Literature DB >> 21579450

Alternariol.

David Siegel, Sergey Troyanov, Johannes Noack, Franziska Emmerling, Irene Nehls.   

Abstract

IN THE TITLE COMPOUND (SYSTEMATIC NAME: 3,7,9-trihydr-oxy-1-methyl-6H-benzo[c]chromen-6-one), C(14)H(10)O(5), the methyl group is shifted out of the molecular plane due to a steric collision, thus causing a slight twist of the benzene rings. The mol-ecular structure is stabilized by an intra-molecular O-H⋯O hydrogen bond, generating an S(6) ring. In the crystal, mol-ecules are connected by inter-molecular O-H⋯O hydrogen bonds into a three-dimensional network.

Entities:  

Year:  2010        PMID: 21579450      PMCID: PMC2979420          DOI: 10.1107/S1600536810017502

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

Alternariol is a mycotoxin (toxic secondary fungal metabolite) produced by ubiquitous Alternaria moulds. For information on occurence and toxicity, see: Weidenbörner (2001 ▶); Brugger et al. (2006 ▶); Wollenhaupt et al. (2008 ▶); Fehr et al. (2009 ▶). For crystallization, alternariol was obtained by total synthesis according to Koch et al. (2005 ▶). For a comparable structure, (2-chloro-7-hydr­oxy-8-methyl-6H-benzo[c]chromen-6-one), see: Appel et al. (2006 ▶).

Experimental

Crystal data

C14H10O5 M = 258.22 Orthorhombic, a = 18.969 (3) Å b = 3.7244 (6) Å c = 15.235 (3) Å V = 1076.3 (3) Å3 Z = 4 Mo Kα radiation μ = 0.12 mm−1 T = 150 K 0.40 × 0.10 × 0.02 mm

Data collection

Stoe IPDS diffractometer 6072 measured reflections 1338 independent reflections 1053 reflections with I > 2σ(I) R int = 0.067

Refinement

R[F 2 > 2σ(F 2)] = 0.035 wR(F 2) = 0.069 S = 0.99 1338 reflections 191 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.16 e Å−3 Δρmin = −0.23 e Å−3 Data collection: X-AREA (Stoe & Cie, 2006 ▶); cell refinement: X-AREA; data reduction: X-AREA; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Brandenburg, 2010 ▶) and ORTEPIII (Burnett & Johnson, 1996 ▶); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810017502/bt5266sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810017502/bt5266Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C14H10O5F(000) = 536
Mr = 258.22Dx = 1.594 Mg m3
Orthorhombic, Pca21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2c -2acCell parameters from 1894 reflections
a = 18.969 (3) Åθ = 5–26°
b = 3.7244 (6) ŵ = 0.12 mm1
c = 15.235 (3) ÅT = 150 K
V = 1076.3 (3) Å3Needle, colourless
Z = 40.40 × 0.10 × 0.02 mm
Stoe IPDS diffractometer1053 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.067
graphiteθmax = 28.1°, θmin = 2.5°
rotation method scansh = −24→22
6072 measured reflectionsk = −4→4
1338 independent reflectionsl = −20→20
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.035Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.069H atoms treated by a mixture of independent and constrained refinement
S = 0.99w = 1/[σ2(Fo2) + (0.0314P)2] where P = (Fo2 + 2Fc2)/3
1338 reflections(Δ/σ)max < 0.001
191 parametersΔρmax = 0.16 e Å3
1 restraintΔρmin = −0.23 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.54295 (9)0.3728 (6)0.78417 (11)0.0213 (4)
O20.44464 (9)0.1215 (6)0.74006 (11)0.0272 (5)
O30.42666 (9)−0.0612 (6)0.57652 (13)0.0277 (5)
H30.4192 (17)−0.038 (10)0.632 (2)0.033*
O40.61983 (10)0.1209 (7)0.38531 (11)0.0275 (5)
H40.5946 (18)0.002 (10)0.344 (2)0.033*
O50.74389 (10)0.8553 (6)0.91670 (10)0.0260 (5)
H50.78430.93070.90380.031*
C10.50516 (13)0.2203 (8)0.71956 (16)0.0193 (6)
C20.53589 (13)0.1856 (8)0.63425 (15)0.0167 (6)
C30.49365 (13)0.0493 (8)0.56447 (16)0.0192 (6)
C40.52045 (14)0.0246 (8)0.48049 (17)0.0194 (6)
H4A0.4917 (15)−0.072 (8)0.4295 (19)0.023*
C50.58935 (13)0.1357 (9)0.46651 (15)0.0183 (6)
C60.63205 (15)0.2688 (8)0.53304 (15)0.0178 (6)
H6A0.6788 (15)0.341 (8)0.5183 (18)0.021*
C70.60688 (12)0.2911 (7)0.61830 (15)0.0135 (5)
C80.64850 (13)0.4228 (7)0.69286 (14)0.0141 (5)
C90.61339 (12)0.4710 (8)0.77287 (16)0.0166 (6)
C100.64335 (14)0.6136 (8)0.84775 (16)0.0194 (6)
H100.6189 (14)0.644 (8)0.9006 (18)0.023*
C110.71326 (13)0.7093 (8)0.84418 (16)0.0186 (6)
C120.75199 (13)0.6479 (8)0.76803 (16)0.0159 (5)
H120.7968 (16)0.696 (8)0.7685 (17)0.019*
C130.72187 (13)0.5072 (7)0.69300 (15)0.0146 (5)
C140.77182 (13)0.4380 (8)0.61791 (16)0.0198 (6)
H14A0.82050.46830.63820.030*
H14B0.76220.60830.57040.030*
H14C0.76520.19230.59640.030*
U11U22U33U12U13U23
O10.0154 (8)0.0343 (13)0.0141 (8)−0.0028 (8)0.0031 (6)−0.0013 (9)
O20.0164 (9)0.0475 (14)0.0177 (8)−0.0068 (9)0.0028 (7)0.0060 (9)
O30.0125 (9)0.0439 (14)0.0268 (10)−0.0096 (9)0.0011 (8)−0.0021 (11)
O40.0164 (9)0.0518 (15)0.0143 (9)−0.0034 (10)−0.0002 (7)−0.0092 (9)
O50.0244 (10)0.0405 (13)0.0131 (8)−0.0053 (9)−0.0034 (7)−0.0063 (9)
C10.0152 (13)0.0243 (18)0.0183 (13)−0.0006 (11)−0.0013 (9)0.0027 (11)
C20.0139 (12)0.0187 (16)0.0176 (12)0.0002 (10)0.0010 (9)0.0038 (11)
C30.0113 (12)0.0239 (17)0.0222 (13)−0.0027 (11)−0.0021 (10)0.0012 (12)
C40.0166 (13)0.0218 (17)0.0200 (12)0.0027 (11)−0.0052 (10)−0.0022 (11)
C50.0149 (13)0.0277 (17)0.0123 (11)0.0025 (12)0.0021 (9)−0.0019 (12)
C60.0134 (12)0.0226 (17)0.0175 (12)0.0001 (10)0.0012 (9)−0.0003 (11)
C70.0124 (11)0.0153 (15)0.0127 (11)0.0024 (9)0.0007 (9)0.0026 (11)
C80.0170 (12)0.0150 (14)0.0102 (10)0.0036 (10)−0.0006 (9)−0.0001 (10)
C90.0129 (11)0.0216 (17)0.0153 (10)0.0008 (10)−0.0006 (10)0.0035 (11)
C100.0207 (14)0.0257 (17)0.0117 (11)0.0037 (11)0.0030 (9)0.0001 (11)
C110.0205 (13)0.0227 (17)0.0125 (11)0.0014 (11)−0.0061 (10)−0.0013 (11)
C120.0124 (11)0.0191 (15)0.0163 (11)0.0014 (10)−0.0020 (9)0.0014 (11)
C130.0166 (12)0.0139 (15)0.0133 (10)0.0023 (10)0.0015 (9)0.0030 (10)
C140.0130 (12)0.0279 (17)0.0184 (11)−0.0009 (10)0.0004 (9)−0.0038 (12)
O1—C11.343 (3)C6—C71.386 (3)
O1—C91.396 (3)C6—H6A0.95 (3)
O2—C11.245 (3)C7—C81.468 (3)
O3—C31.348 (3)C8—C91.401 (3)
O3—H30.86 (3)C8—C131.427 (4)
O4—C51.367 (3)C9—C101.381 (4)
O4—H40.91 (4)C10—C111.374 (4)
O5—C111.362 (3)C10—H100.94 (3)
O5—H50.8400C11—C121.392 (4)
C1—C21.430 (3)C12—C131.381 (4)
C2—C71.424 (3)C12—H120.87 (3)
C2—C31.425 (4)C13—C141.508 (3)
C3—C41.380 (3)C14—H14A0.9800
C4—C51.387 (4)C14—H14B0.9800
C4—H4A1.01 (3)C14—H14C0.9800
C5—C61.389 (4)
C1—O1—C9122.07 (19)C9—C8—C13115.7 (2)
C3—O3—H3105 (2)C9—C8—C7117.4 (2)
C5—O4—H4115 (2)C13—C8—C7126.8 (2)
C11—O5—H5109.5C10—C9—O1113.1 (2)
O2—C1—O1115.6 (2)C10—C9—C8124.9 (2)
O2—C1—C2125.2 (2)O1—C9—C8121.9 (2)
O1—C1—C2119.1 (2)C11—C10—C9117.7 (2)
C7—C2—C3120.2 (2)C11—C10—H10118.7 (17)
C7—C2—C1121.0 (2)C9—C10—H10123.6 (17)
C3—C2—C1118.8 (2)O5—C11—C10118.9 (2)
O3—C3—C4116.9 (2)O5—C11—C12121.1 (2)
O3—C3—C2122.5 (2)C10—C11—C12120.0 (2)
C4—C3—C2120.6 (2)C13—C12—C11122.2 (2)
C3—C4—C5118.0 (2)C13—C12—H12119.3 (18)
C3—C4—H4A122.4 (16)C11—C12—H12118.4 (18)
C5—C4—H4A119.6 (16)C12—C13—C8119.2 (2)
O4—C5—C4121.7 (2)C12—C13—C14115.6 (2)
O4—C5—C6115.4 (2)C8—C13—C14125.1 (2)
C4—C5—C6122.9 (2)C13—C14—H14A109.5
C7—C6—C5120.3 (2)C13—C14—H14B109.5
C7—C6—H6A121.6 (17)H14A—C14—H14B109.5
C5—C6—H6A118.1 (17)C13—C14—H14C109.5
C6—C7—C2118.0 (2)H14A—C14—H14C109.5
C6—C7—C8124.1 (2)H14B—C14—H14C109.5
C2—C7—C8118.0 (2)
C9—O1—C1—O2174.9 (2)C6—C7—C8—C9172.4 (3)
C9—O1—C1—C2−5.6 (4)C2—C7—C8—C9−6.5 (4)
O2—C1—C2—C7−176.9 (3)C6—C7—C8—C13−7.9 (4)
O1—C1—C2—C73.6 (4)C2—C7—C8—C13173.3 (3)
O2—C1—C2—C34.3 (4)C1—O1—C9—C10−178.2 (3)
O1—C1—C2—C3−175.2 (3)C1—O1—C9—C81.3 (4)
C7—C2—C3—O3178.6 (3)C13—C8—C9—C104.5 (4)
C1—C2—C3—O3−2.6 (4)C7—C8—C9—C10−175.7 (3)
C7—C2—C3—C4−1.3 (4)C13—C8—C9—O1−174.9 (2)
C1—C2—C3—C4177.5 (3)C7—C8—C9—O14.8 (4)
O3—C3—C4—C5−179.8 (3)O1—C9—C10—C11178.2 (3)
C2—C3—C4—C50.1 (4)C8—C9—C10—C11−1.3 (4)
C3—C4—C5—O4−179.9 (3)C9—C10—C11—O5179.1 (2)
C3—C4—C5—C60.1 (5)C9—C10—C11—C12−2.6 (4)
O4—C5—C6—C7−179.1 (3)O5—C11—C12—C13−178.6 (3)
C4—C5—C6—C70.9 (5)C10—C11—C12—C133.1 (4)
C5—C6—C7—C2−2.1 (4)C11—C12—C13—C80.3 (4)
C5—C6—C7—C8179.1 (3)C11—C12—C13—C14−176.7 (3)
C3—C2—C7—C62.3 (4)C9—C8—C13—C12−3.9 (4)
C1—C2—C7—C6−176.5 (3)C7—C8—C13—C12176.4 (3)
C3—C2—C7—C8−178.8 (3)C9—C8—C13—C14172.9 (3)
C1—C2—C7—C82.5 (4)C7—C8—C13—C14−6.8 (4)
D—H···AD—HH···AD···AD—H···A
O3—H3···O20.86 (3)1.82 (3)2.605 (3)152 (3)
O4—H4···O2i0.91 (3)1.81 (3)2.685 (3)162 (3)
O5—H5···O4ii0.841.972.809 (2)175
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O3—H3⋯O20.86 (3)1.82 (3)2.605 (3)152 (3)
O4—H4⋯O2i0.91 (3)1.81 (3)2.685 (3)162 (3)
O5—H5⋯O4ii0.841.972.809 (2)175

Symmetry codes: (i) ; (ii) .

  6 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Domino reactions of 1,3-bis-silyl enol ethers with benzopyrylium triflates: efficient synthesis of fluorescent 6H-benzo[c]chromen-6-ones, dibenzo[c,d]chromen-6-ones, and 2,3-dihydro-1H-4,6-dioxachrysen-5-ones.

Authors:  Bettina Appel; Nehad N R Saleh; Peter Langer
Journal:  Chemistry       Date:  2006-01-23       Impact factor: 5.236

3.  Total synthesis of alternariol.

Authors:  Karen Koch; Joachim Podlech; Erika Pfeiffer; Manfred Metzler
Journal:  J Org Chem       Date:  2005-04-15       Impact factor: 4.354

4.  Influence of alternariol (AOH) on regulator proteins of cap-dependent translation in porcine endometrial cells.

Authors:  K Wollenhaupt; F Schneider; U Tiemann
Journal:  Toxicol Lett       Date:  2008-08-23       Impact factor: 4.372

5.  Mutagenicity of the mycotoxin alternariol in cultured mammalian cells.

Authors:  Eva-Maria Brugger; Jörg Wagner; David M Schumacher; Karen Koch; Joachim Podlech; Manfred Metzler; Leane Lehmann
Journal:  Toxicol Lett       Date:  2006-02-07       Impact factor: 4.372

6.  Alternariol acts as a topoisomerase poison, preferentially affecting the IIalpha isoform.

Authors:  Markus Fehr; Gudrun Pahlke; Jessica Fritz; Morten O Christensen; Fritz Boege; Martina Altemöller; Joachim Podlech; Doris Marko
Journal:  Mol Nutr Food Res       Date:  2009-04       Impact factor: 5.914

  6 in total
  5 in total

1.  Conformational analysis of alternariol on the quantum level.

Authors:  Olga Scharkoi; Konstantin Fackeldey; Igor Merkulow; Karsten Andrae; Marcus Weber; Irene Nehls; David Siegel
Journal:  J Mol Model       Date:  2013-03-06       Impact factor: 1.810

2.  Computational study of pH-dependent oligomerization and ligand binding in Alt a 1, a highly allergenic protein with a unique fold.

Authors:  María Garrido-Arandia; Jorge Bretones; Cristina Gómez-Casado; Nuria Cubells; Araceli Díaz-Perales; Luis F Pacios
Journal:  J Comput Aided Mol Des       Date:  2016-04-18       Impact factor: 3.686

3.  Alternariol 9-O-methyl ether.

Authors:  Sreekanth Dasari; Mohan Bhadbhade; Brett A Neilan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-04-21

4.  Crystal Structure Determination and Hirshfeld Analysis of a New Alternariol Packing Polymorph.

Authors:  Kelly L Rue; Guodong Niu; Jun Li; Raphael G Raptis
Journal:  Crystals (Basel)       Date:  2022-04-21       Impact factor: 2.670

5.  3-Acetyl-2-fluoro-6H-benzo[c]chromen-6-one.

Authors:  Yoshinobu Ishikawa; Takafumi Suzuki; Nanako Yoshida
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-03-26
  5 in total

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