Literature DB >> 21579447

N,N'-Diphenyl-suberamide.

B Thimme Gowda, Miroslav Tokarčík, Vinola Z Rodrigues, Jozef Kožíšek, Hartmut Fuess.   

Abstract

IN THE TITLE COMPOUND (SYSTEMATIC NAME: N,N'-diphenyl-octanediamide), C(20)H(24)N(2)O(2), the two phenyl rings make an inter-planar angle of 76.5 (2)°. The crystal structure is stabilized by inter-molecular N-H⋯O hydrogen bonds, which link the mol-ecules into chains running along the b axis. The crystal studied was non-merohedrally twinned, the fractional contribution of the minor twin component being 0.203 (2).

Entities:  

Year:  2010        PMID: 21579447      PMCID: PMC2979493          DOI: 10.1107/S1600536810017344

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Gowda et al. (2007 ▶, 2009 ▶).

Experimental

Crystal data

C20H24N2O2 M = 324.41 Monoclinic, a = 18.2267 (9) Å b = 5.03097 (15) Å c = 38.1436 (15) Å β = 96.517 (4)° V = 3475.1 (2) Å3 Z = 8 Mo Kα radiation μ = 0.08 mm−1 T = 295 K 0.58 × 0.33 × 0.05 mm

Data collection

Oxford Diffraction Gemini R CCD diffractometer Absorption correction: analytical (CrysAlis PRO; Oxford Diffraction, 2009 ▶) T min = 0.957, T max = 0.996 27788 measured reflections 3027 independent reflections 2524 reflections with I > 2σ(I) R int = 0.064

Refinement

R[F 2 > 2σ(F 2)] = 0.076 wR(F 2) = 0.203 S = 1.09 3027 reflections 224 parameters 2 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.21 e Å−3 Δρmin = −0.22 e Å−3 Data collection: CrysAlis PRO (Oxford Diffraction, 2009 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 2002 ▶); software used to prepare material for publication: SHELXL97, PLATON (Spek, 2009 ▶) and WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810017344/bt5267sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810017344/bt5267Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H24N2O2F(000) = 1392
Mr = 324.41Dx = 1.24 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 7864 reflections
a = 18.2267 (9) Åθ = 1.9–27.4°
b = 5.03097 (15) ŵ = 0.08 mm1
c = 38.1436 (15) ÅT = 295 K
β = 96.517 (4)°Plate, colourless
V = 3475.1 (2) Å30.58 × 0.33 × 0.05 mm
Z = 8
Oxford Diffraction Gemini R CCD diffractometer3027 independent reflections
graphite2524 reflections with I > 2σ(I)
Detector resolution: 10.434 pixels mm-1Rint = 0.064
ω scansθmax = 25.0°, θmin = 2.2°
Absorption correction: analytical (CrysAlis PRO; Oxford Diffraction, 2009)h = −21→21
Tmin = 0.957, Tmax = 0.996k = −5→5
27788 measured reflectionsl = −45→45
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.076Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.203H atoms treated by a mixture of independent and constrained refinement
S = 1.09w = 1/[σ2(Fo2) + (0.0865P)2 + 8.373P] where P = (Fo2 + 2Fc2)/3
3027 reflections(Δ/σ)max < 0.001
224 parametersΔρmax = 0.21 e Å3
2 restraintsΔρmin = −0.22 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.0479 (2)0.3940 (7)0.55627 (10)0.0357 (9)
C20.0772 (2)0.2805 (8)0.52403 (10)0.0392 (9)
H2A0.03580.23780.50670.047*
H2B0.10290.11580.53060.047*
C30.1291 (2)0.4621 (8)0.50714 (10)0.0398 (9)
H3A0.17320.4890.52350.048*
H3B0.10550.63370.50280.048*
C40.1511 (2)0.3560 (8)0.47276 (10)0.0398 (9)
H4A0.10680.32570.45670.048*
H4B0.17540.18570.47720.048*
C50.2020 (2)0.5373 (8)0.45507 (9)0.0415 (10)
H5A0.2470.56270.47090.05*
H5B0.17840.70950.45140.05*
C60.2222 (2)0.4363 (8)0.42003 (10)0.0417 (10)
H6A0.24570.26380.42350.05*
H6B0.17750.41330.4040.05*
C70.2735 (2)0.6215 (8)0.40346 (10)0.0416 (10)
H7A0.31860.64180.41940.05*
H7B0.25050.7950.40040.05*
C80.2930 (2)0.5254 (7)0.36811 (10)0.0388 (9)
C9−0.0140 (2)0.2611 (7)0.60821 (9)0.0343 (8)
C10−0.0691 (2)0.0877 (9)0.61530 (10)0.0459 (10)
H10−0.0822−0.05220.59990.055*
C11−0.1051 (3)0.1199 (10)0.64514 (11)0.0565 (12)
H11−0.14250.00340.64970.068*
C12−0.0851 (3)0.3247 (10)0.66783 (11)0.0595 (13)
H12−0.1090.34820.68790.071*
C13−0.0299 (3)0.4945 (9)0.66109 (10)0.0574 (12)
H13−0.01680.6330.67670.069*
C140.0070 (2)0.4649 (8)0.63144 (10)0.0439 (10)
H140.04510.57980.62730.053*
C150.3338 (2)0.6863 (7)0.31213 (10)0.0382 (9)
C160.3837 (2)0.4959 (9)0.30577 (11)0.0517 (11)
H160.4010.37720.32350.062*
C170.4088 (3)0.4791 (11)0.27288 (13)0.0676 (14)
H170.44250.34790.26850.081*
C180.3837 (3)0.6570 (11)0.24667 (12)0.0695 (15)
H180.40110.64760.22470.083*
C190.3336 (3)0.8462 (11)0.25299 (13)0.0738 (16)
H190.31570.96330.23520.089*
C200.3091 (3)0.8644 (9)0.28602 (12)0.0565 (12)
H200.27590.99710.29050.068*
N10.02190 (19)0.2112 (6)0.57763 (8)0.0381 (8)
H1N0.029 (2)0.055 (6)0.5713 (11)0.046*
N20.3100 (2)0.7191 (6)0.34624 (9)0.0405 (8)
H2N0.302 (2)0.868 (6)0.3547 (11)0.049*
O10.04456 (18)0.6348 (5)0.56139 (8)0.0503 (8)
O20.2948 (2)0.2890 (6)0.36057 (9)0.0652 (10)
U11U22U33U12U13U23
C10.041 (2)0.029 (2)0.038 (2)0.0025 (17)0.0096 (17)−0.0019 (17)
C20.050 (2)0.032 (2)0.038 (2)−0.0012 (18)0.0144 (18)−0.0054 (17)
C30.046 (2)0.037 (2)0.038 (2)−0.0056 (18)0.0141 (17)−0.0075 (17)
C40.044 (2)0.038 (2)0.039 (2)−0.0018 (18)0.0125 (17)−0.0048 (17)
C50.052 (2)0.038 (2)0.037 (2)−0.0057 (19)0.0163 (18)−0.0080 (18)
C60.055 (2)0.031 (2)0.042 (2)−0.0081 (18)0.0166 (19)−0.0062 (17)
C70.051 (2)0.033 (2)0.042 (2)−0.0046 (19)0.0131 (19)−0.0038 (18)
C80.050 (2)0.026 (2)0.044 (2)−0.0011 (18)0.0215 (19)−0.0072 (17)
C90.039 (2)0.0295 (19)0.0347 (19)0.0036 (17)0.0069 (16)0.0021 (15)
C100.057 (3)0.043 (2)0.039 (2)−0.007 (2)0.0131 (19)−0.0037 (18)
C110.060 (3)0.058 (3)0.056 (3)0.002 (2)0.029 (2)0.011 (2)
C120.079 (3)0.062 (3)0.042 (2)0.013 (3)0.030 (2)0.005 (2)
C130.089 (3)0.047 (3)0.037 (2)0.005 (3)0.011 (2)−0.009 (2)
C140.051 (2)0.040 (2)0.041 (2)−0.0034 (19)0.0109 (19)−0.0051 (19)
C150.046 (2)0.030 (2)0.041 (2)−0.0092 (17)0.0134 (18)−0.0034 (17)
C160.060 (3)0.049 (2)0.050 (2)0.008 (2)0.021 (2)0.002 (2)
C170.081 (3)0.060 (3)0.070 (3)0.005 (3)0.042 (3)−0.009 (3)
C180.102 (4)0.066 (3)0.046 (3)−0.018 (3)0.035 (3)−0.009 (3)
C190.113 (5)0.063 (3)0.047 (3)−0.005 (3)0.019 (3)0.013 (3)
C200.072 (3)0.042 (3)0.058 (3)0.002 (2)0.017 (2)0.004 (2)
N10.0527 (19)0.0262 (16)0.0384 (17)−0.0009 (15)0.0174 (15)−0.0018 (14)
N20.054 (2)0.0263 (17)0.0446 (19)−0.0037 (15)0.0198 (16)−0.0016 (15)
O10.072 (2)0.0293 (15)0.0548 (18)0.0002 (14)0.0316 (16)−0.0006 (13)
O20.110 (3)0.0280 (16)0.067 (2)−0.0056 (17)0.051 (2)−0.0043 (14)
C1—O11.229 (5)C9—N11.423 (5)
C1—N11.350 (5)C10—C111.386 (6)
C1—C21.508 (5)C10—H100.93
C2—C31.510 (5)C11—C121.368 (7)
C2—H2A0.97C11—H110.93
C2—H2B0.97C12—C131.366 (7)
C3—C41.512 (5)C12—H120.93
C3—H3A0.97C13—C141.388 (6)
C3—H3B0.97C13—H130.93
C4—C51.513 (5)C14—H140.93
C4—H4A0.97C15—C161.362 (6)
C4—H4B0.97C15—C201.377 (6)
C5—C61.514 (5)C15—N21.427 (5)
C5—H5A0.97C16—C171.385 (6)
C5—H5B0.97C16—H160.93
C6—C71.509 (5)C17—C181.381 (7)
C6—H6A0.97C17—H170.93
C6—H6B0.97C18—C191.360 (8)
C7—C81.512 (5)C18—H180.93
C7—H7A0.97C19—C201.387 (7)
C7—H7B0.97C19—H190.93
C8—O21.225 (5)C20—H200.93
C8—N21.342 (5)N1—H1N0.84 (3)
C9—C101.380 (6)N2—H2N0.84 (3)
C9—C141.381 (5)
O1—C1—N1123.3 (3)C10—C9—C14119.9 (3)
O1—C1—C2122.1 (3)C10—C9—N1117.5 (3)
N1—C1—C2114.5 (3)C14—C9—N1122.5 (3)
C1—C2—C3114.6 (3)C9—C10—C11120.7 (4)
C1—C2—H2A108.6C9—C10—H10119.7
C3—C2—H2A108.6C11—C10—H10119.7
C1—C2—H2B108.6C12—C11—C10119.3 (4)
C3—C2—H2B108.6C12—C11—H11120.3
H2A—C2—H2B107.6C10—C11—H11120.3
C2—C3—C4113.4 (3)C13—C12—C11120.1 (4)
C2—C3—H3A108.9C13—C12—H12119.9
C4—C3—H3A108.9C11—C12—H12119.9
C2—C3—H3B108.9C12—C13—C14121.4 (4)
C4—C3—H3B108.9C12—C13—H13119.3
H3A—C3—H3B107.7C14—C13—H13119.3
C3—C4—C5114.2 (3)C9—C14—C13118.5 (4)
C3—C4—H4A108.7C9—C14—H14120.7
C5—C4—H4A108.7C13—C14—H14120.7
C3—C4—H4B108.7C16—C15—C20120.0 (4)
C5—C4—H4B108.7C16—C15—N2121.5 (4)
H4A—C4—H4B107.6C20—C15—N2118.4 (4)
C4—C5—C6114.5 (3)C15—C16—C17120.0 (4)
C4—C5—H5A108.6C15—C16—H16120
C6—C5—H5A108.6C17—C16—H16120
C4—C5—H5B108.6C18—C17—C16120.0 (5)
C6—C5—H5B108.6C18—C17—H17120
H5A—C5—H5B107.6C16—C17—H17120
C7—C6—C5112.8 (3)C19—C18—C17119.9 (4)
C7—C6—H6A109C19—C18—H18120
C5—C6—H6A109C17—C18—H18120
C7—C6—H6B109C18—C19—C20120.0 (5)
C5—C6—H6B109C18—C19—H19120
H6A—C6—H6B107.8C20—C19—H19120
C6—C7—C8113.3 (3)C15—C20—C19120.1 (5)
C6—C7—H7A108.9C15—C20—H20119.9
C8—C7—H7A108.9C19—C20—H20119.9
C6—C7—H7B108.9C1—N1—C9126.9 (3)
C8—C7—H7B108.9C1—N1—H1N113 (3)
H7A—C7—H7B107.7C9—N1—H1N120 (3)
O2—C8—N2123.0 (4)C8—N2—C15126.8 (3)
O2—C8—C7122.3 (4)C8—N2—H2N110 (3)
N2—C8—C7114.6 (3)C15—N2—H2N123 (3)
O1—C1—C2—C323.9 (6)C20—C15—C16—C17−0.9 (7)
N1—C1—C2—C3−159.8 (3)N2—C15—C16—C17−176.4 (4)
C1—C2—C3—C4−173.8 (3)C15—C16—C17—C180.7 (8)
C2—C3—C4—C5179.0 (4)C16—C17—C18—C19−1.0 (8)
C3—C4—C5—C6−178.1 (4)C17—C18—C19—C201.7 (8)
C4—C5—C6—C7−179.4 (4)C16—C15—C20—C191.5 (7)
C5—C6—C7—C8−178.9 (4)N2—C15—C20—C19177.1 (4)
C6—C7—C8—O2−29.1 (6)C18—C19—C20—C15−1.9 (8)
C6—C7—C8—N2152.7 (4)O1—C1—N1—C91.5 (7)
C14—C9—C10—C111.7 (6)C2—C1—N1—C9−174.8 (4)
N1—C9—C10—C11178.2 (4)C10—C9—N1—C1145.5 (4)
C9—C10—C11—C12−0.6 (7)C14—C9—N1—C1−38.0 (6)
C10—C11—C12—C13−0.2 (7)O2—C8—N2—C15−1.4 (7)
C11—C12—C13—C140.0 (7)C7—C8—N2—C15176.8 (4)
C10—C9—C14—C13−2.0 (6)C16—C15—N2—C8−42.2 (6)
N1—C9—C14—C13−178.3 (4)C20—C15—N2—C8142.3 (4)
C12—C13—C14—C91.1 (7)
D—H···AD—HH···AD···AD—H···A
N1—H1N···O1i0.84 (3)2.17 (3)3.004 (4)173 (4)
N2—H2N···O2ii0.84 (3)2.13 (3)2.937 (4)161 (4)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1N⋯O1i0.84 (3)2.17 (3)3.004 (4)173 (4)
N2—H2N⋯O2ii0.84 (3)2.13 (3)2.937 (4)161 (4)

Symmetry codes: (i) ; (ii) .

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1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  N-Benzo-ylbenzene-sulfonamide.

Authors:  B Thimme Gowda; Sabine Foro; P A Suchetan; Hartmut Fuess
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-09-26

3.  Methyl N-phenyl-succinamate.

Authors:  B Thimme Gowda; Sabine Foro; B S Saraswathi; Hartmut Fuess
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-11-11

4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
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  7 in total

1.  1,8-Bis(3-chloro-anilino)-N,N'-bis-(3-chloro-phen-yl)octane-1,8-diimine.

Authors:  B Thimme Gowda; Sabine Foro; Vinola Z Rodrigues; H S Spandana; Hartmut Fuess
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-02-12

2.  N,N'-Bis[(2-methyl-phenyl)sulfon-yl]adipamide.

Authors:  Vinola Z Rodrigues; Sabine Foro; B Thimme Gowda
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-03-05

3.  N,N'-Bis(3-methyl-phen-yl)propane-diamide.

Authors:  B Thimme Gowda; Miroslav Tokarčík; Vinola Z Rodrigues; Jozef Kožíšek; Hartmut Fuess
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-10-31

4.  N,N'-Bis(2-chloro-phen-yl)propane-diamide.

Authors:  B Thimme Gowda; Miroslav Tokarčík; Vinola Z Rodrigues; Jozef Kožíšek; Hartmut Fuess
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-10-31

5.  N,N'-Diphenyl-but-2-enediamide.

Authors:  B Thimme Gowda; Sabine Foro; K Shakuntala; Hartmut Fuess
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-12-11

6.  N,N'-Bis(2-methyl-phen-yl)succinamide.

Authors:  B S Saraswathi; Sabine Foro; B Thimme Gowda
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-02-12

7.  Crystal structure and Hirshfeld surface analysis of N,N'-bis-(2-nitro-phen-yl)glutaramide.

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