Literature DB >> 21579721

2-[(Cyclo-penta-1,3-dien-2-yl)diphenyl-meth-yl]-1-methyl-1H-imidazole.

Qi Sun1, Wanli Nie, Maxim V Borzov.   

Abstract

The title compound, C(22)H(20)N(2), (Ib), forms along with 2-[(cyclo-penta-1,3-dien-1-yl)diphenyl-meth-yl]-1-methyl-1H-imid-azole, (Ia), which differs with respect to the position of the double-bonds in the C(5)H(5) ring, in an approximately 3:7 ratio (Ia:Ib; NMR spectroscopy data). However, in a single crystal, only compound (Ib) is present. H atoms of the CH(2) group (C(5)H(5) ring) were found from the difference Fourier synthesis and refined isotropically using the riding model. Hypothesis on possible presence of the (Ia) isomer in crystal lattice (model with a C(5)H(5) ring disordered between two positions) was especially checked and rejected due to its inconsistency. In the crystal structure, no significant hydrogen-bonding inter-actions between the CH(2) groups of the C(5)H(5) rings and nonsubstituted N-atoms of the imidazole rings were observed. Despite the fact that the chemically achiral compound (I) crystallizes in a chiral space group P2(1)2(1)2(1), neither the absolute structure determination nor assignment of the inversion twinning was possible in the absence of a heavy atom.

Entities:  

Year:  2010        PMID: 21579721      PMCID: PMC2979705          DOI: 10.1107/S1600536809055561

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the structural parameters of mono-alkyl substituted cyclo­penta­dienes (organic structures only), see: Tacke et al. (2001 ▶); Liebling & Marsh (1965 ▶); Haumann et al.(1996 ▶); Deck et al. (2004 ▶); Malpass et al. (2004 ▶); Cheung et al. (2005 ▶); Bauer et al. (2001 ▶); Huerlander et al. (2002 ▶); Millelr & Bercaw (2004 ▶); Li et al. (2005 ▶); Brunner et al. (2004 ▶); Otero et al. (2007 ▶); Hutton et al. (2008 ▶). For the structural parameters of 1,2-dialkyl-1H-imidazoles (organic structures only, not bi- or oligocyclic, non-ionic), see: Bruijnincx et al. (2005 ▶); Aakeroy et al. (2006 ▶); Zhang et al. (2007 ▶); Upadhyaya et al. (1997 ▶); Braussaud et al. (2001 ▶); Peters et al. (2005 ▶); Laus et al. (2008 ▶). For the structural parameters of Li, Ti, and Zr complexes derived from 1H-imidazol(in)-2-yl side-chain-functionalized cyclo­penta­dienes, see: Krut’ko et al. (2006 ▶); Nie et al. (2008 ▶); Wang et al. (2009 ▶). For a description of the Cambridge Structural database, see: Allen (2002 ▶).

Experimental

Crystal data

C22H20N2 M = 312.40 Orthorhombic, a = 10.563 (5) Å b = 10.603 (5) Å c = 15.185 (7) Å V = 1700.6 (14) Å3 Z = 4 Mo Kα radiation μ = 0.07 mm−1 T = 295 K 0.20 × 0.05 × 0.05 mm

Data collection

Bruker SMART APEXII diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.986, T max = 0.996 8785 measured reflections 1922 independent reflections 1543 reflections with I > 2σ(I) R int = 0.033

Refinement

R[F 2 > 2σ(F 2)] = 0.040 wR(F 2) = 0.120 S = 1.04 1922 reflections 218 parameters 5 restraints H-atom parameters constrained Δρmax = 0.27 e Å−3 Δρmin = −0.11 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶) and OLEX2 (Dolomanov et al., 2009 ▶); software used to prepare material for publication: SHELXTL and OLEX2. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809055561/dn2523sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809055561/dn2523Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C22H20N2F(000) = 664
Mr = 312.40Dx = 1.220 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 5639 reflections
a = 10.563 (5) Åθ = 2.3–28.0°
b = 10.603 (5) ŵ = 0.07 mm1
c = 15.185 (7) ÅT = 295 K
V = 1700.6 (14) Å3Prism, colorless
Z = 40.20 × 0.05 × 0.05 mm
Bruker SMART APEXII diffractometer1922 independent reflections
Radiation source: fine-focus sealed tube1543 reflections with I > 2σ(I)
graphiteRint = 0.033
Detector resolution: 8.333 pixels mm-1θmax = 26.0°, θmin = 2.3°
phi and ω scansh = −12→13
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)k = −13→13
Tmin = 0.986, Tmax = 0.996l = −10→18
8785 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.040Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.120H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.0736P)2 + 0.110P] where P = (Fo2 + 2Fc2)/3
1922 reflections(Δ/σ)max < 0.001
218 parametersΔρmax = 0.27 e Å3
5 restraintsΔρmin = −0.11 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.1464 (2)0.6352 (2)0.49551 (13)0.0578 (6)
N20.2989 (2)0.73895 (18)0.56444 (14)0.0588 (6)
C10.2381 (2)0.6304 (2)0.55926 (15)0.0460 (5)
C20.1512 (3)0.7552 (3)0.4606 (2)0.0725 (8)
H20.09960.78760.41640.087*
C30.2442 (3)0.8160 (3)0.5025 (2)0.0756 (9)
H30.26850.89870.49140.091*
C40.0623 (3)0.5371 (3)0.4627 (2)0.0785 (9)
H4C0.02740.49120.51150.118*
H4A0.10910.48050.42560.118*
H4B−0.00500.57490.42940.118*
C50.2651 (2)0.5151 (2)0.61653 (14)0.0412 (5)
C110.3890 (2)0.5365 (2)0.66661 (15)0.0457 (5)
C120.4947 (2)0.4661 (3)0.66347 (17)0.0561 (6)
H120.50630.39690.62670.067*
C130.5894 (3)0.5134 (3)0.7259 (2)0.0778 (8)
H13A0.66560.53950.69540.093*
H13B0.61130.44890.76860.093*
C140.5283 (3)0.6217 (3)0.76939 (19)0.0790 (8)
H140.56410.67190.81300.095*
C150.4055 (3)0.6363 (2)0.73309 (18)0.0616 (6)
H150.34640.69740.74840.074*
C210.1592 (2)0.4951 (2)0.68599 (14)0.0443 (5)
C220.0450 (2)0.5593 (3)0.68353 (18)0.0580 (7)
H220.03120.62080.64090.070*
C23−0.0488 (3)0.5321 (3)0.7443 (2)0.0754 (9)
H23−0.12530.57540.74200.090*
C24−0.0307 (3)0.4438 (3)0.8067 (2)0.0807 (10)
H24−0.09590.42370.84530.097*
C250.0844 (3)0.3828 (3)0.81354 (18)0.0688 (8)
H250.09800.32460.85840.083*
C260.1786 (3)0.4083 (2)0.75399 (16)0.0562 (6)
H260.25620.36750.75890.067*
C310.2772 (2)0.3977 (2)0.55630 (14)0.0430 (5)
C320.3568 (2)0.4048 (2)0.48296 (16)0.0537 (6)
H320.40360.47770.47280.064*
C330.3665 (3)0.3046 (3)0.42553 (18)0.0650 (7)
H330.41880.31120.37650.078*
C340.3004 (3)0.1959 (3)0.4395 (2)0.0713 (8)
H340.30820.12880.40040.086*
C350.2234 (3)0.1862 (3)0.5106 (2)0.0707 (8)
H350.17850.11200.52040.085*
C360.2110 (2)0.2860 (2)0.56874 (17)0.0536 (6)
H360.15750.27800.61700.064*
U11U22U33U12U13U23
N10.0615 (14)0.0586 (12)0.0533 (11)0.0116 (11)−0.0076 (11)0.0052 (11)
N20.0645 (14)0.0426 (10)0.0692 (13)−0.0012 (10)0.0033 (12)0.0092 (10)
C10.0457 (13)0.0445 (12)0.0479 (11)0.0063 (11)0.0039 (10)0.0027 (10)
C20.085 (2)0.0667 (17)0.0661 (16)0.0255 (17)−0.0024 (17)0.0166 (16)
C30.090 (2)0.0497 (14)0.087 (2)0.0101 (16)0.0023 (19)0.0205 (15)
C40.073 (2)0.082 (2)0.0800 (19)0.0081 (17)−0.0301 (17)−0.0082 (18)
C50.0389 (11)0.0402 (11)0.0445 (11)0.0008 (10)0.0002 (9)0.0015 (9)
C110.0440 (12)0.0439 (12)0.0491 (12)−0.0060 (10)0.0033 (10)0.0054 (11)
C120.0452 (13)0.0594 (14)0.0638 (14)0.0000 (12)−0.0020 (11)−0.0009 (12)
C130.0457 (13)0.103 (2)0.0843 (19)−0.0100 (13)−0.0138 (13)0.0156 (17)
C140.0928 (19)0.0814 (18)0.0630 (16)−0.0413 (15)−0.0177 (15)0.0016 (14)
C150.0736 (15)0.0530 (13)0.0584 (14)−0.0067 (13)0.0016 (13)−0.0091 (14)
C210.0438 (12)0.0425 (11)0.0467 (11)−0.0046 (10)0.0029 (10)−0.0078 (11)
C220.0454 (13)0.0666 (16)0.0621 (15)0.0010 (12)0.0014 (12)−0.0066 (15)
C230.0467 (14)0.095 (2)0.085 (2)−0.0048 (15)0.0135 (15)−0.017 (2)
C240.073 (2)0.092 (2)0.077 (2)−0.0333 (19)0.0245 (18)−0.0198 (19)
C250.083 (2)0.0648 (17)0.0583 (15)−0.0207 (16)0.0146 (15)0.0004 (14)
C260.0612 (15)0.0536 (13)0.0539 (13)−0.0056 (12)0.0048 (12)−0.0029 (12)
C310.0394 (11)0.0423 (11)0.0474 (11)0.0039 (10)−0.0033 (10)−0.0012 (9)
C320.0508 (14)0.0553 (13)0.0552 (13)0.0013 (12)0.0043 (12)−0.0002 (12)
C330.0619 (16)0.0782 (18)0.0550 (14)0.0102 (15)0.0035 (13)−0.0121 (15)
C340.0768 (19)0.0639 (17)0.0734 (18)0.0084 (16)−0.0021 (16)−0.0177 (16)
C350.081 (2)0.0531 (14)0.0779 (18)−0.0053 (15)−0.0032 (18)−0.0113 (14)
C360.0538 (14)0.0488 (13)0.0583 (14)−0.0027 (11)0.0019 (13)−0.0059 (11)
N1—C11.370 (3)C15—H150.9300
N1—C21.380 (3)C21—C221.386 (3)
N1—C41.456 (4)C21—C261.398 (3)
N2—C11.321 (3)C22—C231.384 (4)
N2—C31.373 (3)C22—H220.9300
C1—C51.527 (3)C23—C241.346 (5)
C2—C31.336 (4)C23—H230.9300
C2—H20.9300C24—C251.381 (5)
C3—H30.9300C24—H240.9300
C4—H4C0.9600C25—C261.372 (4)
C4—H4A0.9600C25—H250.9300
C4—H4B0.9600C26—H260.9300
C5—C111.530 (3)C31—C361.388 (3)
C5—C311.550 (3)C31—C321.398 (3)
C5—C211.552 (3)C32—C331.378 (3)
C11—C121.344 (3)C32—H320.9300
C11—C151.473 (3)C33—C341.364 (4)
C12—C131.466 (4)C33—H330.9300
C12—H120.9300C34—C351.357 (4)
C13—C141.474 (5)C34—H340.9300
C13—H13A0.9700C35—C361.384 (4)
C13—H13B0.9700C35—H350.9300
C14—C151.417 (4)C36—H360.9300
C14—H140.9300
C1—N1—C2106.3 (2)C14—C15—C11107.3 (3)
C1—N1—C4130.2 (2)C14—C15—H15126.4
C2—N1—C4123.4 (2)C11—C15—H15126.4
C1—N2—C3105.8 (2)C22—C21—C26118.1 (2)
N2—C1—N1110.7 (2)C22—C21—C5122.9 (2)
N2—C1—C5124.9 (2)C26—C21—C5119.1 (2)
N1—C1—C5124.4 (2)C23—C22—C21120.2 (3)
C3—C2—N1106.8 (3)C23—C22—H22119.9
C3—C2—H2126.6C21—C22—H22119.9
N1—C2—H2126.6C24—C23—C22120.8 (3)
C2—C3—N2110.5 (3)C24—C23—H23119.6
C2—C3—H3124.8C22—C23—H23119.6
N2—C3—H3124.8C23—C24—C25120.3 (3)
N1—C4—H4C109.5C23—C24—H24119.8
N1—C4—H4A109.5C25—C24—H24119.8
H4C—C4—H4A109.5C26—C25—C24119.8 (3)
N1—C4—H4B109.5C26—C25—H25120.1
H4C—C4—H4B109.5C24—C25—H25120.1
H4A—C4—H4B109.5C25—C26—C21120.7 (3)
C1—C5—C11108.92 (18)C25—C26—H26119.7
C1—C5—C31108.80 (16)C21—C26—H26119.7
C11—C5—C31110.03 (17)C36—C31—C32117.2 (2)
C1—C5—C21111.18 (18)C36—C31—C5124.3 (2)
C11—C5—C21107.37 (17)C32—C31—C5118.42 (19)
C31—C5—C21110.53 (17)C33—C32—C31120.4 (2)
C12—C11—C15108.9 (2)C33—C32—H32119.8
C12—C11—C5127.6 (2)C31—C32—H32119.8
C15—C11—C5123.3 (2)C34—C33—C32121.0 (3)
C11—C12—C13110.7 (3)C34—C33—H33119.5
C11—C12—H12124.6C32—C33—H33119.5
C13—C12—H12124.6C35—C34—C33119.7 (3)
C12—C13—C14104.9 (2)C35—C34—H34120.2
C12—C13—H13A110.8C33—C34—H34120.2
C14—C13—H13A110.8C34—C35—C36120.4 (3)
C12—C13—H13B110.8C34—C35—H35119.8
C14—C13—H13B110.8C36—C35—H35119.8
H13A—C13—H13B108.8C35—C36—C31121.2 (2)
C15—C14—C13108.1 (2)C35—C36—H36119.4
C15—C14—H14125.9C31—C36—H36119.4
C13—C14—H14125.9
C3—N2—C1—N10.3 (3)C1—C5—C21—C2211.7 (3)
C3—N2—C1—C5−179.4 (2)C11—C5—C21—C22130.7 (2)
C2—N1—C1—N2−0.8 (3)C31—C5—C21—C22−109.2 (2)
C4—N1—C1—N2175.5 (3)C1—C5—C21—C26−168.7 (2)
C2—N1—C1—C5178.9 (2)C11—C5—C21—C26−49.7 (2)
C4—N1—C1—C5−4.8 (4)C31—C5—C21—C2670.3 (2)
C1—N1—C2—C30.9 (3)C26—C21—C22—C23−3.4 (4)
C4—N1—C2—C3−175.7 (3)C5—C21—C22—C23176.2 (2)
N1—C2—C3—N2−0.7 (3)C21—C22—C23—C240.2 (4)
C1—N2—C3—C20.2 (3)C22—C23—C24—C253.0 (5)
N2—C1—C5—C11−11.2 (3)C23—C24—C25—C26−3.0 (4)
N1—C1—C5—C11169.1 (2)C24—C25—C26—C21−0.3 (4)
N2—C1—C5—C31−131.2 (2)C22—C21—C26—C253.5 (3)
N1—C1—C5—C3149.2 (3)C5—C21—C26—C25−176.1 (2)
N2—C1—C5—C21106.9 (3)C1—C5—C31—C36−128.3 (2)
N1—C1—C5—C21−72.8 (2)C11—C5—C31—C36112.4 (2)
C1—C5—C11—C12−120.6 (3)C21—C5—C31—C36−6.0 (3)
C31—C5—C11—C12−1.5 (3)C1—C5—C31—C3249.8 (3)
C21—C5—C11—C12118.9 (3)C11—C5—C31—C32−69.5 (2)
C1—C5—C11—C1564.5 (3)C21—C5—C31—C32172.10 (19)
C31—C5—C11—C15−176.32 (19)C36—C31—C32—C330.9 (3)
C21—C5—C11—C15−56.0 (3)C5—C31—C32—C33−177.3 (2)
C15—C11—C12—C13−0.6 (3)C31—C32—C33—C34−1.0 (4)
C5—C11—C12—C13−176.1 (2)C32—C33—C34—C350.4 (5)
C11—C12—C13—C140.7 (3)C33—C34—C35—C360.3 (5)
C12—C13—C14—C15−0.5 (3)C34—C35—C36—C31−0.4 (4)
C13—C14—C15—C110.1 (3)C32—C31—C36—C35−0.2 (4)
C12—C11—C15—C140.3 (3)C5—C31—C36—C35177.9 (2)
C5—C11—C15—C14176.0 (2)
  5 in total

1.  The Cambridge Structural Database: a quarter of a million crystal structures and rising.

Authors:  Frank H Allen
Journal:  Acta Crystallogr B       Date:  2002-05-29

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Synthesis and structural characterization of mono- and bisfunctional o-carboranes.

Authors:  Mak-Shuen Cheung; Hoi-Shan Chan; Zuowei Xie
Journal:  Dalton Trans       Date:  2005-06-09       Impact factor: 4.390

4.  Unprecedented steric deformation of ortho-carborane.

Authors:  Brian W Hutton; Fraser MacIntosh; David Ellis; Fabien Herisse; Stuart A Macgregor; David McKay; Victoria Petrie-Armstrong; Georgina M Rosair; Dmitry S Perekalin; Hugo Tricas; Alan J Welch
Journal:  Chem Commun (Camb)       Date:  2008-09-19       Impact factor: 6.222

5.  Two 18ē Ti(IV) eta5-Cp-tris(sec-amido)-type complexes derived from 1H-imidazol-2-yl side-chain functionalized cyclopentadienes.

Authors:  Xiaowu Wang; Wanli Nie; Fang Ge; Maxim V Borzov
Journal:  Acta Crystallogr C       Date:  2009-06-20       Impact factor: 1.172

  5 in total
  2 in total

1.  2-{(E)-N-[2-(1H-Inden-3-yl)eth-yl]imino-meth-yl}-1H-imidazole.

Authors:  Zhao Li; Chong Tian; Wanli Nie; Maxim V Borzov
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-04-16

2.  {2-[(η-Cyclo-penta-dien-yl)diphenyl-meth-yl]-1H-imidazolido-κN}bis-(N,N-diethyl-amido)-titanium(IV).

Authors:  Xianfeng Cai; Yingying Xu; Wanli Nie; Maxim V Borzov
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-04-07
  2 in total

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