Literature DB >> 21577982

13-[4,5-Bis(methyl-sulfan-yl)-1,3-dithiol-2-yl-idene]-6-oxa-3,9,12,14-tetra-thia-bicyclo-[9.3.0]tetra-dec-1(11)-ene.

Rui-Bin Hou, Bao Li, Tie Che, Bing-Zhu Yin, Li-Xin Wu.   

Abstract

In the title mol-ecule, C(14)H(18)OS(8), one O atom, two S atoms and six C atoms form an 11-membered ring with a chair-like conformation; the planes of the two five-membered rings connected by a carbon-carbon double bond form a dihedral angle of 29.97 (11)°. In the crystal, pairs of weak inter-molecular C-H⋯S hydrogen bonds link two mol-ecules into inversion dimers.

Entities:  

Year:  2009        PMID: 21577982      PMCID: PMC2970471          DOI: 10.1107/S1600536809037301

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to crown ether-annulated 1,3-dithiol-2-thio­nes, see: Hansen et al. (1993 ▶). For the synthesis, see: Chen et al. (2005 ▶). For a related structure, see: Hou et al. (2009 ▶)

Experimental

Crystal data

C14H18OS8 M = 458.76 Triclinic, a = 8.4542 (17) Å b = 10.158 (2) Å c = 13.612 (3) Å α = 105.00 (3)° β = 97.83 (3)° γ = 112.22 (3)° V = 1008.8 (3) Å3 Z = 2 Mo Kα radiation μ = 0.88 mm−1 T = 291 K 0.14 × 0.12 × 0.12 mm

Data collection

Rigaku R-AXIS RAPID diffractometer Absorption correction: multi-scan (ABSCOR; Higashi, 1995 ▶) T min = 0.886, T max = 0.901 9961 measured reflections 4572 independent reflections 3655 reflections with I > 2σ(I) R int = 0.032

Refinement

R[F 2 > 2σ(F 2)] = 0.056 wR(F 2) = 0.170 S = 1.10 4572 reflections 210 parameters 18 restraints H-atom parameters constrained Δρmax = 1.09 e Å−3 Δρmin = −0.64 e Å−3 Data collection: RAPID-AUTO (Rigaku, 1998 ▶); cell refinement: RAPID-AUTO; data reduction: CrystalStructure (Rigaku/MSC, 2002 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809037301/ng2642sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809037301/ng2642Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C14H18OS8Z = 2
Mr = 458.76F(000) = 476
Triclinic, P1Dx = 1.510 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.4542 (17) ÅCell parameters from 8201 reflections
b = 10.158 (2) Åθ = 3.1–27.5°
c = 13.612 (3) ŵ = 0.88 mm1
α = 105.00 (3)°T = 291 K
β = 97.83 (3)°Block, yellow
γ = 112.22 (3)°0.14 × 0.12 × 0.12 mm
V = 1008.8 (3) Å3
Rigaku R-AXIS RAPID diffractometer4572 independent reflections
Radiation source: fine-focus sealed tube3655 reflections with I > 2σ(I)
graphiteRint = 0.032
ω scansθmax = 27.5°, θmin = 3.1°
Absorption correction: multi-scan (ABSCOR; Higashi, 1995)h = −10→10
Tmin = 0.886, Tmax = 0.901k = −11→13
9961 measured reflectionsl = −17→17
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.056Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.170H-atom parameters constrained
S = 1.10w = 1/[σ2(Fo2) + (0.0884P)2 + 0.6622P] where P = (Fo2 + 2Fc2)/3
4572 reflections(Δ/σ)max = 0.016
210 parametersΔρmax = 1.09 e Å3
18 restraintsΔρmin = −0.64 e Å3
Experimental. (See detailed section in the paper)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.0932 (11)0.6629 (10)0.3460 (6)0.147 (3)
H1A0.19230.74840.34430.220*
H1B0.00940.69540.37200.220*
H1C0.03780.59040.27610.220*
C20.3190 (6)0.5333 (5)0.3702 (3)0.0698 (11)
C30.4341 (5)0.4102 (4)0.2243 (3)0.0507 (7)
C40.4512 (4)0.3545 (3)0.1275 (2)0.0461 (7)
C50.3940 (4)0.2608 (3)−0.0741 (2)0.0413 (6)
C60.2894 (5)0.2050 (4)−0.1861 (3)0.0525 (8)
H6A0.36910.2087−0.23140.063*
H6B0.23660.2724−0.19490.063*
C70.2424 (8)−0.0950 (6)−0.2145 (6)0.1025 (17)
H7A0.3145−0.0519−0.14230.123*
H7B0.1583−0.1969−0.22400.123*
C80.3534 (6)−0.1067 (5)−0.2800 (5)0.0943 (17)
H8A0.2905−0.1288−0.35170.113*
H8B0.3794−0.1915−0.27860.113*
C90.6658 (6)0.0075 (5)−0.2091 (4)0.0740 (12)
H9A0.75260.0358−0.24870.089*
H9B0.6321−0.0978−0.21660.089*
C100.7491 (5)0.1017 (4)−0.0953 (3)0.0649 (10)
H10A0.82650.0635−0.06600.078*
H10B0.65630.0882−0.05890.078*
C110.7040 (4)0.3605 (4)−0.0996 (3)0.0469 (7)
H11A0.75890.4682−0.08740.056*
H11B0.64380.3094−0.17400.056*
C120.5700 (4)0.3284 (3)−0.0371 (2)0.0407 (6)
C130.4928 (6)0.6013 (4)0.4070 (3)0.0661 (10)
C140.7619 (13)0.8815 (12)0.4955 (7)0.176 (4)
H14A0.82390.83680.45450.264*
H14B0.84420.95980.55870.264*
H14C0.70530.92390.45520.264*
O10.5140 (4)0.0229 (3)−0.2531 (2)0.0707 (7)
S10.1683 (2)0.5780 (2)0.43099 (13)0.1162 (6)
S20.22953 (15)0.37585 (11)0.25246 (8)0.0674 (3)
S30.26931 (11)0.23691 (10)0.01898 (7)0.0513 (2)
S40.11564 (12)0.01405 (12)−0.22817 (9)0.0704 (3)
S50.87487 (12)0.30094 (10)−0.06741 (8)0.0602 (3)
S60.65644 (11)0.38520 (10)0.10015 (6)0.0504 (2)
S70.61409 (14)0.52278 (11)0.33593 (7)0.0619 (3)
S80.6096 (2)0.74971 (15)0.52682 (9)0.1030 (5)
U11U22U33U12U13U23
C10.123 (4)0.173 (5)0.156 (5)0.087 (4)0.053 (4)0.031 (4)
C20.087 (3)0.059 (2)0.060 (2)0.022 (2)0.044 (2)0.0171 (18)
C30.062 (2)0.0419 (16)0.0491 (17)0.0220 (15)0.0185 (14)0.0151 (13)
C40.0529 (18)0.0395 (15)0.0474 (16)0.0223 (13)0.0130 (13)0.0134 (13)
C50.0474 (16)0.0328 (13)0.0428 (15)0.0202 (12)0.0075 (12)0.0091 (11)
C60.0540 (19)0.0458 (17)0.0492 (17)0.0240 (15)−0.0016 (14)0.0069 (14)
C70.090 (3)0.068 (3)0.143 (4)0.032 (2)0.033 (3)0.029 (3)
C80.068 (3)0.057 (2)0.122 (4)0.027 (2)0.009 (3)−0.017 (3)
C90.065 (2)0.053 (2)0.098 (3)0.0339 (19)0.016 (2)0.005 (2)
C100.063 (2)0.0484 (19)0.089 (3)0.0315 (18)0.0179 (19)0.0217 (19)
C110.0480 (17)0.0389 (15)0.0520 (17)0.0195 (13)0.0122 (13)0.0119 (13)
C120.0467 (16)0.0331 (13)0.0423 (15)0.0210 (12)0.0087 (12)0.0083 (11)
C130.089 (3)0.0504 (19)0.0500 (19)0.019 (2)0.0335 (19)0.0126 (16)
C140.172 (5)0.168 (5)0.142 (5)0.025 (4)0.065 (4)0.040 (4)
O10.0666 (17)0.0519 (15)0.090 (2)0.0287 (13)0.0162 (14)0.0151 (14)
S10.1153 (12)0.1136 (11)0.1043 (11)0.0336 (9)0.0798 (10)0.0109 (9)
S20.0694 (6)0.0561 (5)0.0642 (6)0.0132 (5)0.0322 (5)0.0144 (4)
S30.0450 (4)0.0472 (4)0.0537 (5)0.0173 (3)0.0116 (3)0.0093 (3)
S40.0446 (5)0.0586 (6)0.0766 (7)0.0161 (4)0.0007 (4)−0.0092 (5)
S50.0433 (5)0.0514 (5)0.0791 (6)0.0218 (4)0.0133 (4)0.0108 (4)
S60.0480 (4)0.0542 (5)0.0435 (4)0.0262 (4)0.0036 (3)0.0059 (3)
S70.0723 (6)0.0586 (5)0.0457 (5)0.0226 (5)0.0151 (4)0.0123 (4)
S80.1440 (13)0.0685 (7)0.0543 (6)0.0108 (8)0.0411 (7)0.0005 (5)
C1—S11.794 (9)C8—O11.405 (6)
C1—H1A0.9600C8—H8A0.9700
C1—H1B0.9600C8—H8B0.9700
C1—H1C0.9600C9—O11.421 (5)
C2—C131.319 (7)C9—C101.495 (6)
C2—S11.744 (4)C9—H9A0.9700
C2—S21.768 (4)C9—H9B0.9700
C3—C41.344 (5)C10—S51.798 (4)
C3—S21.747 (4)C10—H10A0.9700
C3—S71.756 (4)C10—H10B0.9700
C4—S31.747 (3)C11—C121.498 (4)
C4—S61.753 (3)C11—S51.809 (3)
C5—C121.335 (4)C11—H11A0.9700
C5—C61.496 (4)C11—H11B0.9700
C5—S31.762 (3)C12—S61.763 (3)
C6—S41.814 (4)C13—S81.752 (4)
C6—H6A0.9700C13—S71.765 (4)
C6—H6B0.9700C14—S81.665 (9)
C7—C81.397 (8)C14—H14A0.9600
C7—S41.833 (6)C14—H14B0.9600
C7—H7A0.9700C14—H14C0.9600
C7—H7B0.9700
S1—C1—H1A109.5C10—C9—H9A108.9
S1—C1—H1B109.5O1—C9—H9B108.9
H1A—C1—H1B109.5C10—C9—H9B108.9
S1—C1—H1C109.5H9A—C9—H9B107.7
H1A—C1—H1C109.5C9—C10—S5116.1 (3)
H1B—C1—H1C109.5C9—C10—H10A108.3
C13—C2—S1125.9 (3)S5—C10—H10A108.3
C13—C2—S2117.2 (3)C9—C10—H10B108.3
S1—C2—S2116.8 (3)S5—C10—H10B108.3
C4—C3—S2123.3 (3)H10A—C10—H10B107.4
C4—C3—S7123.7 (3)C12—C11—S5113.4 (2)
S2—C3—S7112.98 (18)C12—C11—H11A108.9
C3—C4—S3122.6 (3)S5—C11—H11A108.9
C3—C4—S6123.2 (3)C12—C11—H11B108.9
S3—C4—S6114.08 (18)S5—C11—H11B108.9
C12—C5—C6127.3 (3)H11A—C11—H11B107.7
C12—C5—S3116.9 (2)C5—C12—C11127.1 (3)
C6—C5—S3115.8 (2)C5—C12—S6117.2 (2)
C5—C6—S4113.5 (3)C11—C12—S6115.7 (2)
C5—C6—H6A108.9C2—C13—S8125.2 (3)
S4—C6—H6A108.9C2—C13—S7116.7 (3)
C5—C6—H6B108.9S8—C13—S7117.7 (3)
S4—C6—H6B108.9S8—C14—H14A109.5
H6A—C6—H6B107.7S8—C14—H14B109.5
C8—C7—S4119.7 (5)H14A—C14—H14B109.5
C8—C7—H7A107.4S8—C14—H14C109.5
S4—C7—H7A107.4H14A—C14—H14C109.5
C8—C7—H7B107.4H14B—C14—H14C109.5
S4—C7—H7B107.4C8—O1—C9114.7 (4)
H7A—C7—H7B106.9C2—S1—C1100.8 (3)
C7—C8—O1114.6 (4)C3—S2—C294.04 (19)
C7—C8—H8A108.6C4—S3—C594.20 (15)
O1—C8—H8A108.6C6—S4—C7102.0 (2)
C7—C8—H8B108.6C10—S5—C11102.29 (17)
O1—C8—H8B108.6C4—S6—C1293.92 (15)
H8A—C8—H8B107.6C3—S7—C1394.02 (19)
O1—C9—C10113.4 (3)C14—S8—C13104.6 (3)
O1—C9—H9A108.9
D—H···AD—HH···AD···AD—H···A
C7—H7B···S2i0.973.003.793 (6)140
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C7—H7B⋯S2i0.973.003.793 (6)140

Symmetry code: (i) .

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1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  4,6,7,9,10,12-Hexahydro-1,3-dithiolo[4,5-f][1,4,9]oxadithia-cyclo-undecine-2-thione.

Authors:  Rui-Bin Hou; Bao Li; Bing-Zhu Yin; Li-Xin Wu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-06-27

3.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  3 in total
  2 in total

1.  6,7-Bis(methyl-sulfan-yl)-2,3-[(3,6,9-trioxaundecane-1,11-di-yl)bis-(sulfanediylmethyl-ene)]-1,4,5,8-tetra-thia-fulvalene.

Authors:  Rui-Bin Hou; Bao Li; Bing-Zhu Yin; Li-Xin Wu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-04-10

2.  4,6,7,9,10,12,13,15,16,18-Decahydro-1,3-dithiolo[4,5-l][1,4,7,10,15]trioxadithia-cyclo-hepta-decine-2-thione.

Authors:  Rui-Bin Hou; Bao Li; Bing-Zhu Yin; Li-Xin Wu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-05-15
  2 in total

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