| Literature DB >> 21579599 |
Mohammad T M Al-Dajani, Hassan H Abdallah, Nornisah Mohamed, Chin Sing Yeap, Hoong-Kun Fun.
Abstract
The asymmetric unit of the title compound, (CH(6)N(3))(2)[Zn(2)(C(6)H(5)O(7))(2)(H(2)O)(2)]·2H(2)O, contains one-half of a centrosymmetric dizinc(II) complex anion, one guanidinium cation and one water mol-ecule. Each Zn(II) ion is hexa-coordinated by two citrate anions, one in a bidentate fashion and the second monodentate, and two water mol-ecules in a distorted octa-hedral geometry. Intra-molecular O-H⋯O hydrogen bonds add further stability to the mol-ecular structure. In the crystal structure, mol-ecules are linked into a three-dimensional framework by inter-molecular N-H⋯O, O-H⋯O and C-H⋯O hydrogen bonds.Entities:
Year: 2010 PMID: 21579599 PMCID: PMC2979955 DOI: 10.1107/S1600536809054439
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| (CH6N3)2[Zn2(C6H5O7)2(H2O)2]·2H2O | |
| Monoclinic, | Mo |
| Hall symbol: -C 2yc | Cell parameters from 9983 reflections |
| θ = 2.5–34.8° | |
| µ = 1.81 mm−1 | |
| β = 95.249 (1)° | Block, colourless |
| 0.32 × 0.30 × 0.18 mm | |
| Bruker SMART APEXII CCD area-detector diffractometer | 7693 independent reflections |
| Radiation source: fine-focus sealed tube | 5495 reflections with |
| graphite | |
| φ and ω scans | θmax = 38.3°, θmin = 2.5° |
| Absorption correction: multi-scan ( | |
| 32332 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 7693 reflections | (Δ/σ)max = 0.002 |
| 190 parameters | Δρmax = 0.45 e Å−3 |
| 0 restraints | Δρmin = −0.29 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Zn1 | 0.322092 (4) | 0.394890 (14) | 0.631912 (11) | 0.02481 (4) | |
| O1 | 0.33231 (4) | 0.37163 (9) | 0.45220 (8) | 0.03439 (19) | |
| O2 | 0.36716 (3) | 0.20991 (10) | 0.33603 (8) | 0.03573 (18) | |
| O3 | 0.31089 (3) | 0.15045 (9) | 0.60117 (7) | 0.02494 (14) | |
| H1O3 | 0.2815 | 0.1428 | 0.5651 | 0.037* | |
| O4 | 0.39328 (3) | 0.33281 (11) | 0.66307 (9) | 0.03675 (19) | |
| O5 | 0.44700 (3) | 0.16069 (13) | 0.72462 (10) | 0.0474 (2) | |
| O6 | 0.24882 (3) | 0.07623 (10) | 0.42434 (9) | 0.0365 (2) | |
| O7 | 0.25557 (3) | −0.16794 (10) | 0.36365 (10) | 0.0427 (2) | |
| C1 | 0.34724 (4) | 0.23880 (12) | 0.42612 (9) | 0.02427 (18) | |
| C2 | 0.34175 (3) | 0.10406 (10) | 0.51507 (9) | 0.02214 (16) | |
| C3 | 0.38848 (4) | 0.06848 (13) | 0.58412 (10) | 0.0288 (2) | |
| H3A | 0.3844 | −0.0221 | 0.6334 | 0.035* | |
| H3B | 0.4101 | 0.0393 | 0.5275 | 0.035* | |
| C4 | 0.41101 (4) | 0.19654 (14) | 0.66293 (10) | 0.0295 (2) | |
| C5 | 0.32367 (4) | −0.04392 (12) | 0.44989 (10) | 0.0273 (2) | |
| H5A | 0.3410 | −0.0586 | 0.3814 | 0.033* | |
| H5B | 0.3302 | −0.1325 | 0.5020 | 0.033* | |
| C6 | 0.27248 (4) | −0.04513 (12) | 0.40863 (10) | 0.02705 (19) | |
| C7 | 0.45073 (5) | 0.64963 (16) | 0.50364 (12) | 0.0382 (3) | |
| N1 | 0.45132 (5) | 0.61025 (16) | 0.61676 (12) | 0.0511 (3) | |
| H1N1 | 0.4644 | 0.6641 | 0.6751 | 0.061* | |
| H2N1 | 0.4393 | 0.5187 | 0.6424 | 0.061* | |
| N2 | 0.47821 (5) | 0.76043 (17) | 0.47097 (13) | 0.0552 (3) | |
| H1N2 | 0.4783 | 0.7888 | 0.3966 | 0.066* | |
| H2N2 | 0.5000 | 0.7945 | 0.5235 | 0.066* | |
| N3 | 0.42259 (5) | 0.57429 (17) | 0.42351 (13) | 0.0547 (3) | |
| H1N3 | 0.4208 | 0.6209 | 0.3559 | 0.066* | |
| H2N3 | 0.4020 | 0.5135 | 0.4454 | 0.066* | |
| O1W | 0.46013 (4) | 0.85648 (15) | 0.82510 (11) | 0.0525 (3) | |
| H1W1 | 0.4335 | 0.8373 | 0.8306 | 0.079* | |
| H2W1 | 0.4593 | 0.9470 | 0.8020 | 0.079* | |
| O2W | 0.31354 (4) | 0.38177 (10) | 0.80498 (8) | 0.0388 (2) | |
| H1W2 | 0.3163 | 0.4610 | 0.8492 | 0.058* | |
| H2W2 | 0.2975 | 0.3236 | 0.8321 | 0.058* | |
| O3W | 0.33513 (3) | 0.63182 (9) | 0.63707 (8) | 0.03042 (16) | |
| H1W3 | 0.3494 | 0.6661 | 0.7004 | 0.046* | |
| H2W3 | 0.3106 | 0.6561 | 0.6328 | 0.046* |
| Zn1 | 0.02665 (6) | 0.02218 (6) | 0.02509 (7) | 0.00090 (4) | −0.00047 (4) | −0.00195 (4) |
| O1 | 0.0534 (5) | 0.0230 (3) | 0.0269 (4) | 0.0080 (3) | 0.0047 (4) | 0.0038 (3) |
| O2 | 0.0384 (4) | 0.0412 (4) | 0.0285 (4) | 0.0094 (4) | 0.0079 (3) | 0.0043 (3) |
| O3 | 0.0251 (3) | 0.0245 (3) | 0.0252 (3) | −0.0002 (3) | 0.0025 (3) | −0.0024 (3) |
| O4 | 0.0276 (4) | 0.0324 (4) | 0.0490 (5) | −0.0006 (3) | −0.0035 (3) | −0.0064 (4) |
| O5 | 0.0344 (5) | 0.0509 (6) | 0.0527 (6) | 0.0026 (4) | −0.0192 (4) | −0.0009 (5) |
| O6 | 0.0275 (4) | 0.0277 (4) | 0.0521 (5) | 0.0073 (3) | −0.0089 (4) | −0.0145 (4) |
| O7 | 0.0306 (4) | 0.0291 (4) | 0.0666 (7) | 0.0027 (3) | −0.0057 (4) | −0.0205 (4) |
| C1 | 0.0243 (4) | 0.0252 (4) | 0.0226 (4) | 0.0018 (3) | −0.0016 (3) | 0.0015 (3) |
| C2 | 0.0221 (4) | 0.0207 (4) | 0.0231 (4) | 0.0036 (3) | −0.0010 (3) | −0.0007 (3) |
| C3 | 0.0259 (5) | 0.0282 (4) | 0.0307 (5) | 0.0052 (4) | −0.0055 (4) | 0.0016 (4) |
| C4 | 0.0226 (4) | 0.0355 (5) | 0.0298 (5) | −0.0006 (4) | −0.0011 (4) | 0.0022 (4) |
| C5 | 0.0246 (4) | 0.0220 (4) | 0.0345 (5) | 0.0042 (3) | −0.0010 (4) | −0.0040 (4) |
| C6 | 0.0262 (4) | 0.0242 (4) | 0.0302 (5) | 0.0032 (4) | −0.0005 (4) | −0.0051 (4) |
| C7 | 0.0341 (6) | 0.0395 (6) | 0.0399 (7) | −0.0022 (5) | −0.0028 (5) | 0.0025 (5) |
| N1 | 0.0547 (8) | 0.0579 (8) | 0.0388 (7) | −0.0176 (6) | −0.0058 (6) | 0.0040 (5) |
| N2 | 0.0531 (7) | 0.0576 (8) | 0.0534 (8) | −0.0190 (6) | −0.0043 (6) | 0.0139 (6) |
| N3 | 0.0586 (8) | 0.0594 (8) | 0.0436 (7) | −0.0202 (7) | −0.0091 (6) | 0.0033 (6) |
| O1W | 0.0347 (5) | 0.0645 (7) | 0.0585 (7) | 0.0026 (5) | 0.0055 (5) | 0.0105 (6) |
| O2W | 0.0571 (6) | 0.0320 (4) | 0.0284 (4) | −0.0179 (4) | 0.0093 (4) | −0.0048 (3) |
| O3W | 0.0321 (4) | 0.0257 (3) | 0.0332 (4) | −0.0030 (3) | 0.0009 (3) | −0.0003 (3) |
| Zn1—O2W | 2.0036 (9) | C3—H3B | 0.9700 |
| Zn1—O3W | 2.0653 (8) | C5—C6 | 1.5123 (15) |
| Zn1—O1 | 2.0953 (9) | C5—H5A | 0.9700 |
| Zn1—O6i | 2.1071 (9) | C5—H5B | 0.9700 |
| Zn1—O4 | 2.1259 (9) | C7—N2 | 1.3135 (18) |
| Zn1—O3 | 2.1436 (8) | C7—N1 | 1.3250 (19) |
| O1—C1 | 1.2624 (12) | C7—N3 | 1.3305 (18) |
| O2—C1 | 1.2430 (13) | N1—H1N1 | 0.8653 |
| O3—C2 | 1.4382 (12) | N1—H2N1 | 0.9161 |
| O3—H1O3 | 0.9125 | N2—H1N2 | 0.8782 |
| O4—C4 | 1.2757 (15) | N2—H2N2 | 0.8767 |
| O5—C4 | 1.2389 (14) | N3—H1N3 | 0.8616 |
| O6—C6 | 1.2669 (12) | N3—H2N3 | 0.8455 |
| O6—Zn1i | 2.1071 (9) | O1W—H1W1 | 0.7969 |
| O7—C6 | 1.2498 (13) | O1W—H2W1 | 0.8189 |
| C1—C2 | 1.5510 (14) | O2W—H1W2 | 0.8432 |
| C2—C3 | 1.5302 (14) | O2W—H2W2 | 0.7641 |
| C2—C5 | 1.5355 (14) | O3W—H1W3 | 0.8481 |
| C3—C4 | 1.5237 (16) | O3W—H2W3 | 0.7377 |
| C3—H3A | 0.9700 | ||
| O2W—Zn1—O3W | 93.79 (3) | C2—C3—H3B | 107.8 |
| O2W—Zn1—O1 | 171.26 (3) | H3A—C3—H3B | 107.2 |
| O3W—Zn1—O1 | 94.55 (3) | O5—C4—O4 | 122.94 (11) |
| O2W—Zn1—O6i | 95.68 (4) | O5—C4—C3 | 116.42 (11) |
| O3W—Zn1—O6i | 93.63 (3) | O4—C4—C3 | 120.64 (9) |
| O1—Zn1—O6i | 86.38 (4) | C6—C5—C2 | 115.82 (8) |
| O2W—Zn1—O4 | 91.59 (4) | C6—C5—H5A | 108.3 |
| O3W—Zn1—O4 | 94.00 (4) | C2—C5—H5A | 108.3 |
| O1—Zn1—O4 | 85.24 (4) | C6—C5—H5B | 108.3 |
| O6i—Zn1—O4 | 169.08 (3) | C2—C5—H5B | 108.3 |
| O2W—Zn1—O3 | 94.25 (3) | H5A—C5—H5B | 107.4 |
| O3W—Zn1—O3 | 171.92 (3) | O7—C6—O6 | 123.51 (10) |
| O1—Zn1—O3 | 77.38 (3) | O7—C6—C5 | 117.91 (9) |
| O6i—Zn1—O3 | 86.39 (3) | O6—C6—C5 | 118.54 (9) |
| O4—Zn1—O3 | 84.96 (3) | N2—C7—N1 | 120.18 (13) |
| C1—O1—Zn1 | 113.29 (7) | N2—C7—N3 | 120.45 (14) |
| C2—O3—Zn1 | 106.65 (6) | N1—C7—N3 | 119.36 (13) |
| C2—O3—H1O3 | 106.7 | C7—N1—H1N1 | 124.8 |
| Zn1—O3—H1O3 | 105.3 | C7—N1—H2N1 | 123.6 |
| C4—O4—Zn1 | 127.79 (7) | H1N1—N1—H2N1 | 111.5 |
| C6—O6—Zn1i | 125.31 (7) | C7—N2—H1N2 | 121.7 |
| O2—C1—O1 | 124.51 (10) | C7—N2—H2N2 | 117.8 |
| O2—C1—C2 | 117.97 (9) | H1N2—N2—H2N2 | 119.7 |
| O1—C1—C2 | 117.48 (9) | C7—N3—H1N3 | 111.4 |
| O3—C2—C3 | 106.41 (8) | C7—N3—H2N3 | 120.1 |
| O3—C2—C5 | 110.47 (8) | H1N3—N3—H2N3 | 124.1 |
| C3—C2—C5 | 109.15 (8) | H1W1—O1W—H2W1 | 102.7 |
| O3—C2—C1 | 110.03 (7) | Zn1—O2W—H1W2 | 121.5 |
| C3—C2—C1 | 110.05 (9) | Zn1—O2W—H2W2 | 124.3 |
| C5—C2—C1 | 110.64 (9) | H1W2—O2W—H2W2 | 108.4 |
| C4—C3—C2 | 117.86 (9) | Zn1—O3W—H1W3 | 116.0 |
| C4—C3—H3A | 107.8 | Zn1—O3W—H2W3 | 95.9 |
| C2—C3—H3A | 107.8 | H1W3—O3W—H2W3 | 110.5 |
| C4—C3—H3B | 107.8 | ||
| O3W—Zn1—O1—C1 | 150.43 (8) | O1—C1—C2—O3 | 12.55 (13) |
| O6i—Zn1—O1—C1 | −116.20 (9) | O2—C1—C2—C3 | 73.57 (12) |
| O4—Zn1—O1—C1 | 56.79 (8) | O1—C1—C2—C3 | −104.39 (11) |
| O3—Zn1—O1—C1 | −29.10 (8) | O2—C1—C2—C5 | −47.13 (12) |
| O2W—Zn1—O3—C2 | −143.52 (7) | O1—C1—C2—C5 | 134.91 (10) |
| O1—Zn1—O3—C2 | 33.95 (6) | O3—C2—C3—C4 | −56.32 (12) |
| O6i—Zn1—O3—C2 | 121.05 (6) | C5—C2—C3—C4 | −175.54 (10) |
| O4—Zn1—O3—C2 | −52.29 (6) | C1—C2—C3—C4 | 62.86 (12) |
| O2W—Zn1—O4—C4 | 91.34 (10) | Zn1—O4—C4—O5 | −150.02 (10) |
| O3W—Zn1—O4—C4 | −174.75 (10) | Zn1—O4—C4—C3 | 30.55 (16) |
| O1—Zn1—O4—C4 | −80.50 (10) | C2—C3—C4—O5 | 174.68 (11) |
| O6i—Zn1—O4—C4 | −40.5 (3) | C2—C3—C4—O4 | −5.86 (17) |
| O3—Zn1—O4—C4 | −2.78 (10) | O3—C2—C5—C6 | 45.40 (12) |
| Zn1—O1—C1—O2 | −160.08 (9) | C3—C2—C5—C6 | 162.07 (10) |
| Zn1—O1—C1—C2 | 17.74 (12) | C1—C2—C5—C6 | −76.69 (12) |
| Zn1—O3—C2—C3 | 84.83 (8) | Zn1i—O6—C6—O7 | −4.75 (18) |
| Zn1—O3—C2—C5 | −156.82 (6) | Zn1i—O6—C6—C5 | 177.29 (8) |
| Zn1—O3—C2—C1 | −34.36 (9) | C2—C5—C6—O7 | −174.40 (11) |
| O2—C1—C2—O3 | −169.49 (9) | C2—C5—C6—O6 | 3.68 (16) |
| H··· | ||||
| O3—H1O3···O6 | 0.91 | 1.87 | 2.6445 (13) | 142 |
| N1—H1N1···O1W | 0.86 | 2.38 | 3.1607 (19) | 150 |
| N1—H2N1···O4 | 0.92 | 2.10 | 2.9855 (17) | 161 |
| N2—H1N2···O5ii | 0.88 | 2.12 | 2.9351 (18) | 154 |
| N2—H2N2···O1Wiii | 0.88 | 2.05 | 2.9077 (19) | 166 |
| N3—H1N3···O4ii | 0.86 | 2.29 | 3.1011 (18) | 156 |
| N3—H1N3···O5ii | 0.86 | 2.55 | 3.3221 (18) | 150 |
| N3—H2N3···O1 | 0.85 | 2.36 | 3.1788 (18) | 162 |
| O1W—H1W1···O2iv | 0.80 | 1.97 | 2.7640 (15) | 177 |
| O1W—H2W1···O5v | 0.82 | 2.05 | 2.8568 (17) | 170 |
| O2W—H1W2···O1iv | 0.84 | 1.88 | 2.7172 (12) | 171 |
| O2W—H2W2···O7vi | 0.76 | 1.86 | 2.6116 (13) | 167 |
| O3W—H1W3···O2iv | 0.85 | 1.90 | 2.7215 (12) | 163 |
| O3W—H2W3···O7i | 0.74 | 1.92 | 2.6424 (12) | 166 |
| C5—H5B···O3Wvii | 0.97 | 2.53 | 3.4943 (13) | 172 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O3—H1 | 0.91 | 1.87 | 2.6445 (13) | 142 |
| N1—H1 | 0.86 | 2.38 | 3.1607 (19) | 150 |
| N1—H2 | 0.92 | 2.10 | 2.9855 (17) | 161 |
| N2—H1 | 0.88 | 2.12 | 2.9351 (18) | 154 |
| N2—H2 | 0.88 | 2.05 | 2.9077 (19) | 166 |
| N3—H1 | 0.86 | 2.29 | 3.1011 (18) | 156 |
| N3—H1 | 0.86 | 2.55 | 3.3221 (18) | 150 |
| N3—H2 | 0.85 | 2.36 | 3.1788 (18) | 162 |
| O1 | 0.80 | 1.97 | 2.7640 (15) | 177 |
| O1 | 0.82 | 2.05 | 2.8568 (17) | 170 |
| O2 | 0.84 | 1.88 | 2.7172 (12) | 171 |
| O2 | 0.76 | 1.86 | 2.6116 (13) | 167 |
| O3 | 0.85 | 1.90 | 2.7215 (12) | 163 |
| O3 | 0.74 | 1.92 | 2.6424 (12) | 166 |
| C5—H5 | 0.97 | 2.53 | 3.4943 (13) | 172 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) ; (vii) .