| Literature DB >> 21579205 |
Sohail Saeed, Naghmana Rashid, Wing-Tak Wong.
Abstract
The title compound, C(12)H(9)ClN(2)OS(2), exists in the thio-amide form with an intra-molecular N-H⋯O hydrogen bond across the thio-urea and the carbonyl group. The dihedral angle between the rings is 10.36 (11)°. In the crystal structure, mol-ecules are linked into chains by weak inter-molecular C-H⋯Cl hydrogen-bonding inter-actions.Entities:
Year: 2010 PMID: 21579205 PMCID: PMC2979166 DOI: 10.1107/S1600536810013863
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C12H9ClN2OS2 | |
| Monoclinic, | Melting point: 412 K |
| Hall symbol: -P 2yn | Mo |
| Cell parameters from 8801 reflections | |
| θ = 1.7–28.3° | |
| µ = 0.61 mm−1 | |
| β = 95.626 (2)° | |
| Prism, yellow | |
| 0.42 × 0.19 × 0.08 mm |
| Bruker SMART 1000 CCD diffractometer | 3102 independent reflections |
| Radiation source: fine-focus sealed tube | 2578 reflections with |
| graphite | |
| ω scan | θmax = 28.3°, θmin = 1.7° |
| Absorption correction: multi-scan ( | |
| 8549 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 3102 reflections | (Δ/σ)max < 0.001 |
| 172 parameters | Δρmax = 0.31 e Å−3 |
| 0 restraints | Δρmin = −0.20 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| Cl1 | 1.37357 (11) | 0.14501 (5) | 0.54454 (2) | 0.06174 (17) | |
| S1 | 0.42417 (13) | 0.54355 (4) | 0.38816 (3) | 0.06558 (19) | |
| S2 | −0.38487 (12) | 0.23708 (4) | 0.20193 (2) | 0.05870 (17) | |
| O1 | 0.0745 (3) | 0.22204 (11) | 0.29637 (6) | 0.0549 (3) | |
| N1 | 0.4375 (3) | 0.31315 (13) | 0.37757 (6) | 0.0426 (3) | |
| H1N | 0.357 (5) | 0.2572 (18) | 0.3578 (9) | 0.053 (6)* | |
| N2 | 0.0880 (3) | 0.41119 (13) | 0.32158 (7) | 0.0446 (3) | |
| H2N | 0.001 (5) | 0.475 (2) | 0.3134 (10) | 0.063 (7)* | |
| C1 | 1.1034 (4) | 0.19841 (16) | 0.49542 (8) | 0.0448 (4) | |
| C2 | 0.9940 (4) | 0.12913 (16) | 0.45099 (8) | 0.0470 (4) | |
| H2 | 1.0655 | 0.0554 | 0.4470 | 0.056* | |
| C3 | 0.7761 (4) | 0.17123 (15) | 0.41242 (7) | 0.0446 (4) | |
| H3 | 0.7010 | 0.1254 | 0.3823 | 0.053* | |
| C4 | 0.6685 (4) | 0.28161 (15) | 0.41829 (7) | 0.0395 (3) | |
| C5 | 0.7819 (4) | 0.34955 (16) | 0.46329 (8) | 0.0486 (4) | |
| H5 | 0.7111 | 0.4233 | 0.4677 | 0.058* | |
| C6 | 1.0007 (4) | 0.30746 (17) | 0.50170 (8) | 0.0506 (4) | |
| H6 | 1.0777 | 0.3531 | 0.5317 | 0.061* | |
| C7 | 0.3216 (4) | 0.41540 (14) | 0.36378 (7) | 0.0409 (4) | |
| C8 | −0.0182 (4) | 0.32019 (15) | 0.28912 (7) | 0.0408 (4) | |
| C9 | −0.2510 (4) | 0.34711 (15) | 0.24497 (7) | 0.0413 (4) | |
| C10 | −0.3865 (4) | 0.44880 (17) | 0.22982 (8) | 0.0499 (4) | |
| H10 | −0.3439 | 0.5183 | 0.2481 | 0.060* | |
| C11 | −0.5988 (5) | 0.43535 (18) | 0.18316 (9) | 0.0574 (5) | |
| H11 | −0.7109 | 0.4952 | 0.1671 | 0.069* | |
| C12 | −0.6202 (5) | 0.32616 (19) | 0.16464 (9) | 0.0586 (5) | |
| H12 | −0.7503 | 0.3022 | 0.1346 | 0.070* |
| Cl1 | 0.0533 (3) | 0.0688 (3) | 0.0585 (3) | −0.0017 (2) | −0.0177 (2) | 0.0113 (2) |
| S1 | 0.0745 (4) | 0.0364 (2) | 0.0783 (4) | −0.0039 (2) | −0.0311 (3) | −0.0049 (2) |
| S2 | 0.0706 (3) | 0.0434 (3) | 0.0563 (3) | 0.0030 (2) | −0.0228 (2) | −0.0074 (2) |
| O1 | 0.0672 (9) | 0.0381 (6) | 0.0547 (8) | 0.0023 (6) | −0.0187 (6) | −0.0028 (6) |
| N1 | 0.0463 (8) | 0.0358 (7) | 0.0429 (8) | −0.0042 (6) | −0.0088 (6) | −0.0016 (6) |
| N2 | 0.0469 (8) | 0.0372 (7) | 0.0466 (8) | 0.0002 (6) | −0.0105 (6) | −0.0020 (6) |
| C1 | 0.0384 (8) | 0.0518 (10) | 0.0427 (9) | −0.0060 (7) | −0.0035 (7) | 0.0076 (7) |
| C2 | 0.0494 (10) | 0.0429 (9) | 0.0473 (9) | 0.0012 (8) | −0.0023 (7) | 0.0025 (7) |
| C3 | 0.0491 (9) | 0.0403 (9) | 0.0423 (9) | −0.0046 (7) | −0.0060 (7) | −0.0026 (7) |
| C4 | 0.0387 (8) | 0.0392 (8) | 0.0394 (8) | −0.0047 (6) | −0.0026 (6) | 0.0029 (7) |
| C5 | 0.0552 (10) | 0.0416 (9) | 0.0465 (9) | −0.0005 (8) | −0.0075 (8) | −0.0035 (7) |
| C6 | 0.0526 (10) | 0.0501 (10) | 0.0460 (9) | −0.0084 (8) | −0.0113 (8) | −0.0045 (8) |
| C7 | 0.0418 (8) | 0.0395 (8) | 0.0401 (8) | −0.0048 (7) | −0.0030 (6) | −0.0010 (7) |
| C8 | 0.0428 (8) | 0.0395 (8) | 0.0388 (8) | −0.0031 (7) | −0.0020 (6) | 0.0002 (7) |
| C9 | 0.0436 (8) | 0.0394 (9) | 0.0392 (8) | −0.0041 (7) | −0.0042 (6) | 0.0001 (7) |
| C10 | 0.0528 (10) | 0.0419 (10) | 0.0519 (10) | 0.0004 (8) | −0.0098 (8) | 0.0005 (8) |
| C11 | 0.0578 (11) | 0.0509 (11) | 0.0595 (12) | 0.0041 (9) | −0.0146 (9) | 0.0077 (9) |
| C12 | 0.0620 (12) | 0.0570 (12) | 0.0514 (10) | −0.0013 (9) | −0.0214 (9) | 0.0007 (9) |
| Cl1—C1 | 1.7408 (18) | C2—H2 | 0.9300 |
| S1—C7 | 1.6548 (17) | C3—C4 | 1.393 (2) |
| S2—C12 | 1.693 (2) | C3—H3 | 0.9300 |
| S2—C9 | 1.7158 (17) | C4—C5 | 1.388 (2) |
| O1—C8 | 1.229 (2) | C5—C6 | 1.386 (3) |
| N1—C7 | 1.336 (2) | C5—H5 | 0.9300 |
| N1—C4 | 1.419 (2) | C6—H6 | 0.9300 |
| N1—H1N | 0.87 (2) | C8—C9 | 1.463 (2) |
| N2—C8 | 1.373 (2) | C9—C10 | 1.374 (2) |
| N2—C7 | 1.402 (2) | C10—C11 | 1.415 (3) |
| N2—H2N | 0.86 (2) | C10—H10 | 0.9300 |
| C1—C6 | 1.372 (3) | C11—C12 | 1.347 (3) |
| C1—C2 | 1.382 (3) | C11—H11 | 0.9300 |
| C2—C3 | 1.385 (2) | C12—H12 | 0.9300 |
| C12—S2—C9 | 91.64 (10) | C1—C6—C5 | 119.94 (17) |
| C7—N1—C4 | 131.12 (15) | C1—C6—H6 | 120.0 |
| C7—N1—H1N | 113.5 (14) | C5—C6—H6 | 120.0 |
| C4—N1—H1N | 115.4 (14) | N1—C7—N2 | 114.12 (15) |
| C8—N2—C7 | 129.51 (16) | N1—C7—S1 | 128.69 (13) |
| C8—N2—H2N | 113.9 (16) | N2—C7—S1 | 117.15 (13) |
| C7—N2—H2N | 116.5 (16) | O1—C8—N2 | 122.64 (16) |
| C6—C1—C2 | 121.18 (16) | O1—C8—C9 | 121.65 (16) |
| C6—C1—Cl1 | 119.75 (14) | N2—C8—C9 | 115.71 (15) |
| C2—C1—Cl1 | 119.06 (15) | C10—C9—C8 | 131.32 (16) |
| C1—C2—C3 | 118.96 (17) | C10—C9—S2 | 111.10 (13) |
| C1—C2—H2 | 120.5 | C8—C9—S2 | 117.57 (13) |
| C3—C2—H2 | 120.5 | C9—C10—C11 | 112.03 (17) |
| C2—C3—C4 | 120.61 (16) | C9—C10—H10 | 124.0 |
| C2—C3—H3 | 119.7 | C11—C10—H10 | 124.0 |
| C4—C3—H3 | 119.7 | C12—C11—C10 | 112.44 (18) |
| C5—C4—C3 | 119.35 (16) | C12—C11—H11 | 123.8 |
| C5—C4—N1 | 125.26 (16) | C10—C11—H11 | 123.8 |
| C3—C4—N1 | 115.33 (15) | C11—C12—S2 | 112.79 (15) |
| C6—C5—C4 | 119.96 (18) | C11—C12—H12 | 123.6 |
| C6—C5—H5 | 120.0 | S2—C12—H12 | 123.6 |
| C4—C5—H5 | 120.0 |
| H··· | ||||
| N1—H1N···O1 | 0.87 (2) | 1.91 (2) | 2.651 (2) | 143 (2) |
| C12—H12···Cl1i | 0.93 | 2.69 | 3.523 (2) | 149 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1 | 0.87 (2) | 1.91 (2) | 2.651 (2) | 143 (2) |
| C12—H12⋯Cl1i | 0.93 | 2.69 | 3.523 (2) | 149 |
Symmetry code: (i) .