Literature DB >> 21579074

2-Chloro-8-methyl-3-[(pyrimidin-4-yl-oxy)meth-yl]quinoline.

F Nawaz Khan, S Mohana Roopan, Venkatesha R Hathwar, Mehmet Akkurt.   

Abstract

In the title compound, C(15)H(12)ClN(3)O, the quinoline ring system is essentially planar, with a maximum deviation of 0.017 (1) Å. The crystal packing is stabilized by π-π stacking inter-actions between the quinoline rings of adjacent mol-ecule, with a centroid-centroid distance of 3.5913 (8) Å. A weak C-H⋯π contact is also observed between mol-ecules.

Entities:  

Year:  2010        PMID: 21579074      PMCID: PMC2979073          DOI: 10.1107/S1600536810011694

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For pyrimidine analogues, see: Svenstrup et al. (2008 ▶). For quinoline analogues, see: Roopan & Khan (2009 ▶); Khan et al. (2009 ▶, 2010a ▶,b ▶). For the biological activity and mode of action of alkyl­ating agent, see: Singer (1986 ▶). For the synthesis and regioselective alkyl­ation of 4(3H)-pyrimidone, see: Roopan et al. (2010 ▶). For bond-length data, see: Allen et al. (1987 ▶). For a structural discussion on hydrogen bonding, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C15H12ClN3O M = 285.73 Monoclinic, a = 11.9975 (2) Å b = 8.45037 (15) Å c = 12.95869 (19) Å β = 96.7619 (16)° V = 1304.66 (4) Å3 Z = 4 Mo Kα radiation μ = 0.29 mm−1 T = 295 K 0.23 × 0.18 × 0.15 mm

Data collection

Oxford Xcalibur Eos (Nova) CCD detector diffractometer Absorption correction: multi-scan (CrysAlis PRO RED; Oxford Diffraction, 2009 ▶) T min = 0.936, T max = 0.958 13753 measured reflections 2564 independent reflections 2005 reflections with I > 2σ(I) R int = 0.031

Refinement

R[F 2 > 2σ(F 2)] = 0.033 wR(F 2) = 0.089 S = 1.07 2564 reflections 182 parameters H-atom parameters constrained Δρmax = 0.18 e Å−3 Δρmin = −0.20 e Å−3 Data collection: CrysAlis PRO CCD (Oxford Diffraction, 2009 ▶); cell refinement: CrysAlis PRO CCD; data reduction: CrysAlis PRO RED (Oxford Diffraction, 2009 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810011694/fj2289sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810011694/fj2289Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H12ClN3OF(000) = 592
Mr = 285.73Dx = 1.455 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 1065 reflections
a = 11.9975 (2) Åθ = 2.5–26.0°
b = 8.45037 (15) ŵ = 0.29 mm1
c = 12.95869 (19) ÅT = 295 K
β = 96.7619 (16)°Prism, colourless
V = 1304.66 (4) Å30.23 × 0.18 × 0.15 mm
Z = 4
Oxford Xcalibur Eos (Nova) CCD detector diffractometer2564 independent reflections
Radiation source: Enhance (Mo) X-ray Source2005 reflections with I > 2σ(I)
graphiteRint = 0.031
ω scansθmax = 26.0°, θmin = 2.5°
Absorption correction: multi-scan (CrysAlis PRO RED; Oxford Diffraction, 2009)h = −14→14
Tmin = 0.936, Tmax = 0.958k = −10→10
13753 measured reflectionsl = −15→15
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.033Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.089H-atom parameters constrained
S = 1.07w = 1/[σ2(Fo2) + (0.0503P)2] where P = (Fo2 + 2Fc2)/3
2564 reflections(Δ/σ)max < 0.001
182 parametersΔρmax = 0.18 e Å3
0 restraintsΔρmin = −0.20 e Å3
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell esds are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement on F2 for ALL reflections except those flagged by the user for potential systematic errors. Weighted R-factors wR and all goodnesses of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The observed criterion of F2 > σ(F2) is used only for calculating -R-factor-obs etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.52448 (3)0.22861 (5)−0.21533 (3)0.0452 (2)
O10.35909 (9)0.13571 (11)0.06428 (7)0.0413 (4)
N10.66190 (10)0.38546 (12)−0.08362 (8)0.0315 (4)
N20.22497 (11)−0.02532 (14)−0.02386 (9)0.0398 (4)
N30.08616 (12)−0.14701 (16)0.06771 (13)0.0569 (6)
C10.57162 (12)0.30022 (16)−0.09125 (10)0.0297 (4)
C20.50756 (12)0.25855 (14)−0.01007 (10)0.0282 (4)
C30.54805 (12)0.31329 (15)0.08638 (10)0.0299 (4)
C40.69272 (13)0.46034 (15)0.20041 (11)0.0365 (5)
C50.78847 (14)0.54796 (16)0.20983 (12)0.0418 (5)
C60.84248 (13)0.58407 (16)0.12263 (12)0.0399 (5)
C70.80215 (13)0.53220 (16)0.02491 (11)0.0345 (5)
C80.70266 (12)0.43947 (15)0.01381 (10)0.0291 (4)
C90.64712 (12)0.40438 (15)0.10159 (10)0.0296 (4)
C100.40366 (12)0.16051 (16)−0.03229 (10)0.0327 (5)
C110.26755 (13)0.04265 (16)0.06302 (11)0.0344 (5)
C120.22415 (15)0.02264 (18)0.15667 (12)0.0459 (6)
C130.13310 (16)−0.0742 (2)0.15376 (15)0.0551 (7)
C140.13543 (15)−0.11672 (19)−0.01572 (14)0.0514 (6)
C150.86040 (14)0.57135 (18)−0.06845 (13)0.0465 (6)
H30.509700.290100.142800.0360*
H40.657400.437300.258800.0440*
H50.818500.584400.275000.0500*
H60.907500.644900.131200.0480*
H10A0.349100.21490−0.081000.0390*
H10B0.421400.05980−0.062400.0390*
H120.255200.072100.217500.0550*
H130.10170−0.090800.215200.0660*
H140.10390−0.16500−0.076800.0620*
H15A0.923900.63810−0.047800.0700*
H15B0.809200.62550−0.119000.0700*
H15C0.885300.47550−0.098200.0700*
U11U22U33U12U13U23
Cl10.0438 (3)0.0642 (3)0.0278 (2)−0.0083 (2)0.0045 (2)−0.0068 (2)
O10.0385 (7)0.0543 (6)0.0322 (6)−0.0162 (5)0.0092 (5)−0.0009 (5)
N10.0286 (7)0.0364 (6)0.0301 (6)0.0026 (5)0.0059 (5)0.0019 (5)
N20.0355 (8)0.0428 (7)0.0406 (7)−0.0044 (6)0.0027 (6)0.0005 (6)
N30.0425 (10)0.0507 (9)0.0792 (11)−0.0086 (7)0.0143 (8)0.0065 (8)
C10.0293 (8)0.0340 (7)0.0259 (7)0.0036 (6)0.0034 (6)−0.0007 (5)
C20.0268 (8)0.0278 (7)0.0303 (7)0.0045 (6)0.0046 (6)0.0023 (6)
C30.0307 (9)0.0319 (7)0.0280 (7)0.0033 (6)0.0078 (6)0.0029 (6)
C40.0409 (10)0.0368 (8)0.0313 (8)0.0009 (7)0.0025 (7)0.0009 (6)
C50.0469 (11)0.0396 (8)0.0362 (8)0.0005 (7)−0.0062 (7)−0.0046 (6)
C60.0315 (9)0.0359 (8)0.0507 (9)−0.0041 (7)−0.0015 (7)−0.0012 (7)
C70.0306 (9)0.0316 (8)0.0418 (8)0.0017 (6)0.0060 (7)0.0014 (6)
C80.0279 (8)0.0285 (7)0.0309 (7)0.0037 (6)0.0035 (6)0.0006 (5)
C90.0297 (8)0.0279 (7)0.0310 (7)0.0037 (6)0.0029 (6)0.0021 (5)
C100.0310 (9)0.0386 (8)0.0288 (7)−0.0009 (6)0.0054 (6)0.0011 (6)
C110.0295 (9)0.0343 (8)0.0399 (8)−0.0010 (6)0.0063 (7)0.0045 (6)
C120.0498 (11)0.0489 (9)0.0417 (9)−0.0058 (8)0.0165 (8)0.0004 (7)
C130.0533 (12)0.0523 (10)0.0647 (12)−0.0042 (9)0.0281 (10)0.0087 (9)
C140.0422 (11)0.0501 (10)0.0605 (11)−0.0089 (8)0.0008 (9)−0.0019 (8)
C150.0387 (10)0.0498 (10)0.0526 (10)−0.0108 (8)0.0119 (8)0.0019 (7)
Cl1—C11.7485 (14)C7—C81.421 (2)
O1—C101.4330 (16)C7—C151.504 (2)
O1—C111.3493 (18)C8—C91.4158 (19)
N1—C11.2948 (18)C11—C121.386 (2)
N1—C81.3770 (17)C12—C131.362 (3)
N2—C111.3126 (18)C3—H30.9300
N2—C141.337 (2)C4—H40.9300
N3—C131.338 (2)C5—H50.9300
N3—C141.317 (2)C6—H60.9300
C1—C21.4184 (19)C10—H10A0.9700
C2—C31.3672 (18)C10—H10B0.9700
C2—C101.496 (2)C12—H120.9300
C3—C91.410 (2)C13—H130.9300
C4—C51.360 (2)C14—H140.9300
C4—C91.4134 (19)C15—H15A0.9600
C5—C61.401 (2)C15—H15B0.9600
C6—C71.373 (2)C15—H15C0.9600
Cl1···C15i3.5264 (17)C5···H10Avi2.9800
Cl1···H10A2.8900C6···H10Avi2.8600
Cl1···H10B2.8400C7···H10Avi2.9500
Cl1···H14ii3.0800C10···H10Bv2.9600
O1···H32.3600C11···H15Bvi3.0700
N1···H15B2.7600C12···H15Bvi3.0300
N1···H15C2.8100H3···O12.3600
N2···H10A2.6700H3···H42.5100
N2···H10B2.5700H4···H32.5100
N2···H4iii2.9300H4···N2ix2.9300
N3···H15Aiv2.9400H5···C3x2.9800
N3···H15Cv2.8200H6···H15A2.3500
C1···C3vi3.5712 (19)H10A···Cl12.8900
C1···C11v3.476 (2)H10A···N22.6700
C2···C8vi3.5842 (19)H10A···C5vi2.9800
C2···C9vi3.5278 (18)H10A···C6vi2.8600
C3···C1vi3.5712 (19)H10A···C7vi2.9500
C7···C14v3.595 (2)H10B···Cl12.8400
C7···C10vi3.592 (2)H10B···N22.5700
C8···C2vi3.5842 (19)H10B···C2v2.9400
C8···C14v3.347 (2)H10B···C10v2.9600
C9···C2vi3.5278 (18)H10B···H10Bv2.5400
C10···C7vi3.592 (2)H14···Cl1xi3.0800
C10···C10v3.598 (2)H15A···N3xii2.9400
C11···C1v3.476 (2)H15A···H62.3500
C14···C8v3.347 (2)H15B···N12.7600
C14···C7v3.595 (2)H15B···C11vi3.0700
C15···Cl1vii3.5264 (17)H15B···C12vi3.0300
C2···H10Bv2.9400H15C···N12.8100
C3···H5viii2.9800H15C···N3v2.8200
C10—O1—C11117.49 (10)N3—C13—C12123.83 (17)
C1—N1—C8117.26 (11)N2—C14—N3128.27 (16)
C11—N2—C14114.85 (13)C2—C3—H3119.00
C13—N3—C14114.15 (15)C9—C3—H3119.00
Cl1—C1—N1116.09 (10)C5—C4—H4120.00
Cl1—C1—C2116.83 (10)C9—C4—H4120.00
N1—C1—C2127.08 (12)C4—C5—H5120.00
C1—C2—C3115.39 (12)C6—C5—H5120.00
C1—C2—C10120.44 (11)C5—C6—H6119.00
C3—C2—C10124.17 (12)C7—C6—H6119.00
C2—C3—C9121.02 (12)O1—C10—H10A110.00
C5—C4—C9119.75 (14)O1—C10—H10B110.00
C4—C5—C6120.81 (14)C2—C10—H10A110.00
C5—C6—C7121.88 (14)C2—C10—H10B110.00
C6—C7—C8118.03 (13)H10A—C10—H10B108.00
C6—C7—C15121.68 (14)C11—C12—H12122.00
C8—C7—C15120.29 (13)C13—C12—H12122.00
N1—C8—C7118.62 (12)N3—C13—H13118.00
N1—C8—C9121.15 (12)C12—C13—H13118.00
C7—C8—C9120.23 (12)N2—C14—H14116.00
C3—C9—C4122.63 (12)N3—C14—H14116.00
C3—C9—C8118.08 (12)C7—C15—H15A109.00
C4—C9—C8119.29 (13)C7—C15—H15B109.00
O1—C10—C2107.52 (10)C7—C15—H15C109.00
O1—C11—N2119.96 (13)H15A—C15—H15B109.00
O1—C11—C12116.72 (13)H15A—C15—H15C109.00
N2—C11—C12123.31 (14)H15B—C15—H15C109.00
C11—C12—C13115.58 (15)
C11—O1—C10—C2−176.75 (11)C2—C3—C9—C4−178.71 (13)
C10—O1—C11—N22.21 (19)C2—C3—C9—C80.9 (2)
C10—O1—C11—C12−178.68 (13)C9—C4—C5—C60.2 (2)
C8—N1—C1—Cl1−178.15 (10)C5—C4—C9—C3−179.87 (13)
C8—N1—C1—C21.6 (2)C5—C4—C9—C80.6 (2)
C1—N1—C8—C7179.47 (12)C4—C5—C6—C7−0.5 (2)
C1—N1—C8—C9−0.69 (19)C5—C6—C7—C80.0 (2)
C14—N2—C11—O1179.03 (13)C5—C6—C7—C15179.97 (14)
C14—N2—C11—C120.0 (2)C6—C7—C8—N1−179.40 (12)
C11—N2—C14—N3−0.5 (2)C6—C7—C8—C90.8 (2)
C14—N3—C13—C12−0.3 (2)C15—C7—C8—N10.6 (2)
C13—N3—C14—N20.6 (3)C15—C7—C8—C9−179.20 (13)
Cl1—C1—C2—C3178.55 (10)N1—C8—C9—C3−0.48 (19)
Cl1—C1—C2—C10−1.18 (17)N1—C8—C9—C4179.12 (12)
N1—C1—C2—C3−1.2 (2)C7—C8—C9—C3179.36 (12)
N1—C1—C2—C10179.08 (13)C7—C8—C9—C4−1.0 (2)
C1—C2—C3—C9−0.14 (19)O1—C11—C12—C13−178.79 (14)
C10—C2—C3—C9179.58 (12)N2—C11—C12—C130.3 (2)
C1—C2—C10—O1178.90 (11)C11—C12—C13—N3−0.1 (3)
C3—C2—C10—O1−0.80 (18)
Cg3 is the centroid of the C4–C9 ring.
D—H···AD—HH···AD···AD—H···A
C3—H3···O10.932.362.7056 (17)102
C10—H10A···Cg3vi0.972.723.5132 (15)140
Table 1

Hydrogen-bond geometry (Å, °)

Cg3 is the centroid of the C4–C9 ring.

D—H⋯AD—HH⋯ADAD—H⋯A
C10—H10ACg3i0.972.723.5132 (15)140

Symmetry code: (i) .

  7 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

Review 2.  O-alkyl pyrimidines in mutagenesis and carcinogenesis: occurrence and significance.

Authors:  B Singer
Journal:  Cancer Res       Date:  1986-10       Impact factor: 12.701

3.  2-Chloro-3-hydroxy-methyl-7,8-dimethyl-quinoline.

Authors:  F Nawaz Khan; S Mohana Roopan; Venkatesha R Hathwar; Seik Weng Ng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-12-19

4.  2-Chloro-3-hydroxy-methyl-6-methoxy-quinoline.

Authors:  F Nawaz Khan; S Mohana Roopan; Venkatesha R Hathwar; Seik Weng Ng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-12-19

5.  Improved synthesis of antibacterial 3-substituted 6-anilinouracils.

Authors:  Niels Svenstrup; Alexander Kuhl; Kerstin Ehlert; Dieter Häbich
Journal:  Bioorg Med Chem Lett       Date:  2008-04-26       Impact factor: 2.823

6.  2-Chloro-6-methyl-quinoline-3-carbaldehyde.

Authors:  F Nawaz Khan; R Subashini; S Mohana Roopan; Venkatesha R Hathwar; Seik Weng Ng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-10-10

7.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  7 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.