Literature DB >> 21579105

6,7-Bis(methyl-sulfan-yl)-2,3-[(3,6,9-trioxaundecane-1,11-di-yl)bis-(sulfanediylmethyl-ene)]-1,4,5,8-tetra-thia-fulvalene.

Rui-Bin Hou, Bao Li, Bing-Zhu Yin, Li-Xin Wu.   

Abstract

In the title compound, C(18)H(26)O(3)S(8), the two five-membered rings exhibit envelope conformations. The two S atoms in the 17-membered macrocycle deviate from the plane of the fused five-membered ring by 1.429 (3) and -1.434 (3) Å in opposite directions.

Entities:  

Year:  2010        PMID: 21579105      PMCID: PMC2979097          DOI: 10.1107/S160053681001192X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to dithia­crown ether annulated tetra­thia­fulvalenes, see: Otsubo & Ogura (1985 ▶); Moore et al. (2000 ▶). For details of the synthesis, see: Chen et al. (2005 ▶). For a related structure, see Hou et al. (2009 ▶).

Experimental

Crystal data

C18H26O3S8 M = 546.87 Triclinic, a = 9.715 (5) Å b = 11.585 (7) Å c = 12.548 (5) Å α = 98.37 (2)° β = 112.112 (18)° γ = 103.94 (2)° V = 1225.3 (11) Å3 Z = 2 Mo Kα radiation μ = 0.75 mm−1 T = 290 K 0.13 × 0.11 × 0.11 mm

Data collection

Rigaku R-AXIS RAPID diffractometer Absorption correction: multi-scan (ABSCOR; Higashi, 1995 ▶) T min = 0.909, T max = 0.922 12067 measured reflections 5535 independent reflections 4519 reflections with I > 2σ(I) R int = 0.021

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.125 S = 1.09 5535 reflections 264 parameters H-atom parameters constrained Δρmax = 1.19 e Å−3 Δρmin = −0.84 e Å−3 Data collection: RAPID-AUTO (Rigaku, 1998 ▶); cell refinement: RAPID-AUTO; data reduction: CrystalStructure (Rigaku/MSC and Rigaku, 2002 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S160053681001192X/cv2706sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053681001192X/cv2706Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C18H26O3S8Z = 2
Mr = 546.87F(000) = 572
Triclinic, P1Dx = 1.482 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 9.715 (5) ÅCell parameters from 8201 reflections
b = 11.585 (7) Åθ = 3.1–27.5°
c = 12.548 (5) ŵ = 0.75 mm1
α = 98.37 (2)°T = 290 K
β = 112.112 (18)°Block, yellow
γ = 103.94 (2)°0.13 × 0.11 × 0.11 mm
V = 1225.3 (11) Å3
Rigaku R-AXIS RAPID diffractometer5535 independent reflections
Radiation source: fine-focus sealed tube4519 reflections with I > 2σ(I)
graphiteRint = 0.021
ω scansθmax = 27.5°, θmin = 3.2°
Absorption correction: multi-scan (ABSCOR; Higashi, 1995)h = −12→11
Tmin = 0.909, Tmax = 0.922k = −14→15
12067 measured reflectionsl = −15→16
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.045Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.125H-atom parameters constrained
S = 1.09w = 1/[σ2(Fo2) + (0.0606P)2 + 0.6546P] where P = (Fo2 + 2Fc2)/3
5535 reflections(Δ/σ)max = 0.004
264 parametersΔρmax = 1.19 e Å3
0 restraintsΔρmin = −0.84 e Å3
Experimental. (See detailed section in the paper)
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.8329 (4)0.2619 (3)−0.0795 (3)0.0673 (8)
H1A0.91000.3281−0.01220.101*
H1B0.87970.2016−0.09630.101*
H1C0.74720.2243−0.06200.101*
C20.6741 (3)0.4211 (2)−0.1600 (2)0.0461 (6)
C30.6468 (3)0.6002 (2)−0.0284 (2)0.0378 (5)
C40.6879 (3)0.7034 (2)0.0568 (2)0.0375 (5)
C50.8608 (3)0.9048 (2)0.2248 (2)0.0377 (5)
C61.0049 (3)0.9939 (2)0.3263 (2)0.0453 (6)
H6A1.02220.96410.39700.054*
H6B0.98751.07240.34170.054*
C71.1338 (4)1.0744 (4)0.1696 (3)0.0672 (9)
H7A1.19461.05220.12870.081*
H7B1.02381.03240.11670.081*
C81.1631 (4)1.2111 (4)0.1912 (4)0.0809 (11)
H8A1.26681.25510.25480.097*
H8B1.15771.23620.11970.097*
C91.0704 (4)1.3669 (3)0.2552 (3)0.0717 (9)
H9A1.07451.40250.19060.086*
H9B1.16881.40800.32530.086*
C100.9373 (4)1.3834 (3)0.2801 (3)0.0631 (8)
H10A0.94451.46960.29480.076*
H10B0.83831.33650.21240.076*
C110.8268 (4)1.3533 (3)0.4170 (3)0.0631 (8)
H11A0.72451.31750.34970.076*
H11B0.84271.43960.44780.076*
C120.8366 (4)1.2872 (3)0.5112 (3)0.0684 (9)
H12A0.94381.31570.57240.082*
H12B0.77011.30600.54790.082*
C130.6293 (4)1.0953 (3)0.4346 (3)0.0646 (8)
H13A0.57001.15240.42050.077*
H13B0.62151.06420.50060.077*
C140.5624 (4)0.9902 (3)0.3249 (3)0.0579 (7)
H14A0.46590.93490.31910.070*
H14B0.63580.94450.33350.070*
C150.7020 (3)1.0495 (2)0.1709 (2)0.0424 (5)
H15A0.69481.07920.10110.051*
H15B0.78951.10950.23980.051*
C160.7328 (3)0.9291 (2)0.1574 (2)0.0369 (5)
C170.5549 (3)0.4512 (3)−0.2335 (2)0.0542 (7)
C180.2899 (5)0.2958 (4)−0.4241 (4)0.0993 (14)
H18A0.30420.2321−0.38390.149*
H18B0.23540.2598−0.50860.149*
H18C0.22960.3380−0.39830.149*
O11.0472 (3)1.2390 (2)0.2231 (2)0.0649 (6)
O20.9459 (2)1.3412 (2)0.38150 (17)0.0585 (5)
O30.7891 (2)1.1573 (2)0.46389 (19)0.0605 (5)
S10.76152 (11)0.32107 (7)−0.20652 (7)0.0659 (2)
S20.75246 (8)0.49614 (6)−0.00808 (5)0.04786 (17)
S30.85994 (8)0.75086 (6)0.19036 (5)0.04658 (17)
S41.18116 (8)1.01831 (8)0.30089 (7)0.0583 (2)
S50.52206 (8)1.03736 (6)0.18849 (6)0.04905 (17)
S60.57706 (7)0.80320 (6)0.04603 (6)0.04656 (17)
S70.48777 (8)0.55840 (7)−0.16902 (6)0.05239 (18)
S80.47241 (13)0.40014 (12)−0.39012 (7)0.0970 (4)
U11U22U33U12U13U23
C10.070 (2)0.0609 (19)0.077 (2)0.0254 (16)0.0397 (18)0.0044 (16)
C20.0520 (15)0.0406 (13)0.0391 (12)−0.0002 (11)0.0261 (11)−0.0012 (10)
C30.0382 (12)0.0360 (12)0.0364 (11)0.0085 (9)0.0153 (9)0.0096 (9)
C40.0378 (12)0.0352 (11)0.0389 (11)0.0118 (9)0.0159 (9)0.0096 (9)
C50.0369 (12)0.0373 (12)0.0380 (11)0.0115 (9)0.0178 (10)0.0038 (9)
C60.0406 (13)0.0497 (14)0.0390 (12)0.0129 (11)0.0150 (10)0.0013 (10)
C70.0522 (17)0.100 (3)0.0579 (17)0.0260 (17)0.0347 (15)0.0127 (17)
C80.059 (2)0.110 (3)0.091 (3)0.019 (2)0.0487 (19)0.045 (2)
C90.078 (2)0.0544 (18)0.069 (2)−0.0044 (16)0.0316 (17)0.0209 (15)
C100.081 (2)0.0383 (14)0.0566 (16)0.0106 (14)0.0199 (15)0.0147 (12)
C110.0613 (19)0.0534 (17)0.0645 (18)0.0204 (15)0.0203 (15)0.0021 (14)
C120.064 (2)0.081 (2)0.0460 (15)0.0117 (17)0.0222 (14)−0.0003 (14)
C130.0501 (16)0.091 (2)0.0611 (18)0.0179 (16)0.0329 (14)0.0263 (17)
C140.0535 (17)0.0573 (17)0.078 (2)0.0194 (14)0.0388 (15)0.0305 (15)
C150.0411 (13)0.0337 (12)0.0526 (14)0.0112 (10)0.0212 (11)0.0106 (10)
C160.0335 (11)0.0338 (11)0.0437 (12)0.0084 (9)0.0193 (10)0.0076 (9)
C170.0500 (15)0.0618 (17)0.0353 (12)−0.0017 (13)0.0199 (12)−0.0028 (11)
C180.090 (3)0.098 (3)0.070 (2)0.000 (2)0.016 (2)0.008 (2)
O10.0606 (13)0.0569 (12)0.0870 (15)0.0080 (10)0.0468 (12)0.0237 (11)
O20.0605 (12)0.0613 (12)0.0532 (11)0.0206 (10)0.0208 (10)0.0212 (9)
O30.0486 (11)0.0760 (14)0.0617 (12)0.0191 (10)0.0265 (10)0.0257 (11)
S10.0891 (6)0.0546 (4)0.0623 (4)0.0167 (4)0.0508 (4)−0.0005 (3)
S20.0601 (4)0.0414 (3)0.0366 (3)0.0208 (3)0.0156 (3)0.0012 (2)
S30.0475 (4)0.0435 (3)0.0412 (3)0.0221 (3)0.0095 (3)0.0030 (2)
S40.0325 (3)0.0715 (5)0.0582 (4)0.0171 (3)0.0114 (3)0.0018 (3)
S50.0395 (3)0.0518 (4)0.0557 (4)0.0219 (3)0.0173 (3)0.0103 (3)
S60.0351 (3)0.0367 (3)0.0556 (4)0.0113 (2)0.0094 (3)0.0050 (3)
S70.0433 (4)0.0610 (4)0.0404 (3)0.0105 (3)0.0102 (3)0.0091 (3)
S80.0877 (7)0.1331 (10)0.0378 (4)−0.0061 (6)0.0267 (4)−0.0001 (5)
C1—S11.790 (4)C10—O21.408 (3)
C1—H1A0.9600C10—H10A0.9700
C1—H1B0.9600C10—H10B0.9700
C1—H1C0.9600C11—O21.415 (4)
C2—C171.341 (4)C11—C121.485 (5)
C2—S11.748 (3)C11—H11A0.9700
C2—S21.753 (3)C11—H11B0.9700
C3—C41.345 (3)C12—O31.425 (4)
C3—S21.750 (3)C12—H12A0.9700
C3—S71.753 (2)C12—H12B0.9700
C4—S61.746 (2)C13—O31.420 (4)
C4—S31.756 (2)C13—C141.503 (5)
C5—C161.337 (3)C13—H13A0.9700
C5—C61.492 (3)C13—H13B0.9700
C5—S31.770 (3)C14—S51.803 (3)
C6—S41.821 (3)C14—H14A0.9700
C6—H6A0.9700C14—H14B0.9700
C6—H6B0.9700C15—C161.496 (3)
C7—C81.504 (5)C15—S51.818 (3)
C7—S41.798 (4)C15—H15A0.9700
C7—H7A0.9700C15—H15B0.9700
C7—H7B0.9700C16—S61.767 (3)
C8—O11.419 (4)C17—S81.761 (3)
C8—H8A0.9700C17—S71.765 (3)
C8—H8B0.9700C18—S81.742 (5)
C9—O11.416 (4)C18—H18A0.9600
C9—C101.487 (5)C18—H18B0.9600
C9—H9A0.9700C18—H18C0.9600
C9—H9B0.9700
S1—C1—H1A109.5O2—C11—H11B110.3
S1—C1—H1B109.5C12—C11—H11B110.3
H1A—C1—H1B109.5H11A—C11—H11B108.6
S1—C1—H1C109.5O3—C12—C11111.5 (2)
H1A—C1—H1C109.5O3—C12—H12A109.3
H1B—C1—H1C109.5C11—C12—H12A109.3
C17—C2—S1124.5 (2)O3—C12—H12B109.3
C17—C2—S2116.3 (2)C11—C12—H12B109.3
S1—C2—S2119.01 (17)H12A—C12—H12B108.0
C4—C3—S2121.99 (19)O3—C13—C14109.6 (2)
C4—C3—S7124.10 (19)O3—C13—H13A109.7
S2—C3—S7113.89 (13)C14—C13—H13A109.7
C3—C4—S6123.71 (19)O3—C13—H13B109.7
C3—C4—S3122.82 (19)C14—C13—H13B109.7
S6—C4—S3113.46 (13)H13A—C13—H13B108.2
C16—C5—C6126.9 (2)C13—C14—S5114.0 (2)
C16—C5—S3116.77 (18)C13—C14—H14A108.8
C6—C5—S3116.37 (18)S5—C14—H14A108.8
C5—C6—S4114.01 (17)C13—C14—H14B108.8
C5—C6—H6A108.7S5—C14—H14B108.8
S4—C6—H6A108.7H14A—C14—H14B107.7
C5—C6—H6B108.7C16—C15—S5112.39 (16)
S4—C6—H6B108.7C16—C15—H15A109.1
H6A—C6—H6B107.6S5—C15—H15A109.1
C8—C7—S4115.4 (2)C16—C15—H15B109.1
C8—C7—H7A108.4S5—C15—H15B109.1
S4—C7—H7A108.4H15A—C15—H15B107.9
C8—C7—H7B108.4C5—C16—C15127.2 (2)
S4—C7—H7B108.4C5—C16—S6116.68 (18)
H7A—C7—H7B107.5C15—C16—S6115.94 (18)
O1—C8—C7108.5 (3)C2—C17—S8124.0 (2)
O1—C8—H8A110.0C2—C17—S7117.57 (19)
C7—C8—H8A110.0S8—C17—S7118.18 (19)
O1—C8—H8B110.0S8—C18—H18A109.5
C7—C8—H8B110.0S8—C18—H18B109.5
H8A—C8—H8B108.4H18A—C18—H18B109.5
O1—C9—C10108.2 (2)S8—C18—H18C109.5
O1—C9—H9A110.1H18A—C18—H18C109.5
C10—C9—H9A110.1H18B—C18—H18C109.5
O1—C9—H9B110.1C9—O1—C8113.5 (3)
C10—C9—H9B110.1C10—O2—C11114.0 (2)
H9A—C9—H9B108.4C13—O3—C12113.9 (3)
O2—C10—C9107.8 (3)C2—S1—C1101.77 (14)
O2—C10—H10A110.2C3—S2—C295.28 (13)
C9—C10—H10A110.2C4—S3—C594.67 (11)
O2—C10—H10B110.2C7—S4—C6103.95 (13)
C9—C10—H10B110.2C14—S5—C15102.32 (13)
H10A—C10—H10B108.5C4—S6—C1694.86 (12)
O2—C11—C12107.1 (3)C3—S7—C1794.12 (13)
O2—C11—H11A110.3C18—S8—C17102.48 (18)
C12—C11—H11A110.3
  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  New crown annelated tetrathiafulvalenes: synthesis, electrochemistry, self-assembly of thiol derivatives, and metal cation recognition

Authors: 
Journal:  J Org Chem       Date:  2000-12-01       Impact factor: 4.354

3.  13-[4,5-Bis(methyl-sulfan-yl)-1,3-dithiol-2-yl-idene]-6-oxa-3,9,12,14-tetra-thia-bicyclo-[9.3.0]tetra-dec-1(11)-ene.

Authors:  Rui-Bin Hou; Bao Li; Tie Che; Bing-Zhu Yin; Li-Xin Wu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-09-26

4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  4 in total
  1 in total

1.  2,3-Bis(methyl-sulfan-yl)-1,4,5,8-tetra-thia-fulvalene.

Authors:  Ning-Juan Zheng; Bing-Zhu Yin
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-11-27
  1 in total

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