Literature DB >> 21578581

Tetra-guanidinium bis-[citrato(3-)]cuprate(II) dihydrate.

Mohammad T M Al-Dajani, Hassan H Abdallah, Nornisah Mohamed, Chin Sing Yeap, Hoong-Kun Fun.   

Abstract

The asymmetric unit of the title compound, (CH(6)N(3))(4)[Cu(C(6)H(5)O(7))(2)]·2H(2)O, contains one-half of a centrosymmetric Cu(II) complex anion, two guanidinium cations and a water mol-ecule. The Cu(II) ion, lying on a crystallographic inversion center, is hexa-coordinated with two citrate anions in a distorted octahedral geometry. An intra-molecular O-H⋯O hydrogen bond generates an S(6) ring motif. In the crystal structure, mol-ecules are linked into a three-dimensional framework by inter-molecular N-H⋯O and O-H⋯O hydrogen bonds.

Entities:  

Year:  2009        PMID: 21578581      PMCID: PMC2971813          DOI: 10.1107/S1600536809046170

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to citric acid and guanidine, see: Raczyńska et al. (2003 ▶); Yamada et al. (2009 ▶); Sigman et al. (1993 ▶). For a related structure with a guanidinium cation, see: Al-Dajani et al. (2009 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For the stability of the temperature controller used for the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

(CH6N3)4[Cu(C6H5O7)2]·2H2O M = 718.12 Triclinic, a = 9.0426 (1) Å b = 9.7763 (2) Å c = 10.3366 (2) Å α = 96.503 (1)° β = 105.441 (1)° γ = 112.306 (1)° V = 791.01 (2) Å3 Z = 1 Mo Kα radiation μ = 0.78 mm−1 T = 296 K 0.60 × 0.39 × 0.32 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (; Bruker, 2005 ▶) T min = 0.653, T max = 0.787 37237 measured reflections 7051 independent reflections 6306 reflections with I > 2σ(I) R int = 0.024

Refinement

R[F 2 > 2σ(F 2)] = 0.031 wR(F 2) = 0.094 S = 1.05 7051 reflections 206 parameters H-atom parameters constrained Δρmax = 0.44 e Å−3 Δρmin = −0.49 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809046170/ci2960sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809046170/ci2960Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
(CH6N3)4[Cu(C6H5O7)2]·2H2OZ = 1
Mr = 718.12F(000) = 375
Triclinic, P1Dx = 1.508 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 9.0426 (1) ÅCell parameters from 9680 reflections
b = 9.7763 (2) Åθ = 2.3–34.9°
c = 10.3366 (2) ŵ = 0.78 mm1
α = 96.503 (1)°T = 296 K
β = 105.441 (1)°Block, blue
γ = 112.306 (1)°0.60 × 0.39 × 0.32 mm
V = 791.01 (2) Å3
Bruker SMART APEXII CCD area-detector diffractometer7051 independent reflections
Radiation source: fine-focus sealed tube6306 reflections with I > 2σ(I)
graphiteRint = 0.024
φ and ω scansθmax = 35.3°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −14→14
Tmin = 0.653, Tmax = 0.787k = −15→15
37237 measured reflectionsl = −16→16
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.031Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.094H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.0533P)2 + 0.108P] where P = (Fo2 + 2Fc2)/3
7051 reflections(Δ/σ)max < 0.001
206 parametersΔρmax = 0.44 e Å3
0 restraintsΔρmin = −0.49 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cu10.50001.00000.50000.02544 (5)
O10.66219 (12)0.89568 (10)0.55711 (9)0.04046 (18)
O20.55673 (11)1.02356 (8)0.33541 (8)0.03511 (15)
O30.32813 (9)0.77094 (8)0.36675 (7)0.02790 (12)
H1O30.22760.76610.30350.042*
O40.76260 (15)0.72314 (13)0.55564 (10)0.0536 (3)
O50.57936 (15)0.90234 (12)0.15326 (10)0.0506 (2)
O70.09687 (12)0.65390 (12)−0.05629 (9)0.04401 (19)
O60.10222 (13)0.74648 (13)0.15156 (9)0.0480 (2)
C10.66253 (14)0.77440 (12)0.49850 (10)0.03244 (18)
C20.53925 (14)0.68374 (11)0.35373 (10)0.03180 (18)
H2A0.46990.58260.36010.038*
H2B0.60520.67210.29660.038*
C30.42059 (12)0.74833 (10)0.27880 (9)0.02586 (14)
C40.52711 (13)0.90199 (11)0.25150 (10)0.02936 (16)
C50.29501 (13)0.63732 (12)0.14090 (10)0.03315 (18)
H5A0.35680.63130.07840.040*
H5B0.24320.53670.15670.040*
C60.15557 (13)0.68329 (13)0.07232 (11)0.03335 (18)
N10.33925 (19)0.13097 (19)0.12541 (16)0.0627 (4)
H1N10.39440.11030.07590.075*
H2N10.36250.12370.20990.075*
N20.13528 (17)0.20918 (16)0.14703 (11)0.0503 (3)
H1N20.05870.23900.11180.060*
H2N20.15770.20220.23160.060*
N30.18333 (18)0.18500 (18)−0.05808 (13)0.0548 (3)
H1N30.10670.2149−0.09290.066*
H2N30.23720.1622−0.10780.066*
C70.21821 (16)0.17412 (15)0.07130 (13)0.0409 (2)
N40.86185 (16)0.53693 (13)0.28012 (13)0.0475 (2)
H1N40.87430.62600.31630.057*
H2N40.88670.52230.20660.057*
N50.78586 (17)0.28597 (12)0.28065 (14)0.0506 (3)
H1N50.74860.21060.31710.061*
H2N50.81110.27270.20710.061*
N60.76591 (17)0.44356 (13)0.45058 (12)0.0469 (2)
H1N60.72860.36870.48750.056*
H2N60.77820.53240.48720.056*
C80.80435 (14)0.42221 (12)0.33777 (12)0.03575 (19)
O1W0.9973 (2)0.13741 (17)0.59833 (19)0.0955 (6)
H1W10.99760.12250.52230.143*
H2W10.89450.06560.59020.143*
U11U22U33U12U13U23
Cu10.03201 (8)0.02210 (7)0.02568 (7)0.01325 (6)0.01258 (6)0.00553 (5)
O10.0452 (4)0.0371 (4)0.0360 (4)0.0230 (3)0.0056 (3)−0.0025 (3)
O20.0494 (4)0.0258 (3)0.0361 (3)0.0148 (3)0.0244 (3)0.0102 (3)
O30.0326 (3)0.0312 (3)0.0270 (3)0.0169 (3)0.0150 (2)0.0095 (2)
O40.0671 (6)0.0638 (6)0.0356 (4)0.0484 (5)0.0001 (4)0.0013 (4)
O50.0680 (6)0.0506 (5)0.0475 (5)0.0245 (5)0.0415 (5)0.0142 (4)
O70.0438 (4)0.0615 (5)0.0297 (3)0.0260 (4)0.0114 (3)0.0117 (3)
O60.0495 (5)0.0745 (6)0.0368 (4)0.0434 (5)0.0156 (4)0.0118 (4)
C10.0374 (5)0.0347 (4)0.0283 (4)0.0200 (4)0.0097 (3)0.0055 (3)
C20.0381 (5)0.0299 (4)0.0298 (4)0.0209 (4)0.0075 (3)0.0030 (3)
C30.0307 (4)0.0259 (3)0.0257 (3)0.0156 (3)0.0118 (3)0.0055 (3)
C40.0349 (4)0.0310 (4)0.0297 (4)0.0173 (3)0.0166 (3)0.0097 (3)
C50.0345 (4)0.0344 (4)0.0302 (4)0.0184 (4)0.0081 (3)0.0007 (3)
C60.0317 (4)0.0402 (5)0.0306 (4)0.0168 (4)0.0118 (3)0.0095 (4)
N10.0661 (8)0.0851 (10)0.0603 (7)0.0545 (8)0.0185 (6)0.0314 (7)
N20.0583 (7)0.0732 (8)0.0362 (5)0.0412 (6)0.0187 (5)0.0210 (5)
N30.0626 (7)0.0884 (9)0.0431 (5)0.0535 (7)0.0265 (5)0.0286 (6)
C70.0425 (6)0.0463 (6)0.0403 (5)0.0248 (5)0.0127 (4)0.0160 (4)
N40.0615 (7)0.0363 (5)0.0504 (6)0.0167 (5)0.0300 (5)0.0196 (4)
N50.0674 (7)0.0337 (4)0.0606 (7)0.0170 (5)0.0423 (6)0.0136 (4)
N60.0701 (7)0.0422 (5)0.0486 (6)0.0307 (5)0.0365 (5)0.0214 (4)
C80.0382 (5)0.0329 (4)0.0413 (5)0.0146 (4)0.0197 (4)0.0144 (4)
O1W0.0812 (9)0.0655 (8)0.1106 (12)−0.0041 (7)0.0578 (9)−0.0212 (8)
Cu1—O2i1.9169 (7)C5—H5B0.97
Cu1—O21.9169 (7)N1—C71.3292 (16)
Cu1—O12.0857 (8)N1—H1N10.86
Cu1—O1i2.0857 (8)N1—H2N10.86
Cu1—O3i2.2015 (7)N2—C71.3189 (17)
Cu1—O32.2016 (7)N2—H1N20.86
O1—C11.2704 (12)N2—H2N20.86
O2—C41.2798 (12)N3—C71.3162 (16)
O3—C31.4401 (11)N3—H1N30.86
O3—H1O30.95N3—H2N30.86
O4—C11.2432 (13)N4—C81.3255 (14)
O5—C41.2286 (12)N4—H1N40.86
O7—C61.2464 (13)N4—H2N40.86
O6—C61.2678 (13)N5—C81.3232 (15)
C1—C21.5261 (14)N5—H1N50.86
C2—C31.5273 (13)N5—H2N50.86
C2—H2A0.97N6—C81.3191 (15)
C2—H2B0.97N6—H1N60.86
C3—C51.5334 (13)N6—H2N60.86
C3—C41.5513 (13)O1W—H1W10.78
C5—C61.5234 (14)O1W—H2W10.90
C5—H5A0.97
O2i—Cu1—O2179.999 (1)O5—C4—C3119.72 (9)
O2i—Cu1—O189.36 (4)O2—C4—C3116.95 (8)
O2—Cu1—O190.64 (4)C6—C5—C3113.23 (8)
O2i—Cu1—O1i90.64 (4)C6—C5—H5A108.9
O2—Cu1—O1i89.36 (4)C3—C5—H5A108.9
O1—Cu1—O1i180.00 (3)C6—C5—H5B108.9
O2i—Cu1—O3i80.58 (3)C3—C5—H5B108.9
O2—Cu1—O3i99.42 (3)H5A—C5—H5B107.7
O1—Cu1—O3i97.62 (3)O7—C6—O6123.57 (10)
O1i—Cu1—O3i82.38 (3)O7—C6—C5119.46 (10)
O2i—Cu1—O399.42 (3)O6—C6—C5116.94 (9)
O2—Cu1—O380.58 (3)C7—N1—H1N1120.0
O1—Cu1—O382.38 (3)C7—N1—H2N1120.0
O1i—Cu1—O397.62 (3)H1N1—N1—H2N1120.0
O3i—Cu1—O3180.0C7—N2—H1N2120.0
C1—O1—Cu1131.70 (7)C7—N2—H2N2120.0
C4—O2—Cu1116.90 (6)H1N2—N2—H2N2120.0
C3—O3—Cu1102.63 (5)C7—N3—H1N3120.0
C3—O3—H1O3103.2C7—N3—H2N3120.0
Cu1—O3—H1O3113.8H1N3—N3—H2N3120.0
O4—C1—O1122.02 (10)N3—C7—N2119.75 (11)
O4—C1—C2116.47 (9)N3—C7—N1119.69 (13)
O1—C1—C2121.51 (9)N2—C7—N1120.54 (12)
C1—C2—C3117.43 (7)C8—N4—H1N4120.0
C1—C2—H2A107.9C8—N4—H2N4120.0
C3—C2—H2A107.9H1N4—N4—H2N4120.0
C1—C2—H2B107.9C8—N5—H1N5120.0
C3—C2—H2B107.9C8—N5—H2N5120.0
H2A—C2—H2B107.2H1N5—N5—H2N5120.0
O3—C3—C2107.59 (7)C8—N6—H1N6120.0
O3—C3—C5109.31 (8)C8—N6—H2N6120.0
C2—C3—C5110.83 (7)H1N6—N6—H2N6120.0
O3—C3—C4110.36 (7)N6—C8—N5120.42 (10)
C2—C3—C4109.34 (8)N6—C8—N4120.42 (11)
C5—C3—C4109.39 (8)N5—C8—N4119.15 (11)
O5—C4—O2123.33 (10)H1W1—O1W—H2W1101.6
O2i—Cu1—O1—C1118.93 (11)Cu1—O3—C3—C4−32.73 (8)
O2—Cu1—O1—C1−61.07 (11)C1—C2—C3—O3−55.52 (11)
O3i—Cu1—O1—C1−160.66 (11)C1—C2—C3—C5−174.99 (9)
O3—Cu1—O1—C119.33 (11)C1—C2—C3—C464.35 (11)
O1—Cu1—O2—C458.64 (8)Cu1—O2—C4—O5−169.11 (10)
O1i—Cu1—O2—C4−121.36 (8)Cu1—O2—C4—C310.43 (12)
O3i—Cu1—O2—C4156.47 (8)O3—C3—C4—O5−161.50 (10)
O3—Cu1—O2—C4−23.53 (8)C2—C3—C4—O580.34 (12)
O2i—Cu1—O3—C3−149.08 (5)C5—C3—C4—O5−41.19 (13)
O2—Cu1—O3—C330.92 (5)O3—C3—C4—O218.95 (12)
O1—Cu1—O3—C3−61.01 (5)C2—C3—C4—O2−99.21 (10)
O1i—Cu1—O3—C3118.99 (5)C5—C3—C4—O2139.26 (9)
Cu1—O1—C1—O4−173.35 (10)O3—C3—C5—C652.33 (11)
Cu1—O1—C1—C26.55 (17)C2—C3—C5—C6170.76 (9)
O4—C1—C2—C3−177.27 (11)C4—C3—C5—C6−68.62 (10)
O1—C1—C2—C32.83 (16)C3—C5—C6—O7147.04 (11)
Cu1—O3—C3—C286.49 (7)C3—C5—C6—O6−34.97 (14)
Cu1—O3—C3—C5−153.08 (6)
D—H···AD—HH···AD···AD—H···A
O3—H1O3···O60.951.612.5034 (13)154
N1—H1N1···O5ii0.862.443.169 (2)143
N1—H2N1···O2iii0.862.473.0810 (19)129
N1—H2N1···O1iv0.862.503.3243 (18)161
N2—H1N2···O7v0.862.062.906 (2)169
N2—H2N2···O4iv0.862.072.8811 (14)157
N3—H1N3···O6v0.862.022.860 (2)167
N3—H2N3···O5ii0.862.122.937 (2)157
N4—H1N4···O1Wvi0.862.102.916 (2)157
N4—H2N4···O6vii0.862.563.0760 (18)119
N4—H2N4···O7ii0.862.262.9973 (17)144
N5—H1N5···O2iii0.862.062.8484 (15)152
N5—H2N5···O7ii0.862.032.8273 (17)153
N6—H1N6···O3iv0.862.183.0140 (14)164
N6—H2N6···O40.861.992.8387 (18)170
O1W—H1W1···O4vi0.782.523.032 (2)124
O1W—H2W1···O1iii0.902.032.932 (2)175
Table 1

Selected bond lengths (Å)

Cu1—O21.9169 (7)
Cu1—O12.0857 (8)
Cu1—O32.2016 (7)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O3—H1O3⋯O60.951.612.5034 (13)154
N1—H1N1⋯O5i 0.862.443.169 (2)143
N1—H2N1⋯O2ii 0.862.473.0810 (19)129
N1—H2N1⋯O1iii 0.862.503.3243 (18)161
N2—H1N2⋯O7iv 0.862.062.906 (2)169
N2—H2N2⋯O4iii 0.862.072.8811 (14)157
N3—H1N3⋯O6iv 0.862.022.860 (2)167
N3—H2N3⋯O5i 0.862.122.937 (2)157
N4—H1N4⋯O1W v 0.862.102.916 (2)157
N4—H2N4⋯O6vi 0.862.563.0760 (18)119
N4—H2N4⋯O7i 0.862.262.9973 (17)144
N5—H1N5⋯O2ii 0.862.062.8484 (15)152
N5—H2N5⋯O7i 0.862.032.8273 (17)153
N6—H1N6⋯O3iii 0.862.183.0140 (14)164
N6—H2N6⋯O40.861.992.8387 (18)170
O1W—H1W1⋯O4v 0.782.523.032 (2)124
O1W—H2W1⋯O1ii 0.902.032.932 (2)175

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .

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