Literature DB >> 21579205

1-(4-Chloro-phen-yl)-3-(2-thienylcarbon-yl)thio-urea.

Sohail Saeed, Naghmana Rashid, Wing-Tak Wong.   

Abstract

The title compound, C(12)H(9)ClN(2)OS(2), exists in the thio-amide form with an intra-molecular N-H⋯O hydrogen bond across the thio-urea and the carbonyl group. The dihedral angle between the rings is 10.36 (11)°. In the crystal structure, mol-ecules are linked into chains by weak inter-molecular C-H⋯Cl hydrogen-bonding inter-actions.

Entities:  

Year:  2010        PMID: 21579205      PMCID: PMC2979166          DOI: 10.1107/S1600536810013863

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to the biological activity of thio­urea derivatives, see: Xu et al. (2004 ▶); Gu et al. (2007 ▶). For related structures, see: Saeed et al. (2008 ▶, 2009 ▶). For the cytotoxicity of anti­cancer drugs to normal cells in cancer therapy, see: Saeed et al. (2010 ▶).

Experimental

Crystal data

C12H9ClN2OS2 M = 296.78 Monoclinic, a = 4.6552 (7) Å b = 11.660 (2) Å c = 23.630 (4) Å β = 95.626 (2)° V = 1276.4 (4) Å3 Z = 4 Mo Kα radiation μ = 0.61 mm−1 T = 300 K 0.42 × 0.19 × 0.08 mm

Data collection

Bruker SMART 1000 CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.783, T max = 0.953 8549 measured reflections 3102 independent reflections 2578 reflections with I > 2σ(I) R int = 0.019

Refinement

R[F 2 > 2σ(F 2)] = 0.038 wR(F 2) = 0.107 S = 1.07 3102 reflections 172 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.31 e Å−3 Δρmin = −0.20 e Å−3 Data collection: SMART (Bruker, 1998 ▶); cell refinement: SAINT (Bruker, 2006 ▶); data reduction: SAINT and CrystalStructure (Rigaku/MSC and Rigaku, 2006 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEPII (Johnson, 1976 ▶) and DIAMOND (Brandenburg, 1998 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810013863/lx2142sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810013863/lx2142Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H9ClN2OS2F(000) = 608
Mr = 296.78Dx = 1.544 Mg m3
Monoclinic, P21/nMelting point: 412 K
Hall symbol: -P 2ynMo Kα radiation, λ = 0.71073 Å
a = 4.6552 (7) ÅCell parameters from 8801 reflections
b = 11.660 (2) Åθ = 1.7–28.3°
c = 23.630 (4) ŵ = 0.61 mm1
β = 95.626 (2)°T = 300 K
V = 1276.4 (4) Å3Prism, yellow
Z = 40.42 × 0.19 × 0.08 mm
Bruker SMART 1000 CCD diffractometer3102 independent reflections
Radiation source: fine-focus sealed tube2578 reflections with I > 2σ(I)
graphiteRint = 0.019
ω scanθmax = 28.3°, θmin = 1.7°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −6→6
Tmin = 0.783, Tmax = 0.953k = −9→15
8549 measured reflectionsl = −30→31
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.038Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.107H atoms treated by a mixture of independent and constrained refinement
S = 1.07w = 1/[σ2(Fo2) + (0.0546P)2 + 0.3548P] where P = (Fo2 + 2Fc2)/3
3102 reflections(Δ/σ)max < 0.001
172 parametersΔρmax = 0.31 e Å3
0 restraintsΔρmin = −0.20 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl11.37357 (11)0.14501 (5)0.54454 (2)0.06174 (17)
S10.42417 (13)0.54355 (4)0.38816 (3)0.06558 (19)
S2−0.38487 (12)0.23708 (4)0.20193 (2)0.05870 (17)
O10.0745 (3)0.22204 (11)0.29637 (6)0.0549 (3)
N10.4375 (3)0.31315 (13)0.37757 (6)0.0426 (3)
H1N0.357 (5)0.2572 (18)0.3578 (9)0.053 (6)*
N20.0880 (3)0.41119 (13)0.32158 (7)0.0446 (3)
H2N0.001 (5)0.475 (2)0.3134 (10)0.063 (7)*
C11.1034 (4)0.19841 (16)0.49542 (8)0.0448 (4)
C20.9940 (4)0.12913 (16)0.45099 (8)0.0470 (4)
H21.06550.05540.44700.056*
C30.7761 (4)0.17123 (15)0.41242 (7)0.0446 (4)
H30.70100.12540.38230.053*
C40.6685 (4)0.28161 (15)0.41829 (7)0.0395 (3)
C50.7819 (4)0.34955 (16)0.46329 (8)0.0486 (4)
H50.71110.42330.46770.058*
C61.0007 (4)0.30746 (17)0.50170 (8)0.0506 (4)
H61.07770.35310.53170.061*
C70.3216 (4)0.41540 (14)0.36378 (7)0.0409 (4)
C8−0.0182 (4)0.32019 (15)0.28912 (7)0.0408 (4)
C9−0.2510 (4)0.34711 (15)0.24497 (7)0.0413 (4)
C10−0.3865 (4)0.44880 (17)0.22982 (8)0.0499 (4)
H10−0.34390.51830.24810.060*
C11−0.5988 (5)0.43535 (18)0.18316 (9)0.0574 (5)
H11−0.71090.49520.16710.069*
C12−0.6202 (5)0.32616 (19)0.16464 (9)0.0586 (5)
H12−0.75030.30220.13460.070*
U11U22U33U12U13U23
Cl10.0533 (3)0.0688 (3)0.0585 (3)−0.0017 (2)−0.0177 (2)0.0113 (2)
S10.0745 (4)0.0364 (2)0.0783 (4)−0.0039 (2)−0.0311 (3)−0.0049 (2)
S20.0706 (3)0.0434 (3)0.0563 (3)0.0030 (2)−0.0228 (2)−0.0074 (2)
O10.0672 (9)0.0381 (6)0.0547 (8)0.0023 (6)−0.0187 (6)−0.0028 (6)
N10.0463 (8)0.0358 (7)0.0429 (8)−0.0042 (6)−0.0088 (6)−0.0016 (6)
N20.0469 (8)0.0372 (7)0.0466 (8)0.0002 (6)−0.0105 (6)−0.0020 (6)
C10.0384 (8)0.0518 (10)0.0427 (9)−0.0060 (7)−0.0035 (7)0.0076 (7)
C20.0494 (10)0.0429 (9)0.0473 (9)0.0012 (8)−0.0023 (7)0.0025 (7)
C30.0491 (9)0.0403 (9)0.0423 (9)−0.0046 (7)−0.0060 (7)−0.0026 (7)
C40.0387 (8)0.0392 (8)0.0394 (8)−0.0047 (6)−0.0026 (6)0.0029 (7)
C50.0552 (10)0.0416 (9)0.0465 (9)−0.0005 (8)−0.0075 (8)−0.0035 (7)
C60.0526 (10)0.0501 (10)0.0460 (9)−0.0084 (8)−0.0113 (8)−0.0045 (8)
C70.0418 (8)0.0395 (8)0.0401 (8)−0.0048 (7)−0.0030 (6)−0.0010 (7)
C80.0428 (8)0.0395 (8)0.0388 (8)−0.0031 (7)−0.0020 (6)0.0002 (7)
C90.0436 (8)0.0394 (9)0.0392 (8)−0.0041 (7)−0.0042 (6)0.0001 (7)
C100.0528 (10)0.0419 (10)0.0519 (10)0.0004 (8)−0.0098 (8)0.0005 (8)
C110.0578 (11)0.0509 (11)0.0595 (12)0.0041 (9)−0.0146 (9)0.0077 (9)
C120.0620 (12)0.0570 (12)0.0514 (10)−0.0013 (9)−0.0214 (9)0.0007 (9)
Cl1—C11.7408 (18)C2—H20.9300
S1—C71.6548 (17)C3—C41.393 (2)
S2—C121.693 (2)C3—H30.9300
S2—C91.7158 (17)C4—C51.388 (2)
O1—C81.229 (2)C5—C61.386 (3)
N1—C71.336 (2)C5—H50.9300
N1—C41.419 (2)C6—H60.9300
N1—H1N0.87 (2)C8—C91.463 (2)
N2—C81.373 (2)C9—C101.374 (2)
N2—C71.402 (2)C10—C111.415 (3)
N2—H2N0.86 (2)C10—H100.9300
C1—C61.372 (3)C11—C121.347 (3)
C1—C21.382 (3)C11—H110.9300
C2—C31.385 (2)C12—H120.9300
C12—S2—C991.64 (10)C1—C6—C5119.94 (17)
C7—N1—C4131.12 (15)C1—C6—H6120.0
C7—N1—H1N113.5 (14)C5—C6—H6120.0
C4—N1—H1N115.4 (14)N1—C7—N2114.12 (15)
C8—N2—C7129.51 (16)N1—C7—S1128.69 (13)
C8—N2—H2N113.9 (16)N2—C7—S1117.15 (13)
C7—N2—H2N116.5 (16)O1—C8—N2122.64 (16)
C6—C1—C2121.18 (16)O1—C8—C9121.65 (16)
C6—C1—Cl1119.75 (14)N2—C8—C9115.71 (15)
C2—C1—Cl1119.06 (15)C10—C9—C8131.32 (16)
C1—C2—C3118.96 (17)C10—C9—S2111.10 (13)
C1—C2—H2120.5C8—C9—S2117.57 (13)
C3—C2—H2120.5C9—C10—C11112.03 (17)
C2—C3—C4120.61 (16)C9—C10—H10124.0
C2—C3—H3119.7C11—C10—H10124.0
C4—C3—H3119.7C12—C11—C10112.44 (18)
C5—C4—C3119.35 (16)C12—C11—H11123.8
C5—C4—N1125.26 (16)C10—C11—H11123.8
C3—C4—N1115.33 (15)C11—C12—S2112.79 (15)
C6—C5—C4119.96 (18)C11—C12—H12123.6
C6—C5—H5120.0S2—C12—H12123.6
C4—C5—H5120.0
D—H···AD—HH···AD···AD—H···A
N1—H1N···O10.87 (2)1.91 (2)2.651 (2)143 (2)
C12—H12···Cl1i0.932.693.523 (2)149
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1N⋯O10.87 (2)1.91 (2)2.651 (2)143 (2)
C12—H12⋯Cl1i0.932.693.523 (2)149

Symmetry code: (i) .

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