Literature DB >> 21579778

5α-Pregna-1,20-dien-3-one.

Guang-Ying Chen, Mei-Yan Wei, Ni Tan, Zhen Liu, Rui-Yun Yang.   

Abstract

The title compound, C(21)H(30)O, was isolated from the soft coral Sinularia sp. The mol-ecule contains four alicyclic rings, all trans-fused, among which three six-membered rings are in different distorted chair conformations while a five-membered ring assumes an envelope form.

Entities:  

Year:  2010        PMID: 21579778      PMCID: PMC2979690          DOI: 10.1107/S1600536810000863

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to marine pregnanes isolated from marine organisms, see: Higgs & Faulkner (1977 ▶); Blackman et al. (1985 ▶); Hooper & Davies-Coleman (1995 ▶); Kittakoop et al. (1999 ▶); Li et al. (2009 ▶); Yan et al. (2004 ▶, 2007 ▶); Zhang et al. (2005 ▶); Seo et al. (1995 ▶).

Experimental

Crystal data

C21H30O M = 298.45 Orthorhombic, a = 7.2619 (13) Å b = 10.998 (2) Å c = 21.964 (4) Å V = 1754.2 (6) Å3 Z = 4 Mo Kα radiation μ = 0.07 mm−1 T = 293 K 0.25 × 0.22 × 0.20 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.984, T max = 0.987 7653 measured reflections 1995 independent reflections 1563 reflections with I > 2σ(I) R int = 0.053

Refinement

R[F 2 > 2σ(F 2)] = 0.051 wR(F 2) = 0.114 S = 1.10 1995 reflections 201 parameters H-atom parameters constrained Δρmax = 0.13 e Å−3 Δρmin = −0.18 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶) and DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810000863/gk2251sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810000863/gk2251Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C21H30OF(000) = 656
Mr = 298.45Dx = 1.130 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 7653 reflections
a = 7.2619 (13) Åθ = 2.1–26.0°
b = 10.998 (2) ŵ = 0.07 mm1
c = 21.964 (4) ÅT = 293 K
V = 1754.2 (6) Å3Block, colorless
Z = 40.25 × 0.22 × 0.20 mm
Bruker APEXII CCD diffractometer1995 independent reflections
Radiation source: fine-focus sealed tube1563 reflections with I > 2σ(I)
graphiteRint = 0.053
Detector resolution: 0 pixels mm-1θmax = 26.0°, θmin = 2.1°
φ and ω scansh = −8→6
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)k = −13→13
Tmin = 0.984, Tmax = 0.987l = −27→25
7653 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.051Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.114H-atom parameters constrained
S = 1.10w = 1/[σ2(Fo2) + (0.0531P)2] where P = (Fo2 + 2Fc2)/3
1995 reflections(Δ/σ)max < 0.001
201 parametersΔρmax = 0.13 e Å3
0 restraintsΔρmin = −0.17 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.4468 (4)0.1678 (3)0.18505 (11)0.0607 (8)
H10.56130.13440.17600.073*
C20.4398 (5)0.2554 (3)0.22674 (13)0.0709 (10)
H20.54950.28150.24420.085*
C30.2683 (5)0.3124 (3)0.24637 (12)0.0684 (9)
C40.0964 (4)0.2700 (3)0.21577 (12)0.0602 (8)
H4A0.01080.33750.21270.072*
H4B0.03910.20750.24050.072*
C50.1328 (4)0.2193 (2)0.15234 (11)0.0470 (7)
H50.18220.28700.12840.056*
C6−0.0413 (4)0.1780 (3)0.11961 (11)0.0507 (7)
H6A−0.13280.24220.12100.061*
H6B−0.09180.10710.13990.061*
C70.0026 (4)0.1469 (2)0.05360 (11)0.0500 (7)
H7A−0.10750.11490.03440.060*
H7B0.03630.22100.03240.060*
C80.1565 (3)0.0555 (2)0.04637 (11)0.0417 (6)
H80.1119−0.02340.06100.050*
C90.3289 (3)0.0902 (2)0.08406 (11)0.0414 (6)
H90.37360.16670.06660.050*
C100.2826 (4)0.1193 (2)0.15166 (11)0.0446 (6)
C110.4847 (4)−0.0019 (2)0.07458 (11)0.0500 (7)
H11A0.4480−0.07960.09160.060*
H11B0.59320.02550.09640.060*
C120.5332 (4)−0.0188 (2)0.00707 (11)0.0477 (7)
H12A0.58360.0564−0.00890.057*
H12B0.6266−0.08140.00320.057*
C130.3649 (3)−0.0546 (2)−0.02996 (11)0.0430 (6)
C140.2141 (3)0.0410 (2)−0.01977 (11)0.0429 (6)
H140.26890.1190−0.03150.051*
C150.0723 (4)0.0120 (3)−0.06889 (11)0.0591 (8)
H15A0.00360.0842−0.08020.071*
H15B−0.0133−0.0498−0.05510.071*
C160.1885 (4)−0.0347 (3)−0.12272 (13)0.0706 (9)
H16A0.1441−0.1135−0.13600.085*
H16B0.18110.0215−0.15670.085*
C170.3882 (4)−0.0446 (3)−0.09989 (11)0.0528 (7)
H170.44840.0334−0.10830.063*
C180.3017 (4)−0.1838 (2)−0.01350 (13)0.0591 (8)
H18A0.4009−0.2398−0.02040.089*
H18B0.1985−0.2059−0.03840.089*
H18C0.2664−0.18630.02860.089*
C190.2221 (5)0.0030 (3)0.18588 (12)0.0617 (9)
H19A0.3250−0.05120.18950.093*
H19B0.1252−0.03630.16360.093*
H19C0.17850.02450.22570.093*
C200.5016 (5)−0.1414 (3)−0.12920 (12)0.0672 (9)
H200.4512−0.2189−0.13170.081*
C210.6668 (5)−0.1253 (4)−0.15167 (14)0.0843 (12)
H21A0.7218−0.0490−0.15000.101*
H21B0.7292−0.1903−0.16930.101*
O10.2658 (4)0.3879 (3)0.28688 (11)0.1084 (10)
U11U22U33U12U13U23
C10.052 (2)0.083 (2)0.0466 (16)−0.0024 (18)−0.0062 (13)−0.0025 (15)
C20.061 (2)0.096 (3)0.0553 (18)−0.013 (2)−0.0124 (15)−0.0138 (18)
C30.079 (2)0.080 (2)0.0458 (16)−0.006 (2)−0.0011 (16)−0.0092 (16)
C40.064 (2)0.069 (2)0.0477 (17)0.0012 (17)0.0080 (15)−0.0002 (14)
C50.0485 (17)0.0497 (16)0.0428 (14)−0.0039 (14)0.0042 (12)0.0054 (11)
C60.0385 (16)0.0609 (17)0.0528 (15)0.0040 (15)0.0040 (12)0.0011 (13)
C70.0376 (15)0.0606 (17)0.0519 (15)0.0020 (15)−0.0075 (12)0.0021 (12)
C80.0352 (15)0.0439 (15)0.0461 (14)−0.0050 (13)−0.0032 (11)0.0046 (11)
C90.0386 (15)0.0432 (15)0.0425 (13)−0.0045 (13)−0.0013 (11)0.0055 (11)
C100.0430 (16)0.0523 (15)0.0386 (13)−0.0017 (14)−0.0032 (12)0.0046 (11)
C110.0402 (16)0.0606 (18)0.0493 (15)0.0031 (14)−0.0084 (12)−0.0012 (13)
C120.0408 (17)0.0443 (15)0.0580 (16)0.0010 (13)−0.0012 (12)−0.0028 (12)
C130.0400 (16)0.0423 (15)0.0468 (15)−0.0025 (13)−0.0002 (12)0.0019 (11)
C140.0392 (15)0.0463 (15)0.0432 (14)−0.0017 (13)−0.0053 (12)0.0050 (11)
C150.0547 (18)0.074 (2)0.0490 (17)0.0044 (17)−0.0140 (14)−0.0022 (14)
C160.072 (2)0.092 (2)0.0473 (16)0.003 (2)−0.0123 (16)−0.0092 (16)
C170.0557 (19)0.0532 (17)0.0494 (16)−0.0035 (16)0.0026 (13)−0.0025 (13)
C180.061 (2)0.0501 (17)0.0664 (17)−0.0050 (16)−0.0004 (15)0.0007 (14)
C190.071 (2)0.0659 (19)0.0482 (16)0.0009 (18)0.0012 (14)0.0170 (13)
C200.075 (2)0.077 (2)0.0502 (17)0.000 (2)0.0013 (16)−0.0143 (15)
C210.071 (3)0.108 (3)0.074 (2)0.013 (2)0.009 (2)−0.027 (2)
O10.114 (2)0.125 (2)0.0864 (17)0.003 (2)−0.0065 (16)−0.0523 (16)
C1—C21.330 (4)C11—H11B0.9700
C1—C101.498 (4)C12—C131.520 (3)
C1—H10.9300C12—H12A0.9700
C2—C31.460 (5)C12—H12B0.9700
C2—H20.9300C13—C181.536 (4)
C3—O11.217 (3)C13—C141.534 (4)
C3—C41.493 (4)C13—C171.549 (3)
C4—C51.524 (4)C14—C151.525 (3)
C4—H4A0.9700C14—H140.9800
C4—H4B0.9700C15—C161.541 (4)
C5—C61.523 (4)C15—H15A0.9700
C5—C101.547 (4)C15—H15B0.9700
C5—H50.9800C16—C171.539 (4)
C6—C71.523 (4)C16—H16A0.9700
C6—H6A0.9700C16—H16B0.9700
C6—H6B0.9700C17—C201.492 (4)
C7—C81.512 (3)C17—H170.9800
C7—H7A0.9700C18—H18A0.9600
C7—H7B0.9700C18—H18B0.9600
C8—C141.520 (3)C18—H18C0.9600
C8—C91.549 (3)C19—H19A0.9600
C8—H80.9800C19—H19B0.9600
C9—C111.532 (3)C19—H19C0.9600
C9—C101.556 (3)C20—C211.309 (4)
C9—H90.9800C20—H200.9300
C10—C191.547 (4)C21—H21A0.9300
C11—C121.535 (4)C21—H21B0.9300
C11—H11A0.9700
C2—C1—C10124.4 (3)H11A—C11—H11B107.9
C2—C1—H1117.8C13—C12—C11111.3 (2)
C10—C1—H1117.8C13—C12—H12A109.4
C1—C2—C3123.2 (3)C11—C12—H12A109.4
C1—C2—H2118.4C13—C12—H12B109.4
C3—C2—H2118.4C11—C12—H12B109.4
O1—C3—C2121.5 (3)H12A—C12—H12B108.0
O1—C3—C4122.0 (3)C12—C13—C18110.7 (2)
C2—C3—C4116.5 (2)C12—C13—C14108.6 (2)
C3—C4—C5112.4 (2)C18—C13—C14112.7 (2)
C3—C4—H4A109.1C12—C13—C17115.1 (2)
C5—C4—H4A109.1C18—C13—C17109.4 (2)
C3—C4—H4B109.1C14—C13—C17100.0 (2)
C5—C4—H4B109.1C8—C14—C15120.8 (2)
H4A—C4—H4B107.9C8—C14—C13114.1 (2)
C6—C5—C4113.4 (2)C15—C14—C13103.6 (2)
C6—C5—C10111.5 (2)C8—C14—H14105.7
C4—C5—C10113.0 (2)C15—C14—H14105.7
C6—C5—H5106.1C13—C14—H14105.7
C4—C5—H5106.1C14—C15—C16104.1 (2)
C10—C5—H5106.1C14—C15—H15A110.9
C5—C6—C7110.0 (2)C16—C15—H15A110.9
C5—C6—H6A109.7C14—C15—H15B110.9
C7—C6—H6A109.7C16—C15—H15B110.9
C5—C6—H6B109.7H15A—C15—H15B109.0
C7—C6—H6B109.7C17—C16—C15106.8 (2)
H6A—C6—H6B108.2C17—C16—H16A110.4
C8—C7—C6113.8 (2)C15—C16—H16A110.4
C8—C7—H7A108.8C17—C16—H16B110.4
C6—C7—H7A108.8C15—C16—H16B110.4
C8—C7—H7B108.8H16A—C16—H16B108.6
C6—C7—H7B108.8C20—C17—C16115.5 (3)
H7A—C7—H7B107.7C20—C17—C13116.0 (2)
C7—C8—C14111.9 (2)C16—C17—C13103.0 (2)
C7—C8—C9112.2 (2)C20—C17—H17107.3
C14—C8—C9108.3 (2)C16—C17—H17107.3
C7—C8—H8108.1C13—C17—H17107.3
C14—C8—H8108.1C13—C18—H18A109.5
C9—C8—H8108.1C13—C18—H18B109.5
C11—C9—C8111.2 (2)H18A—C18—H18B109.5
C11—C9—C10115.2 (2)C13—C18—H18C109.5
C8—C9—C10112.7 (2)H18A—C18—H18C109.5
C11—C9—H9105.6H18B—C18—H18C109.5
C8—C9—H9105.6C10—C19—H19A109.5
C10—C9—H9105.6C10—C19—H19B109.5
C1—C10—C19106.4 (2)H19A—C19—H19B109.5
C1—C10—C5107.6 (2)C10—C19—H19C109.5
C19—C10—C5112.5 (2)H19A—C19—H19C109.5
C1—C10—C9111.6 (2)H19B—C19—H19C109.5
C19—C10—C9110.8 (2)C21—C20—C17124.9 (3)
C5—C10—C9107.9 (2)C21—C20—H20117.5
C9—C11—C12112.4 (2)C17—C20—H20117.5
C9—C11—H11A109.1C20—C21—H21A120.0
C12—C11—H11A109.1C20—C21—H21B120.0
C9—C11—H11B109.1H21A—C21—H21B120.0
C12—C11—H11B109.1
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Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  5alpha-Pregna-1,20-dien-3-one and related compounds from a soft coral.

Authors:  M D Higgs; D J Faulkner
Journal:  Steroids       Date:  1977-09       Impact factor: 2.668

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Authors:  P Kittakoop; R Suttisri; C Chaichantipyuth; S Vethchagarun; K Suwanborirux
Journal:  J Nat Prod       Date:  1999-02       Impact factor: 4.050

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