| Literature DB >> 21578581 |
Mohammad T M Al-Dajani, Hassan H Abdallah, Nornisah Mohamed, Chin Sing Yeap, Hoong-Kun Fun.
Abstract
The asymmetric unit of the title compound, (CH(6)N(3))(4)[Cu(C(6)H(5)O(7))(2)]·2H(2)O, contains one-half of a centrosymmetric Cu(II) complex anion, two guanidinium cations and a water mol-ecule. The Cu(II) ion, lying on a crystallographic inversion center, is hexa-coordinated with two citrate anions in a distorted octahedral geometry. An intra-molecular O-H⋯O hydrogen bond generates an S(6) ring motif. In the crystal structure, mol-ecules are linked into a three-dimensional framework by inter-molecular N-H⋯O and O-H⋯O hydrogen bonds.Entities:
Year: 2009 PMID: 21578581 PMCID: PMC2971813 DOI: 10.1107/S1600536809046170
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| (CH6N3)4[Cu(C6H5O7)2]·2H2O | |
| Triclinic, | |
| Hall symbol: -P 1 | Mo |
| Cell parameters from 9680 reflections | |
| θ = 2.3–34.9° | |
| µ = 0.78 mm−1 | |
| α = 96.503 (1)° | |
| β = 105.441 (1)° | Block, blue |
| γ = 112.306 (1)° | 0.60 × 0.39 × 0.32 mm |
| Bruker SMART APEXII CCD area-detector diffractometer | 7051 independent reflections |
| Radiation source: fine-focus sealed tube | 6306 reflections with |
| graphite | |
| φ and ω scans | θmax = 35.3°, θmin = 2.1° |
| Absorption correction: multi-scan ( | |
| 37237 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 7051 reflections | (Δ/σ)max < 0.001 |
| 206 parameters | Δρmax = 0.44 e Å−3 |
| 0 restraints | Δρmin = −0.49 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Cu1 | 0.5000 | 1.0000 | 0.5000 | 0.02544 (5) | |
| O1 | 0.66219 (12) | 0.89568 (10) | 0.55711 (9) | 0.04046 (18) | |
| O2 | 0.55673 (11) | 1.02356 (8) | 0.33541 (8) | 0.03511 (15) | |
| O3 | 0.32813 (9) | 0.77094 (8) | 0.36675 (7) | 0.02790 (12) | |
| H1O3 | 0.2276 | 0.7661 | 0.3035 | 0.042* | |
| O4 | 0.76260 (15) | 0.72314 (13) | 0.55564 (10) | 0.0536 (3) | |
| O5 | 0.57936 (15) | 0.90234 (12) | 0.15326 (10) | 0.0506 (2) | |
| O7 | 0.09687 (12) | 0.65390 (12) | −0.05629 (9) | 0.04401 (19) | |
| O6 | 0.10222 (13) | 0.74648 (13) | 0.15156 (9) | 0.0480 (2) | |
| C1 | 0.66253 (14) | 0.77440 (12) | 0.49850 (10) | 0.03244 (18) | |
| C2 | 0.53925 (14) | 0.68374 (11) | 0.35373 (10) | 0.03180 (18) | |
| H2A | 0.4699 | 0.5826 | 0.3601 | 0.038* | |
| H2B | 0.6052 | 0.6721 | 0.2966 | 0.038* | |
| C3 | 0.42059 (12) | 0.74833 (10) | 0.27880 (9) | 0.02586 (14) | |
| C4 | 0.52711 (13) | 0.90199 (11) | 0.25150 (10) | 0.02936 (16) | |
| C5 | 0.29501 (13) | 0.63732 (12) | 0.14090 (10) | 0.03315 (18) | |
| H5A | 0.3568 | 0.6313 | 0.0784 | 0.040* | |
| H5B | 0.2432 | 0.5367 | 0.1567 | 0.040* | |
| C6 | 0.15557 (13) | 0.68329 (13) | 0.07232 (11) | 0.03335 (18) | |
| N1 | 0.33925 (19) | 0.13097 (19) | 0.12541 (16) | 0.0627 (4) | |
| H1N1 | 0.3944 | 0.1103 | 0.0759 | 0.075* | |
| H2N1 | 0.3625 | 0.1237 | 0.2099 | 0.075* | |
| N2 | 0.13528 (17) | 0.20918 (16) | 0.14703 (11) | 0.0503 (3) | |
| H1N2 | 0.0587 | 0.2390 | 0.1118 | 0.060* | |
| H2N2 | 0.1577 | 0.2022 | 0.2316 | 0.060* | |
| N3 | 0.18333 (18) | 0.18500 (18) | −0.05808 (13) | 0.0548 (3) | |
| H1N3 | 0.1067 | 0.2149 | −0.0929 | 0.066* | |
| H2N3 | 0.2372 | 0.1622 | −0.1078 | 0.066* | |
| C7 | 0.21821 (16) | 0.17412 (15) | 0.07130 (13) | 0.0409 (2) | |
| N4 | 0.86185 (16) | 0.53693 (13) | 0.28012 (13) | 0.0475 (2) | |
| H1N4 | 0.8743 | 0.6260 | 0.3163 | 0.057* | |
| H2N4 | 0.8867 | 0.5223 | 0.2066 | 0.057* | |
| N5 | 0.78586 (17) | 0.28597 (12) | 0.28065 (14) | 0.0506 (3) | |
| H1N5 | 0.7486 | 0.2106 | 0.3171 | 0.061* | |
| H2N5 | 0.8111 | 0.2727 | 0.2071 | 0.061* | |
| N6 | 0.76591 (17) | 0.44356 (13) | 0.45058 (12) | 0.0469 (2) | |
| H1N6 | 0.7286 | 0.3687 | 0.4875 | 0.056* | |
| H2N6 | 0.7782 | 0.5324 | 0.4872 | 0.056* | |
| C8 | 0.80435 (14) | 0.42221 (12) | 0.33777 (12) | 0.03575 (19) | |
| O1W | 0.9973 (2) | 0.13741 (17) | 0.59833 (19) | 0.0955 (6) | |
| H1W1 | 0.9976 | 0.1225 | 0.5223 | 0.143* | |
| H2W1 | 0.8945 | 0.0656 | 0.5902 | 0.143* |
| Cu1 | 0.03201 (8) | 0.02210 (7) | 0.02568 (7) | 0.01325 (6) | 0.01258 (6) | 0.00553 (5) |
| O1 | 0.0452 (4) | 0.0371 (4) | 0.0360 (4) | 0.0230 (3) | 0.0056 (3) | −0.0025 (3) |
| O2 | 0.0494 (4) | 0.0258 (3) | 0.0361 (3) | 0.0148 (3) | 0.0244 (3) | 0.0102 (3) |
| O3 | 0.0326 (3) | 0.0312 (3) | 0.0270 (3) | 0.0169 (3) | 0.0150 (2) | 0.0095 (2) |
| O4 | 0.0671 (6) | 0.0638 (6) | 0.0356 (4) | 0.0484 (5) | 0.0001 (4) | 0.0013 (4) |
| O5 | 0.0680 (6) | 0.0506 (5) | 0.0475 (5) | 0.0245 (5) | 0.0415 (5) | 0.0142 (4) |
| O7 | 0.0438 (4) | 0.0615 (5) | 0.0297 (3) | 0.0260 (4) | 0.0114 (3) | 0.0117 (3) |
| O6 | 0.0495 (5) | 0.0745 (6) | 0.0368 (4) | 0.0434 (5) | 0.0156 (4) | 0.0118 (4) |
| C1 | 0.0374 (5) | 0.0347 (4) | 0.0283 (4) | 0.0200 (4) | 0.0097 (3) | 0.0055 (3) |
| C2 | 0.0381 (5) | 0.0299 (4) | 0.0298 (4) | 0.0209 (4) | 0.0075 (3) | 0.0030 (3) |
| C3 | 0.0307 (4) | 0.0259 (3) | 0.0257 (3) | 0.0156 (3) | 0.0118 (3) | 0.0055 (3) |
| C4 | 0.0349 (4) | 0.0310 (4) | 0.0297 (4) | 0.0173 (3) | 0.0166 (3) | 0.0097 (3) |
| C5 | 0.0345 (4) | 0.0344 (4) | 0.0302 (4) | 0.0184 (4) | 0.0081 (3) | 0.0007 (3) |
| C6 | 0.0317 (4) | 0.0402 (5) | 0.0306 (4) | 0.0168 (4) | 0.0118 (3) | 0.0095 (4) |
| N1 | 0.0661 (8) | 0.0851 (10) | 0.0603 (7) | 0.0545 (8) | 0.0185 (6) | 0.0314 (7) |
| N2 | 0.0583 (7) | 0.0732 (8) | 0.0362 (5) | 0.0412 (6) | 0.0187 (5) | 0.0210 (5) |
| N3 | 0.0626 (7) | 0.0884 (9) | 0.0431 (5) | 0.0535 (7) | 0.0265 (5) | 0.0286 (6) |
| C7 | 0.0425 (6) | 0.0463 (6) | 0.0403 (5) | 0.0248 (5) | 0.0127 (4) | 0.0160 (4) |
| N4 | 0.0615 (7) | 0.0363 (5) | 0.0504 (6) | 0.0167 (5) | 0.0300 (5) | 0.0196 (4) |
| N5 | 0.0674 (7) | 0.0337 (4) | 0.0606 (7) | 0.0170 (5) | 0.0423 (6) | 0.0136 (4) |
| N6 | 0.0701 (7) | 0.0422 (5) | 0.0486 (6) | 0.0307 (5) | 0.0365 (5) | 0.0214 (4) |
| C8 | 0.0382 (5) | 0.0329 (4) | 0.0413 (5) | 0.0146 (4) | 0.0197 (4) | 0.0144 (4) |
| O1W | 0.0812 (9) | 0.0655 (8) | 0.1106 (12) | −0.0041 (7) | 0.0578 (9) | −0.0212 (8) |
| Cu1—O2i | 1.9169 (7) | C5—H5B | 0.97 |
| Cu1—O2 | 1.9169 (7) | N1—C7 | 1.3292 (16) |
| Cu1—O1 | 2.0857 (8) | N1—H1N1 | 0.86 |
| Cu1—O1i | 2.0857 (8) | N1—H2N1 | 0.86 |
| Cu1—O3i | 2.2015 (7) | N2—C7 | 1.3189 (17) |
| Cu1—O3 | 2.2016 (7) | N2—H1N2 | 0.86 |
| O1—C1 | 1.2704 (12) | N2—H2N2 | 0.86 |
| O2—C4 | 1.2798 (12) | N3—C7 | 1.3162 (16) |
| O3—C3 | 1.4401 (11) | N3—H1N3 | 0.86 |
| O3—H1O3 | 0.95 | N3—H2N3 | 0.86 |
| O4—C1 | 1.2432 (13) | N4—C8 | 1.3255 (14) |
| O5—C4 | 1.2286 (12) | N4—H1N4 | 0.86 |
| O7—C6 | 1.2464 (13) | N4—H2N4 | 0.86 |
| O6—C6 | 1.2678 (13) | N5—C8 | 1.3232 (15) |
| C1—C2 | 1.5261 (14) | N5—H1N5 | 0.86 |
| C2—C3 | 1.5273 (13) | N5—H2N5 | 0.86 |
| C2—H2A | 0.97 | N6—C8 | 1.3191 (15) |
| C2—H2B | 0.97 | N6—H1N6 | 0.86 |
| C3—C5 | 1.5334 (13) | N6—H2N6 | 0.86 |
| C3—C4 | 1.5513 (13) | O1W—H1W1 | 0.78 |
| C5—C6 | 1.5234 (14) | O1W—H2W1 | 0.90 |
| C5—H5A | 0.97 | ||
| O2i—Cu1—O2 | 179.999 (1) | O5—C4—C3 | 119.72 (9) |
| O2i—Cu1—O1 | 89.36 (4) | O2—C4—C3 | 116.95 (8) |
| O2—Cu1—O1 | 90.64 (4) | C6—C5—C3 | 113.23 (8) |
| O2i—Cu1—O1i | 90.64 (4) | C6—C5—H5A | 108.9 |
| O2—Cu1—O1i | 89.36 (4) | C3—C5—H5A | 108.9 |
| O1—Cu1—O1i | 180.00 (3) | C6—C5—H5B | 108.9 |
| O2i—Cu1—O3i | 80.58 (3) | C3—C5—H5B | 108.9 |
| O2—Cu1—O3i | 99.42 (3) | H5A—C5—H5B | 107.7 |
| O1—Cu1—O3i | 97.62 (3) | O7—C6—O6 | 123.57 (10) |
| O1i—Cu1—O3i | 82.38 (3) | O7—C6—C5 | 119.46 (10) |
| O2i—Cu1—O3 | 99.42 (3) | O6—C6—C5 | 116.94 (9) |
| O2—Cu1—O3 | 80.58 (3) | C7—N1—H1N1 | 120.0 |
| O1—Cu1—O3 | 82.38 (3) | C7—N1—H2N1 | 120.0 |
| O1i—Cu1—O3 | 97.62 (3) | H1N1—N1—H2N1 | 120.0 |
| O3i—Cu1—O3 | 180.0 | C7—N2—H1N2 | 120.0 |
| C1—O1—Cu1 | 131.70 (7) | C7—N2—H2N2 | 120.0 |
| C4—O2—Cu1 | 116.90 (6) | H1N2—N2—H2N2 | 120.0 |
| C3—O3—Cu1 | 102.63 (5) | C7—N3—H1N3 | 120.0 |
| C3—O3—H1O3 | 103.2 | C7—N3—H2N3 | 120.0 |
| Cu1—O3—H1O3 | 113.8 | H1N3—N3—H2N3 | 120.0 |
| O4—C1—O1 | 122.02 (10) | N3—C7—N2 | 119.75 (11) |
| O4—C1—C2 | 116.47 (9) | N3—C7—N1 | 119.69 (13) |
| O1—C1—C2 | 121.51 (9) | N2—C7—N1 | 120.54 (12) |
| C1—C2—C3 | 117.43 (7) | C8—N4—H1N4 | 120.0 |
| C1—C2—H2A | 107.9 | C8—N4—H2N4 | 120.0 |
| C3—C2—H2A | 107.9 | H1N4—N4—H2N4 | 120.0 |
| C1—C2—H2B | 107.9 | C8—N5—H1N5 | 120.0 |
| C3—C2—H2B | 107.9 | C8—N5—H2N5 | 120.0 |
| H2A—C2—H2B | 107.2 | H1N5—N5—H2N5 | 120.0 |
| O3—C3—C2 | 107.59 (7) | C8—N6—H1N6 | 120.0 |
| O3—C3—C5 | 109.31 (8) | C8—N6—H2N6 | 120.0 |
| C2—C3—C5 | 110.83 (7) | H1N6—N6—H2N6 | 120.0 |
| O3—C3—C4 | 110.36 (7) | N6—C8—N5 | 120.42 (10) |
| C2—C3—C4 | 109.34 (8) | N6—C8—N4 | 120.42 (11) |
| C5—C3—C4 | 109.39 (8) | N5—C8—N4 | 119.15 (11) |
| O5—C4—O2 | 123.33 (10) | H1W1—O1W—H2W1 | 101.6 |
| O2i—Cu1—O1—C1 | 118.93 (11) | Cu1—O3—C3—C4 | −32.73 (8) |
| O2—Cu1—O1—C1 | −61.07 (11) | C1—C2—C3—O3 | −55.52 (11) |
| O3i—Cu1—O1—C1 | −160.66 (11) | C1—C2—C3—C5 | −174.99 (9) |
| O3—Cu1—O1—C1 | 19.33 (11) | C1—C2—C3—C4 | 64.35 (11) |
| O1—Cu1—O2—C4 | 58.64 (8) | Cu1—O2—C4—O5 | −169.11 (10) |
| O1i—Cu1—O2—C4 | −121.36 (8) | Cu1—O2—C4—C3 | 10.43 (12) |
| O3i—Cu1—O2—C4 | 156.47 (8) | O3—C3—C4—O5 | −161.50 (10) |
| O3—Cu1—O2—C4 | −23.53 (8) | C2—C3—C4—O5 | 80.34 (12) |
| O2i—Cu1—O3—C3 | −149.08 (5) | C5—C3—C4—O5 | −41.19 (13) |
| O2—Cu1—O3—C3 | 30.92 (5) | O3—C3—C4—O2 | 18.95 (12) |
| O1—Cu1—O3—C3 | −61.01 (5) | C2—C3—C4—O2 | −99.21 (10) |
| O1i—Cu1—O3—C3 | 118.99 (5) | C5—C3—C4—O2 | 139.26 (9) |
| Cu1—O1—C1—O4 | −173.35 (10) | O3—C3—C5—C6 | 52.33 (11) |
| Cu1—O1—C1—C2 | 6.55 (17) | C2—C3—C5—C6 | 170.76 (9) |
| O4—C1—C2—C3 | −177.27 (11) | C4—C3—C5—C6 | −68.62 (10) |
| O1—C1—C2—C3 | 2.83 (16) | C3—C5—C6—O7 | 147.04 (11) |
| Cu1—O3—C3—C2 | 86.49 (7) | C3—C5—C6—O6 | −34.97 (14) |
| Cu1—O3—C3—C5 | −153.08 (6) |
| H··· | ||||
| O3—H1O3···O6 | 0.95 | 1.61 | 2.5034 (13) | 154 |
| N1—H1N1···O5ii | 0.86 | 2.44 | 3.169 (2) | 143 |
| N1—H2N1···O2iii | 0.86 | 2.47 | 3.0810 (19) | 129 |
| N1—H2N1···O1iv | 0.86 | 2.50 | 3.3243 (18) | 161 |
| N2—H1N2···O7v | 0.86 | 2.06 | 2.906 (2) | 169 |
| N2—H2N2···O4iv | 0.86 | 2.07 | 2.8811 (14) | 157 |
| N3—H1N3···O6v | 0.86 | 2.02 | 2.860 (2) | 167 |
| N3—H2N3···O5ii | 0.86 | 2.12 | 2.937 (2) | 157 |
| N4—H1N4···O1Wvi | 0.86 | 2.10 | 2.916 (2) | 157 |
| N4—H2N4···O6vii | 0.86 | 2.56 | 3.0760 (18) | 119 |
| N4—H2N4···O7ii | 0.86 | 2.26 | 2.9973 (17) | 144 |
| N5—H1N5···O2iii | 0.86 | 2.06 | 2.8484 (15) | 152 |
| N5—H2N5···O7ii | 0.86 | 2.03 | 2.8273 (17) | 153 |
| N6—H1N6···O3iv | 0.86 | 2.18 | 3.0140 (14) | 164 |
| N6—H2N6···O4 | 0.86 | 1.99 | 2.8387 (18) | 170 |
| O1W—H1W1···O4vi | 0.78 | 2.52 | 3.032 (2) | 124 |
| O1W—H2W1···O1iii | 0.90 | 2.03 | 2.932 (2) | 175 |
Selected bond lengths (Å)
| Cu1—O2 | 1.9169 (7) |
| Cu1—O1 | 2.0857 (8) |
| Cu1—O3 | 2.2016 (7) |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O3—H1 | 0.95 | 1.61 | 2.5034 (13) | 154 |
| N1—H1 | 0.86 | 2.44 | 3.169 (2) | 143 |
| N1—H2 | 0.86 | 2.47 | 3.0810 (19) | 129 |
| N1—H2 | 0.86 | 2.50 | 3.3243 (18) | 161 |
| N2—H1 | 0.86 | 2.06 | 2.906 (2) | 169 |
| N2—H2 | 0.86 | 2.07 | 2.8811 (14) | 157 |
| N3—H1 | 0.86 | 2.02 | 2.860 (2) | 167 |
| N3—H2 | 0.86 | 2.12 | 2.937 (2) | 157 |
| N4—H1 | 0.86 | 2.10 | 2.916 (2) | 157 |
| N4—H2 | 0.86 | 2.56 | 3.0760 (18) | 119 |
| N4—H2 | 0.86 | 2.26 | 2.9973 (17) | 144 |
| N5—H1 | 0.86 | 2.06 | 2.8484 (15) | 152 |
| N5—H2 | 0.86 | 2.03 | 2.8273 (17) | 153 |
| N6—H1 | 0.86 | 2.18 | 3.0140 (14) | 164 |
| N6—H2 | 0.86 | 1.99 | 2.8387 (18) | 170 |
| O1 | 0.78 | 2.52 | 3.032 (2) | 124 |
| O1 | 0.90 | 2.03 | 2.932 (2) | 175 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .