Literature DB >> 21579708

A monoclinic polymorph of 1-(4-chloro-phen-yl)-3-(4-methoxy-phen-yl)prop-2-en-1-one.

Jerry P Jasinski, Ray J Butcher, B Narayana, S Samshuddin, H S Yathirajan.   

Abstract

The crystal structure of the title compound, C(16)H(13)ClO(2) (II), (space group P2(1)/c,) is a polymorph of the structure, (I), reported by Harrison, Yathirajan, Sarojini, Narayana & Indira [Acta Cryst. (2006), E62, o1647-o1649] in the ortho-rhom-bic space group Pna2(1). The dihedral angle between the mean planes of the 4-chloro- and 4-meth-oxy-substituted benzene rings is 52.9 (1)° in (II) compared to 21.82 (6)° for polymorph (I). The dihedral angles between the mean planes of the prop-2-en-1-one group and those of the 4-chloro-phenyl and 4-methoxy-phenyl rings are 23.3 (3) and 33.7 (1)°, respectively. in (II). The corresponding values are 17.7 (1) and 6.0 (3)°, respectively, in polymorph (I). In the crystal, weak C-H⋯π inter-actions are observed.

Entities:  

Year:  2010        PMID: 21579708      PMCID: PMC2979778          DOI: 10.1107/S1600536809054956

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the orthorhomic polymorph, see: Harrison et al. (2006 ▶). For the biological activity of chalcones and flavonoids, see: Dimmock et al. (1999 ▶); Opletalova & Sedivy (1999 ▶); Lin et al. (2002 ▶); Nowakowska (2007 ▶). For the synthesis and biological activity of some fluorinated chalcone derivatives, see: Nakamura et al. (2002 ▶). For non-linear optical studies of chalcones and their derivatives, see: Sarojini et al. (2006 ▶); Poornesh et al. (2009 ▶); Shettigar et al. (2006 ▶, 2008 ▶). For our studies of chalcones, see: Jasinski et al. (2009 ▶).

Experimental

Crystal data

C16H13ClO2 M = 272.71 Monoclinic, a = 15.6695 (7) Å b = 14.1235 (8) Å c = 5.8455 (3) Å β = 90.771 (5)° V = 1293.53 (12) Å3 Z = 4 Cu Kα radiation μ = 2.57 mm−1 T = 110 K 0.54 × 0.13 × 0.08 mm

Data collection

Oxford Diffraction Xcalibur diffractometer with a Ruby (Gemini Cu) detector Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2007 ▶) T min = 0.483, T max = 0.558 5083 measured reflections 2537 independent reflections 2223 reflections with I > 2σ(I) R int = 0.021

Refinement

R[F 2 > 2σ(F 2)] = 0.035 wR(F 2) = 0.096 S = 1.04 2537 reflections 173 parameters H-atom parameters constrained Δρmax = 0.25 e Å−3 Δρmin = −0.22 e Å−3 Data collection: CrysAlis PRO (Oxford Diffraction, 2007 ▶); cell refinement: CrysAlis RED (Oxford Diffraction, 2007 ▶); data reduction: CrysAlis RED; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809054956/om2306sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809054956/om2306Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H13ClO2F(000) = 568
Mr = 272.71Dx = 1.400 Mg m3
Monoclinic, P21/cCu Kα radiation, λ = 1.54184 Å
Hall symbol: -P 2ybcCell parameters from 3121 reflections
a = 15.6695 (7) Åθ = 4.2–73.8°
b = 14.1235 (8) ŵ = 2.57 mm1
c = 5.8455 (3) ÅT = 110 K
β = 90.771 (5)°Needle, colorless
V = 1293.53 (12) Å30.54 × 0.13 × 0.08 mm
Z = 4
Oxford Diffraction Xcalibur diffractometer with a Ruby (Gemini Cu) detector2537 independent reflections
Radiation source: Enhance (Cu) X-ray Source2223 reflections with I > 2σ(I)
graphiteRint = 0.021
Detector resolution: 10.5081 pixels mm-1θmax = 74.0°, θmin = 4.2°
ω scansh = −19→17
Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2007)k = −16→17
Tmin = 0.483, Tmax = 0.558l = −5→7
5083 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.035Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.096H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.0574P)2 + 0.4041P] where P = (Fo2 + 2Fc2)/3
2537 reflections(Δ/σ)max = 0.001
173 parametersΔρmax = 0.25 e Å3
0 restraintsΔρmin = −0.22 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.84683 (2)0.61936 (3)0.17788 (6)0.02523 (13)
O10.47093 (7)0.63259 (9)0.70069 (19)0.0289 (3)
O20.01821 (7)0.61488 (8)−0.07719 (19)0.0241 (3)
C10.57310 (9)0.62821 (10)0.4074 (3)0.0181 (3)
C20.63878 (9)0.66090 (10)0.5520 (2)0.0188 (3)
H20.62550.68490.69900.023*
C30.72286 (9)0.65859 (10)0.4828 (3)0.0198 (3)
H30.76720.68170.58000.024*
C40.74128 (9)0.62174 (10)0.2682 (3)0.0193 (3)
C50.67775 (10)0.58747 (11)0.1233 (3)0.0205 (3)
H50.69160.5612−0.02120.025*
C60.59317 (9)0.59211 (11)0.1929 (3)0.0202 (3)
H60.54890.57050.09340.024*
C70.48352 (9)0.63066 (10)0.4945 (3)0.0200 (3)
C80.41225 (9)0.63059 (11)0.3255 (3)0.0211 (3)
H80.42230.64670.17040.025*
C90.33359 (9)0.60773 (11)0.3930 (3)0.0200 (3)
H90.32840.58850.54790.024*
C100.25468 (9)0.60893 (10)0.2562 (3)0.0181 (3)
C110.24715 (9)0.65496 (11)0.0440 (3)0.0202 (3)
H110.29600.6839−0.02060.024*
C120.16938 (9)0.65893 (11)−0.0730 (3)0.0200 (3)
H120.16480.6915−0.21490.024*
C130.09809 (9)0.61476 (10)0.0193 (3)0.0187 (3)
C140.10492 (9)0.56679 (11)0.2274 (3)0.0202 (3)
H140.05670.53540.28820.024*
C150.18181 (9)0.56513 (11)0.3443 (2)0.0199 (3)
H150.18560.53360.48770.024*
C160.00342 (10)0.67344 (13)−0.2722 (3)0.0263 (3)
H16A0.01400.7397−0.23110.039*
H16B−0.05590.6662−0.32480.039*
H16C0.04200.6547−0.39480.039*
U11U22U33U12U13U23
Cl10.0180 (2)0.0276 (2)0.0302 (2)0.00214 (13)0.00556 (14)0.00128 (15)
O10.0214 (6)0.0441 (7)0.0212 (6)−0.0035 (5)0.0006 (4)0.0008 (5)
O20.0158 (5)0.0266 (6)0.0298 (6)−0.0025 (4)−0.0041 (4)0.0048 (5)
C10.0174 (7)0.0170 (7)0.0198 (7)−0.0009 (5)−0.0019 (5)0.0039 (6)
C20.0197 (7)0.0188 (7)0.0180 (7)0.0019 (5)−0.0009 (5)−0.0002 (6)
C30.0185 (7)0.0188 (7)0.0221 (7)0.0000 (5)−0.0031 (5)−0.0009 (6)
C40.0167 (7)0.0172 (7)0.0239 (7)0.0018 (5)0.0022 (6)0.0034 (6)
C50.0251 (7)0.0189 (7)0.0176 (7)0.0019 (6)0.0016 (6)−0.0002 (5)
C60.0194 (7)0.0206 (7)0.0206 (7)−0.0015 (5)−0.0038 (5)0.0008 (6)
C70.0196 (7)0.0193 (7)0.0212 (7)−0.0006 (5)−0.0008 (6)0.0012 (6)
C80.0178 (7)0.0248 (8)0.0207 (7)0.0005 (6)0.0000 (6)0.0021 (6)
C90.0206 (7)0.0189 (7)0.0204 (7)0.0017 (5)−0.0001 (6)0.0010 (6)
C100.0167 (7)0.0170 (7)0.0207 (7)0.0023 (5)0.0015 (5)−0.0012 (6)
C110.0164 (7)0.0222 (7)0.0220 (7)−0.0007 (5)0.0032 (5)0.0011 (6)
C120.0195 (7)0.0215 (8)0.0190 (7)0.0001 (6)0.0012 (5)0.0008 (6)
C130.0161 (7)0.0171 (7)0.0228 (7)0.0009 (5)−0.0013 (5)−0.0033 (6)
C140.0177 (7)0.0187 (7)0.0245 (7)−0.0015 (5)0.0039 (5)0.0012 (6)
C150.0212 (7)0.0186 (7)0.0201 (7)0.0016 (6)0.0030 (5)0.0015 (6)
C160.0213 (7)0.0341 (9)0.0235 (8)0.0027 (6)−0.0036 (6)0.0014 (7)
Cl1—C41.7431 (15)C8—H80.9500
O1—C71.2240 (19)C9—C101.464 (2)
O2—C131.3659 (18)C9—H90.9500
O2—C161.4248 (19)C10—C151.403 (2)
C1—C61.394 (2)C10—C111.404 (2)
C1—C21.401 (2)C11—C121.391 (2)
C1—C71.500 (2)C11—H110.9500
C2—C31.384 (2)C12—C131.395 (2)
C2—H20.9500C12—H120.9500
C3—C41.392 (2)C13—C141.395 (2)
C3—H30.9500C14—C151.377 (2)
C4—C51.386 (2)C14—H140.9500
C5—C61.393 (2)C15—H150.9500
C5—H50.9500C16—H16A0.9800
C6—H60.9500C16—H16B0.9800
C7—C81.481 (2)C16—H16C0.9800
C8—C91.339 (2)
C13—O2—C16118.00 (12)C8—C9—H9116.2
C6—C1—C2119.36 (14)C10—C9—H9116.2
C6—C1—C7122.52 (13)C15—C10—C11118.00 (13)
C2—C1—C7118.09 (13)C15—C10—C9118.70 (14)
C3—C2—C1120.69 (14)C11—C10—C9123.25 (13)
C3—C2—H2119.7C12—C11—C10121.06 (13)
C1—C2—H2119.7C12—C11—H11119.5
C2—C3—C4118.82 (13)C10—C11—H11119.5
C2—C3—H3120.6C11—C12—C13119.52 (14)
C4—C3—H3120.6C11—C12—H12120.2
C5—C4—C3121.70 (14)C13—C12—H12120.2
C5—C4—Cl1119.01 (12)O2—C13—C12125.02 (13)
C3—C4—Cl1119.29 (11)O2—C13—C14114.83 (13)
C4—C5—C6118.91 (14)C12—C13—C14120.15 (13)
C4—C5—H5120.5C15—C14—C13119.82 (14)
C6—C5—H5120.5C15—C14—H14120.1
C5—C6—C1120.48 (13)C13—C14—H14120.1
C5—C6—H6119.8C14—C15—C10121.41 (14)
C1—C6—H6119.8C14—C15—H15119.3
O1—C7—C8121.77 (14)C10—C15—H15119.3
O1—C7—C1119.92 (13)O2—C16—H16A109.5
C8—C7—C1118.31 (13)O2—C16—H16B109.5
C9—C8—C7119.51 (14)H16A—C16—H16B109.5
C9—C8—H8120.2O2—C16—H16C109.5
C7—C8—H8120.2H16A—C16—H16C109.5
C8—C9—C10127.64 (14)H16B—C16—H16C109.5
C6—C1—C2—C30.7 (2)C7—C8—C9—C10176.11 (14)
C7—C1—C2—C3178.69 (13)C8—C9—C10—C15167.66 (15)
C1—C2—C3—C4−1.0 (2)C8—C9—C10—C11−14.8 (2)
C2—C3—C4—C5−0.1 (2)C15—C10—C11—C121.4 (2)
C2—C3—C4—Cl1179.45 (11)C9—C10—C11—C12−176.08 (14)
C3—C4—C5—C61.4 (2)C10—C11—C12—C13−1.4 (2)
Cl1—C4—C5—C6−178.06 (11)C16—O2—C13—C12−7.9 (2)
C4—C5—C6—C1−1.8 (2)C16—O2—C13—C14171.26 (13)
C2—C1—C6—C50.7 (2)C11—C12—C13—O2178.95 (14)
C7—C1—C6—C5−177.17 (14)C11—C12—C13—C14−0.2 (2)
C6—C1—C7—O1155.92 (15)O2—C13—C14—C15−177.58 (13)
C2—C1—C7—O1−22.0 (2)C12—C13—C14—C151.6 (2)
C6—C1—C7—C8−24.0 (2)C13—C14—C15—C10−1.6 (2)
C2—C1—C7—C8158.05 (14)C11—C10—C15—C140.0 (2)
O1—C7—C8—C9−17.5 (2)C9—C10—C15—C14177.68 (13)
C1—C7—C8—C9162.41 (14)
Cg1 and Cg2 are the centroids of the C1–C6 and C10–C15 rings, respectively.
D—H···AD—HH···AD···AD—H···A
C9—H9···O10.952.472.8080 (19)101
C2—H2···Cg1i0.952.853.4675 (15)124
C12—H12···Cg2ii0.952.923.6616 (17)136
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 and Cg2 are the centroids of the C1–C6 and C10–C15 rings, respectively.

D—H⋯AD—HH⋯ADAD—H⋯A
C2—H2⋯Cg1i0.952.853.4675 (15)124
C12—H12⋯Cg2ii0.952.923.6616 (17)136

Symmetry codes: (i) ; (ii) .

  6 in total

Review 1.  Bioactivities of chalcones.

Authors:  J R Dimmock; D W Elias; M A Beazely; N M Kandepu
Journal:  Curr Med Chem       Date:  1999-12       Impact factor: 4.530

Review 2.  A review of anti-infective and anti-inflammatory chalcones.

Authors:  Zdzisława Nowakowska
Journal:  Eur J Med Chem       Date:  2006-11-15       Impact factor: 6.514

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

Review 4.  [Chalcones and their heterocyclic analogs as potential antifungal chemotherapeutic agents].

Authors:  V Opletalová; D Sedivý
Journal:  Ceska Slov Farm       Date:  1999-11

5.  Synthesis and biological activities of fluorinated chalcone derivatives.

Authors:  Chika Nakamura; Nobuhide Kawasaki; Hideki Miyataka; Ezhuthachan Jayachandran; In Ho Kim; Kenneth L Kirk; Takeo Taguchi; Yoshio Takeuchi; Hitoshi Hori; Toshio Satoh
Journal:  Bioorg Med Chem       Date:  2002-03       Impact factor: 3.641

6.  Chalcones and flavonoids as anti-tuberculosis agents.

Authors:  Yuh-Meei Lin; Yasheen Zhou; Michael T Flavin; Li-Ming Zhou; Weiguo Nie; Fa-Ching Chen
Journal:  Bioorg Med Chem       Date:  2002-08       Impact factor: 3.641

  6 in total
  2 in total

1.  (E)-3-(3-Chloro-phen-yl)-1-(4-methoxy-phen-yl)prop-2-en-1-one.

Authors:  Naveed Ahmad; Hamid Latif Siddiqui; Muhammad Zia-Ur-Rehman; Masood Parvez
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-05-15

2.  (E)-3-(4-Meth-oxy-phen-yl)-1-[4-(piperidin-1-yl)phen-yl]prop-2-en-1-one.

Authors:  Jerry P Jasinski; Curtis J Guild; B Narayana; Prakash S Nayak; H S Yathirajan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-07-14
  2 in total

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