8 (2)C8—C9—C11—C12108.9 (2)
C3—C5—C6—C7127.63 (17)C9—C11—C12—C13−112.3 (2)
C5—C6—C7—O2−148.2 (2)C10—C9—C12—C11111.6 (2)
C5—C6—C7—C836.7 (3)C8—C9—C12—C11−107.7 (2)
O2—C7—C8—C1516.3 (3)C11—C9—C12—C13110.0 (2)
C6—C7—C8—C15−168.73 (18)C10—C9—C12—C13−138.4 (2)
O2—C7—C8—C9138.6 (2)C8—C9—C12—C132.3 (3)
C6—C7—C8—C9−46.4 (2)C11—C12—C13—O1173.55 (19)
O2—C7—C8—C17−99.8 (2)C9—C12—C13—O1101.3 (2)
C6—C7—C8—C1775.2 (2)C11—C12—C13—C16−68.6 (3)
C7—C8—C9—C11150.51 (18)C9—C12—C13—C16−140.9 (2)
C15—C8—C9—C11−87.4 (2)C11—C12—C13—C1455.5 (3)
C17—C8—C9—C1135.7 (3)C9—C12—C13—C14−16.7 (3)
C7—C8—C9—C101.4 (2)O1—C13—C14—C15−67.2 (2)
C15—C8—C9—C10123.40 (17)C12—C13—C14—C1548.2 (2)
C17—C8—C9—C10−113.48 (19)C16—C13—C14—C15172.11 (18)
C7—C8—C9—C12−140.47 (18)C13—C14—C15—C8−68.4 (2)
C15—C8—C9—C12−18.4 (2)C7—C8—C15—C14172.31 (18)
C17—C8—C9—C12104.7 (2)C9—C8—C15—C1450.3 (2)
C11—C9—C10—C130.3 (3)C17—C8—C15—C14−75.5 (2)
D—H···AD—HH···AD···AD—H···A
O1—H1···O2i0.99 (3)1.93 (3)2.916 (2)172 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1⋯O2i0.99 (3)1.93 (3)2.916 (2)172 (3)

Symmetry code: (i) .

  11 in total

1.  The Cambridge Structural Database: a quarter of a million crystal structures and rising.

Authors:  Frank H Allen
Journal:  Acta Crystallogr B       Date:  2002-05-29

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Pharmaco-toxicological study of diterpenoids.

Authors:  Carla Delporte; Nadine Backhouse; Pedro Salinas; Aurelio San-Martín; Jorge Bórquez; Alberto Loyola
Journal:  Bioorg Med Chem       Date:  2003-04-03       Impact factor: 3.641

4.  Experimental antihyperglycemic effect of diterpenoids of llareta Azorella compacta (Umbelliferae) Phil in rats.

Authors:  Nelson L Fuentes; Hernan Sagua; Glauco Morales; Jorge Borquez; Aurelio San Martin; Julia Soto; Luis A Loyola
Journal:  Phytother Res       Date:  2005-08       Impact factor: 5.878

5.  Diterpenoids from Azorella yareta and their trichomonicidal activities.

Authors:  L A Loyola; J Bórquez; G Morales; J Araya; J González; I Neira; H Sagua; A San-Martín
Journal:  Phytochemistry       Date:  2001-01       Impact factor: 4.072

6.  Effect of azorellanone, a diterpene from Azorella yareta Hauman, on human sperm physiology.

Authors:  Patricio Morales; Milene Kong; Eduardo Pizarro; Consuelo Pasten; Glauco Morales; Jorge Borquez; Luis A Loyola
Journal:  J Androl       Date:  2003 May-Jun

7.  Mulinane-type diterpenoids from Azorella compacta display antiplasmodial activity.

Authors:  Luis A Loyola; Jorge Bórquez; Glauco Morales; Aurelio San-Martín; Jose Darias; Ninoska Flores; Alberto Giménez
Journal:  Phytochemistry       Date:  2004-07       Impact factor: 4.072

8.  [Activity of Dipernoids isolated from Azorella compacta (Llareta) on Trypanosoma cruzi amastigotes].

Authors:  I Neira; L Poblete; P Porcille; P Silva; J Araya; J Bórquez; G Morales; L A Loyola; H Sagua
Journal:  Bol Chil Parasitol       Date:  1998 Jan-Jun

9.  Mulinane-type diterpenoids from Mulinum spinosum.

Authors:  Alejandra I Chiaramello; Carlos E Ardanaz; Eduardo E García; Pedro C Rossomando
Journal:  Phytochemistry       Date:  2003-08       Impact factor: 4.072

10.  Azorellane diterpenoids from Laretia acaulis inhibit nuclear factor-kappa B activity.

Authors:  Jorge Borquez; Luis A Loyola; Glauco Morales; Aurelio San-Martín; Raquel Roldan; Nieves Marquez; Eduardo Muñoz
Journal:  Phytother Res       Date:  2007-11       Impact factor: 5.878

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