Literature DB >> 21579743

A second ortho-rhom-bic polymorph of (Z)-3-(9-anthr-yl)-1-(2-thien-yl)prop-2-en-1-one.

Suchada Chantrapromma, Thitipone Suwunwong, Nawong Boonnak, Hoong-Kun Fun.   

Abstract

The title heteroaryl chalcone, C(21)H(14)OS, is a second ortho-rhom-bic polymorph which crystallizes in the space group P2(1)2(1)2(1). The structure was previously reported [Fun et al. (2009 ▶). Acta Cryst. E65, o2168-o2169] in the space group Pna2(1). The bond distances and angles are similar in both structures. In contrast, the overall crystal packing is different from that in the first ortho-rhom-bic Pna2(1) polymorph in which mol-ecules were stacked into columns along the b axis and the thio-phene units of two adjacent columns were stacked in a head to tail fashion. In the present polymorph, mol-ecules are found to dimerize through a weak S⋯S inter-action [3.6513 (7) Å] and these dimers are arranged into sheets parallel to the bc plane. There are no classical hydrogen bonds in the packing which features short C⋯O [3.2832 (2)-3.6251 (9) Å], C⋯S [3.4879 (17)-3.6251 (19) Å] and S⋯O [2.9948 (16) Å] contacts, together with C-H⋯π inter-actions. Similar contacts were found in the other polymorph.

Entities:  

Year:  2010        PMID: 21579743      PMCID: PMC2979950          DOI: 10.1107/S1600536810000061

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For bond-length data, see: Allen et al. (1987 ▶). For the structure of the first polymorph, see: Fun et al. (2009 ▶). For background to and applications of chalcones, see: Chantrapromma et al. (2009 ▶); Patil & Dharmaprakash (2008 ▶); Saydam et al. (2003 ▶); Suwunwong et al. (2009 ▶); Svetlichny et al. (2007 ▶). For the stability of the temperature controller used in the data collection, see Cosier & Glazer, (1986 ▶).

Experimental

Crystal data

C21H14OS M = 314.38 Orthorhombic, a = 5.5116 (1) Å b = 14.8497 (2) Å c = 18.3625 (3) Å V = 1502.89 (4) Å3 Z = 4 Mo Kα radiation μ = 0.22 mm−1 T = 100 K 0.50 × 0.19 × 0.11 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.900, T max = 0.977 14062 measured reflections 4354 independent reflections 4035 reflections with I > 2σ(I) R int = 0.025

Refinement

R[F 2 > 2σ(F 2)] = 0.042 wR(F 2) = 0.108 S = 1.05 4354 reflections 254 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.79 e Å−3 Δρmin = −0.62 e Å−3 Absolute structure: Flack (1983 ▶), 1830 Friedel pairs Flack parameter: 0.04 (8) Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810000061/sj2716sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810000061/sj2716Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C21H14OSDx = 1.390 Mg m3
Mr = 314.38Melting point = 400–401 K
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 4354 reflections
a = 5.5116 (1) Åθ = 1.8–30.0°
b = 14.8497 (2) ŵ = 0.22 mm1
c = 18.3625 (3) ÅT = 100 K
V = 1502.89 (4) Å3Block, yellow
Z = 40.50 × 0.19 × 0.11 mm
F(000) = 656
Bruker APEXII CCD area-detector diffractometer4354 independent reflections
Radiation source: sealed tube4035 reflections with I > 2σ(I)
graphiteRint = 0.025
φ and ω scansθmax = 30.0°, θmin = 1.8°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −7→5
Tmin = 0.900, Tmax = 0.977k = −17→20
14062 measured reflectionsl = −25→18
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.042H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.108w = 1/[σ2(Fo2) + (0.0502P)2 + 0.8977P] where P = (Fo2 + 2Fc2)/3
S = 1.05(Δ/σ)max = 0.001
4354 reflectionsΔρmax = 0.79 e Å3
254 parametersΔρmin = −0.62 e Å3
0 restraintsAbsolute structure: Flack (1983), 1830 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.04 (8)
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 120.0 (1) K.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.79023 (9)0.82740 (3)0.98167 (3)0.01920 (11)
O10.6379 (3)0.74101 (10)0.84157 (8)0.0208 (3)
C10.6215 (3)0.62511 (12)0.66251 (10)0.0142 (3)
C20.6199 (4)0.69201 (13)0.60656 (10)0.0176 (4)
H2A0.747 (4)0.7404 (15)0.6071 (12)0.019 (6)*
C30.4549 (4)0.68828 (13)0.55096 (10)0.0193 (4)
H3A0.459 (4)0.7304 (16)0.5132 (14)0.022 (6)*
C40.2761 (4)0.61930 (13)0.54827 (11)0.0198 (4)
H4A0.150 (5)0.6169 (17)0.5090 (13)0.026 (6)*
C50.2685 (4)0.55527 (13)0.60124 (10)0.0184 (4)
H5A0.155 (5)0.5111 (18)0.6021 (14)0.033 (7)*
C60.4394 (3)0.55565 (12)0.65992 (10)0.0146 (3)
C70.4332 (4)0.49043 (12)0.71450 (10)0.0169 (4)
H7A0.311 (4)0.4456 (14)0.7129 (11)0.010 (5)*
C80.6064 (4)0.48855 (12)0.76949 (10)0.0159 (4)
C90.6059 (4)0.41897 (13)0.82390 (11)0.0213 (4)
H9A0.479 (4)0.3744 (16)0.8218 (13)0.019 (6)*
C100.7811 (4)0.41528 (14)0.87607 (11)0.0240 (4)
H10A0.788 (5)0.3656 (16)0.9099 (13)0.022 (6)*
C110.9682 (4)0.48106 (15)0.87753 (11)0.0222 (4)
H11A1.103 (5)0.4744 (16)0.9123 (13)0.023 (6)*
C120.9731 (4)0.54951 (14)0.82813 (10)0.0189 (4)
H12A1.091 (5)0.5966 (17)0.8299 (13)0.027 (7)*
C130.7917 (4)0.55659 (12)0.77254 (9)0.0156 (3)
C140.7917 (3)0.62627 (12)0.72009 (9)0.0143 (3)
C150.9746 (4)0.69969 (13)0.72208 (10)0.0172 (4)
H15A1.077 (4)0.7024 (15)0.6807 (12)0.016 (6)*
C161.0028 (4)0.76158 (13)0.77411 (10)0.0178 (4)
H16A1.138 (5)0.8035 (17)0.7711 (13)0.026 (6)*
C170.8452 (3)0.77098 (12)0.83955 (10)0.0153 (3)
C180.9491 (3)0.82083 (12)0.90132 (9)0.0146 (3)
C191.1727 (3)0.86783 (12)0.90518 (10)0.0146 (2)
H19A1.28630.87140.86780.018*
C201.1971 (3)0.90888 (11)0.97520 (10)0.0146 (2)
H20A1.351 (5)0.9445 (17)0.9876 (14)0.031 (7)*
C211.0083 (4)0.89174 (13)1.02086 (11)0.0198 (4)
H21A0.993 (5)0.9095 (18)1.0753 (15)0.034 (7)*
U11U22U33U12U13U23
S10.0185 (2)0.0204 (2)0.0188 (2)−0.00094 (17)0.00214 (18)−0.00059 (18)
O10.0163 (6)0.0219 (7)0.0243 (7)−0.0038 (6)0.0037 (6)−0.0053 (6)
C10.0159 (8)0.0132 (8)0.0136 (8)0.0006 (7)0.0018 (6)−0.0028 (6)
C20.0200 (9)0.0167 (8)0.0162 (8)0.0000 (7)0.0013 (7)−0.0014 (7)
C30.0234 (9)0.0181 (9)0.0163 (8)0.0033 (7)−0.0002 (7)0.0009 (7)
C40.0211 (9)0.0210 (9)0.0174 (8)0.0038 (8)−0.0038 (8)−0.0049 (7)
C50.0182 (9)0.0167 (8)0.0204 (8)0.0001 (7)−0.0007 (8)−0.0057 (7)
C60.0140 (8)0.0143 (8)0.0155 (8)0.0007 (7)−0.0001 (7)−0.0056 (7)
C70.0187 (9)0.0131 (8)0.0188 (8)−0.0010 (7)0.0030 (7)−0.0038 (7)
C80.0192 (9)0.0142 (8)0.0143 (8)0.0023 (7)0.0050 (7)−0.0007 (7)
C90.0279 (11)0.0152 (9)0.0208 (9)0.0012 (8)0.0065 (8)0.0002 (7)
C100.0325 (11)0.0215 (9)0.0179 (8)0.0078 (9)0.0061 (9)0.0032 (7)
C110.0254 (10)0.0262 (10)0.0149 (8)0.0088 (9)0.0012 (8)0.0007 (8)
C120.0182 (9)0.0219 (9)0.0166 (8)0.0029 (8)0.0016 (7)−0.0013 (7)
C130.0164 (8)0.0170 (8)0.0133 (7)0.0038 (7)0.0036 (7)−0.0019 (6)
C140.0146 (7)0.0144 (8)0.0141 (7)0.0014 (7)0.0019 (7)−0.0028 (6)
C150.0163 (8)0.0213 (9)0.0141 (8)−0.0014 (7)0.0026 (7)0.0002 (7)
C160.0170 (9)0.0198 (9)0.0165 (8)−0.0033 (7)0.0013 (7)0.0000 (7)
C170.0173 (9)0.0118 (8)0.0167 (8)−0.0001 (7)0.0011 (7)−0.0010 (6)
C180.0161 (8)0.0151 (8)0.0125 (7)0.0021 (7)0.0022 (6)0.0003 (7)
C190.0125 (5)0.0149 (5)0.0164 (6)0.0005 (5)−0.0024 (5)−0.0019 (5)
C200.0125 (5)0.0149 (5)0.0164 (6)0.0005 (5)−0.0024 (5)−0.0019 (5)
C210.0243 (9)0.0190 (8)0.0161 (8)0.0040 (7)−0.0012 (8)−0.0017 (7)
S1—C211.696 (2)C9—H9A0.96 (3)
S1—C181.7184 (18)C10—C111.421 (3)
O1—C171.227 (2)C10—H10A0.97 (2)
C1—C141.414 (3)C11—C121.363 (3)
C1—C21.429 (3)C11—H11A0.98 (3)
C1—C61.440 (3)C12—C131.433 (3)
C2—C31.368 (3)C12—H12A0.96 (3)
C2—H2A1.00 (2)C13—C141.414 (2)
C3—C41.422 (3)C14—C151.485 (3)
C3—H3A0.93 (2)C15—C161.335 (3)
C4—C51.361 (3)C15—H15A0.95 (2)
C4—H4A1.00 (3)C16—C171.489 (3)
C5—C61.431 (3)C16—H16A0.97 (3)
C5—H5A0.91 (3)C17—C181.470 (3)
C6—C71.394 (3)C18—C191.418 (3)
C7—C81.390 (3)C19—C201.429 (2)
C7—H7A0.95 (2)C19—H19A0.9300
C8—C91.437 (3)C20—C211.360 (3)
C8—C131.438 (3)C20—H20A1.02 (3)
C9—C101.361 (3)C21—H21A1.04 (3)
C21—S1—C1892.02 (10)C12—C11—H11A119.5 (15)
C14—C1—C2122.21 (17)C10—C11—H11A119.4 (14)
C14—C1—C6119.73 (17)C11—C12—C13121.0 (2)
C2—C1—C6118.05 (17)C11—C12—H12A122.4 (16)
C3—C2—C1120.81 (18)C13—C12—H12A116.5 (16)
C3—C2—H2A120.0 (13)C14—C13—C12122.62 (18)
C1—C2—H2A119.1 (13)C14—C13—C8119.20 (17)
C2—C3—C4121.04 (18)C12—C13—C8118.16 (17)
C2—C3—H3A120.8 (15)C13—C14—C1120.04 (17)
C4—C3—H3A118.2 (15)C13—C14—C15121.37 (16)
C5—C4—C3119.99 (18)C1—C14—C15118.55 (16)
C5—C4—H4A118.0 (15)C16—C15—C14127.01 (17)
C3—C4—H4A122.0 (15)C16—C15—H15A118.3 (14)
C4—C5—C6120.99 (19)C14—C15—H15A114.7 (14)
C4—C5—H5A122.6 (17)C15—C16—C17125.05 (17)
C6—C5—H5A116.4 (17)C15—C16—H16A119.3 (15)
C7—C6—C5121.47 (17)C17—C16—H16A115.6 (15)
C7—C6—C1119.43 (17)O1—C17—C18121.46 (17)
C5—C6—C1119.10 (17)O1—C17—C16122.25 (17)
C8—C7—C6121.27 (17)C18—C17—C16116.26 (16)
C8—C7—H7A119.8 (13)C19—C18—C17128.65 (16)
C6—C7—H7A118.9 (13)C19—C18—S1111.83 (13)
C7—C8—C9121.21 (18)C17—C18—S1119.51 (14)
C7—C8—C13120.14 (17)C18—C19—C20109.67 (16)
C9—C8—C13118.65 (18)C18—C19—H19A125.2
C10—C9—C8121.1 (2)C20—C19—H19A125.2
C10—C9—H9A121.0 (14)C21—C20—C19113.75 (16)
C8—C9—H9A117.8 (14)C21—C20—H20A126.4 (15)
C9—C10—C11120.04 (18)C19—C20—H20A119.8 (15)
C9—C10—H10A120.8 (16)C20—C21—S1112.71 (15)
C11—C10—H10A119.0 (16)C20—C21—H21A127.5 (16)
C12—C11—C10121.0 (2)S1—C21—H21A119.7 (16)
C14—C1—C2—C3179.06 (17)C9—C8—C13—C122.5 (3)
C6—C1—C2—C3−2.1 (3)C12—C13—C14—C1174.11 (17)
C1—C2—C3—C41.7 (3)C8—C13—C14—C1−4.4 (3)
C2—C3—C4—C5−0.5 (3)C12—C13—C14—C15−3.3 (3)
C3—C4—C5—C6−0.4 (3)C8—C13—C14—C15178.18 (16)
C4—C5—C6—C7179.95 (18)C2—C1—C14—C13−177.53 (17)
C4—C5—C6—C10.0 (3)C6—C1—C14—C133.6 (3)
C14—C1—C6—C70.2 (3)C2—C1—C14—C150.0 (3)
C2—C1—C6—C7−178.75 (17)C6—C1—C14—C15−178.90 (16)
C14—C1—C6—C5−179.92 (16)C13—C14—C15—C16−64.2 (3)
C2—C1—C6—C51.2 (3)C1—C14—C15—C16118.4 (2)
C5—C6—C7—C8176.94 (17)C14—C15—C16—C17−2.9 (3)
C1—C6—C7—C8−3.1 (3)C15—C16—C17—O1−21.8 (3)
C6—C7—C8—C9−177.26 (17)C15—C16—C17—C18160.02 (19)
C6—C7—C8—C132.3 (3)O1—C17—C18—C19−172.54 (18)
C7—C8—C9—C10177.47 (19)C16—C17—C18—C195.7 (3)
C13—C8—C9—C10−2.1 (3)O1—C17—C18—S16.9 (2)
C8—C9—C10—C110.2 (3)C16—C17—C18—S1−174.86 (13)
C9—C10—C11—C121.3 (3)C21—S1—C18—C190.62 (15)
C10—C11—C12—C13−0.9 (3)C21—S1—C18—C17−178.93 (15)
C11—C12—C13—C14−179.56 (18)C17—C18—C19—C20178.21 (17)
C11—C12—C13—C8−1.0 (3)S1—C18—C19—C20−1.30 (19)
C7—C8—C13—C141.5 (3)C18—C19—C20—C211.5 (2)
C9—C8—C13—C14−178.92 (17)C19—C20—C21—S1−1.1 (2)
C7—C8—C13—C12−177.10 (17)C18—S1—C21—C200.27 (15)
Cg1, Cg2 and Cg3 are the centroids of the S1/C18–C21, C1–C6 and C8–C13 rings, respectively.
D—H···AD—HH···AD···AD—H···A
C5—H5A···Cg1i0.91 (3)2.64 (3)3.443 (2)149 (2)
C15—H15A···Cg2ii0.95 (2)2.74 (2)3.565 (2)146.4 (17)
C21—H21A···Cg3iii1.04 (3)2.91 (3)3.711 (2)134.4 (19)
Table 1

Hydrogen-bond geometry (Å, °)

Cg 1, Cg 2 and Cg 3 are the centroids of the S1/C18–C21, C1–C6 and C8–C13 rings, respectively.

D—H⋯AD—HH⋯ADAD—H⋯A
C5—H5ACg1i0.91 (3)2.64 (3)3.443 (2)149 (2)
C15—H15ACg2ii0.95 (2)2.74 (2)3.565 (2)146.4 (17)
C21—H21ACg3iii1.04 (3)2.91 (3)3.711 (2)134.4 (19)

Symmetry codes: (i) ; (ii) ; (iii) .

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Journal:  Leuk Res       Date:  2003-01       Impact factor: 3.156

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Dipolar relaxation in a lipid bilayer detected by a fluorescent probe, 4''-dimethylaminochalcone.

Authors:  V Yu Svetlichny; F Merola; G E Dobretsov; S K Gularyan; T I Syrejshchikova
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4.  (E)-1-(4-Bromo-phen-yl)-3-(2,4,6-trimethoxy-phen-yl)prop-2-en-1-one.

Authors:  Suchada Chantrapromma; Thitipone Suwunwong; Chatchanok Karalai; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-03-28

5.  (Z)-3-(9-Anthr-yl)-1-(2-thien-yl)prop-2-en-1-one.

Authors:  Hoong-Kun Fun; Thitipone Suwunwong; Nawong Boonnak; Suchada Chantrapromma
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-08-15

6.  (E)-3-(Anthracen-9-yl)-1-(4-bromo-phen-yl)prop-2-en-1-one.

Authors:  Thitipone Suwunwong; Suchada Chantrapromma; Chatchanok Karalai; Paradorn Pakdeevanich; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-01-31

7.  Structure validation in chemical crystallography.

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Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  7 in total
  4 in total

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-03-13

2.  (Z)-3-(Anthracen-9-yl)-1-(2-eth-oxy-phen-yl)prop-2-en-1-one.

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-09-30

3.  (E)-1-(4-Amino-phen-yl)-3-(2,4,5-trimeth-oxy-phen-yl)prop-2-en-1-one.

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4.  (2E)-1-(2-Hy-droxy-5-methyl-phen-yl)-3-(4-meth-oxy-phen-yl)prop-2-en-1-one.

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