Literature DB >> 21579071

Di-μ-thio-cyanato-κN:N-bis-({5-meth-oxy-2-[3-(methyl-amino)propyl-imino-meth-yl]phenolato-κO,N,N'}copper(II)).

Nong Wang1, Rui Xue, Bo Li, Yu-Ping Yang, Min Cao.   

Abstract

The title thio-cyanate-bridged dinuclear copper(II) complex, [Cu(2)(C(12)H(17)N(2)O(2))(2)(NCS)(2)], possesses crystallographic inversion symmetry. Each Cu(II) atom is five-coordinated by one imine N, one amine N and one phenolate O atom of the Schiff base ligand, and by two N atoms from two bridging thio-cyanate ligands, forming a square-pyramidal geometry. Beside the two thio-cyanate bridges, there are two intra-molecular N-H⋯O hydrogen bonds, which further link the two Cu(C(12)H(17)N(2)O(2))(NCS) units. The CuCu separation is 3.261 (2) Å. Parts of the methylaminopropylimino segment are disordered over two sites with occupancies of 0.669(9) and 0.331(9).

Entities:  

Year:  2010        PMID: 21579071      PMCID: PMC2979178          DOI: 10.1107/S1600536810015564

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to copper complexes, see: Reddy et al. (2000 ▶); Ray et al. (2003 ▶); Arnold et al. (2003 ▶); Raptopoulou et al. (1998 ▶). For our previous reports of copper(II) complexes, see: Wang & Li (2005 ▶); Wang et al. (2006 ▶). For related structures, see: Elmali et al. (2000 ▶); You & Zhu (2005 ▶); Liu et al. (2004 ▶); Datta et al. (2008 ▶); Habibi et al. (2007 ▶).

Experimental

Crystal data

[Cu2(C12H17N2O2)2(NCS)2] M = 685.79 Monoclinic, a = 11.8003 (18) Å b = 15.373 (2) Å c = 8.6740 (13) Å β = 108.972 (7)° V = 1488.0 (4) Å3 Z = 2 Mo Kα radiation μ = 1.61 mm−1 T = 298 K 0.20 × 0.20 × 0.18 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.739, T max = 0.760 9297 measured reflections 3544 independent reflections 2496 reflections with I > 2σ(I) R int = 0.030

Refinement

R[F 2 > 2σ(F 2)] = 0.040 wR(F 2) = 0.108 S = 1.05 3544 reflections 211 parameters 50 restraints H-atom parameters constrained Δρmax = 0.48 e Å−3 Δρmin = −0.41 e Å−3 Data collection: SMART (Bruker, 1998 ▶); cell refinement: SAINT (Bruker, 1998 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810015564/ci5079sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810015564/ci5079Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cu2(C12H17N2O2)2(NCS)2]F(000) = 708
Mr = 685.79Dx = 1.531 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 2304 reflections
a = 11.8003 (18) Åθ = 2.5–25.1°
b = 15.373 (2) ŵ = 1.61 mm1
c = 8.6740 (13) ÅT = 298 K
β = 108.972 (7)°Block, blue
V = 1488.0 (4) Å30.20 × 0.20 × 0.18 mm
Z = 2
Bruker SMART CCD area-detector diffractometer3544 independent reflections
Radiation source: fine-focus sealed tube2496 reflections with I > 2σ(I)
graphiteRint = 0.030
ω scansθmax = 28.5°, θmin = 1.8°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −15→15
Tmin = 0.739, Tmax = 0.760k = −20→19
9297 measured reflectionsl = −11→10
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.040Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.108H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.0508P)2 + 0.2175P] where P = (Fo2 + 2Fc2)/3
3544 reflections(Δ/σ)max = 0.001
211 parametersΔρmax = 0.48 e Å3
50 restraintsΔρmin = −0.41 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
Cu10.44981 (3)0.09693 (2)0.01842 (4)0.04380 (14)
S10.77288 (9)0.09042 (7)−0.17937 (13)0.0751 (3)
O10.33324 (18)0.07895 (14)−0.1912 (2)0.0557 (6)
O2−0.03088 (19)0.11364 (15)−0.6308 (3)0.0612 (6)
N10.3347 (2)0.14948 (17)0.1093 (3)0.0578 (7)
N20.5877 (3)0.1033 (2)0.2257 (4)0.0775 (10)
H2A0.63210.05480.22620.093*0.669 (9)
H2B0.63240.05720.21740.093*0.331 (9)
N30.5707 (2)0.06534 (19)−0.0884 (3)0.0608 (7)
C10.1697 (2)0.15468 (16)−0.1467 (3)0.0412 (6)
C20.2230 (2)0.10933 (17)−0.2462 (4)0.0433 (7)
C30.1564 (3)0.09443 (17)−0.4110 (4)0.0447 (7)
H30.19060.0638−0.47740.054*
C40.0408 (2)0.12515 (19)−0.4741 (4)0.0458 (7)
C5−0.0121 (3)0.1713 (2)−0.3762 (4)0.0558 (8)
H5−0.08970.1925−0.42010.067*
C60.0507 (3)0.18466 (18)−0.2176 (4)0.0516 (7)
H60.01450.2146−0.15280.062*
C70.0149 (3)0.0685 (2)−0.7408 (4)0.0664 (9)
H7A0.08270.0993−0.75130.080*
H7B−0.04610.0646−0.84540.080*
H7C0.03910.0110−0.69980.080*
C80.2262 (3)0.16936 (18)0.0221 (4)0.0516 (7)
H80.17990.19650.07680.062*
C90.3506 (5)0.1469 (5)0.2885 (6)0.0633 (17)0.669 (9)
H9A0.33220.08890.31780.076*0.669 (9)
H9B0.29510.18720.31170.076*0.669 (9)
C100.4770 (5)0.1705 (5)0.3900 (8)0.068 (2)0.669 (9)
H10A0.49720.22590.35220.082*0.669 (9)
H10B0.47980.17800.50220.082*0.669 (9)
C110.5706 (8)0.1048 (6)0.3857 (7)0.080 (3)0.669 (9)
H11A0.64590.11910.46890.096*0.669 (9)
H11B0.54620.04750.40980.096*0.669 (9)
C9A0.3884 (12)0.1980 (8)0.2722 (11)0.068 (4)0.331 (9)
H9AA0.44890.23910.26550.082*0.331 (9)
H9AB0.32650.22930.30040.082*0.331 (9)
C10A0.4432 (15)0.1287 (10)0.397 (2)0.086 (5)0.331 (9)
H10C0.38080.08880.40190.103*0.331 (9)
H10D0.47580.15590.50330.103*0.331 (9)
C11A0.5414 (14)0.0777 (10)0.3617 (15)0.085 (6)0.331 (9)
H11C0.60960.07730.46130.102*0.331 (9)
H11D0.51370.01810.34140.102*0.331 (9)
C120.6695 (4)0.1786 (3)0.2263 (7)0.1234 (19)
H12A0.62820.23230.22760.148*
H12B0.69300.17620.13030.148*
H12C0.73940.17530.32140.148*
C130.6548 (3)0.07722 (19)−0.1263 (4)0.0500 (7)
U11U22U33U12U13U23
Cu10.0406 (2)0.0484 (2)0.0408 (2)0.00958 (15)0.01100 (16)−0.00055 (14)
S10.0543 (5)0.1109 (8)0.0669 (6)−0.0065 (5)0.0290 (5)0.0033 (5)
O10.0440 (12)0.0789 (15)0.0409 (11)0.0279 (10)0.0095 (9)−0.0046 (10)
O20.0424 (12)0.0714 (15)0.0598 (15)0.0034 (10)0.0026 (11)−0.0030 (11)
N10.0597 (16)0.0727 (18)0.0399 (14)0.0239 (14)0.0149 (13)−0.0057 (12)
N20.0566 (18)0.093 (2)0.063 (2)0.0254 (16)−0.0074 (15)−0.0285 (16)
N30.0474 (15)0.0776 (18)0.0592 (17)0.0080 (14)0.0195 (14)0.0049 (14)
C10.0389 (14)0.0394 (14)0.0484 (16)0.0053 (12)0.0185 (13)0.0028 (12)
C20.0404 (15)0.0425 (16)0.0472 (17)0.0080 (12)0.0146 (13)0.0073 (12)
C30.0411 (15)0.0495 (16)0.0435 (16)0.0043 (12)0.0140 (13)0.0037 (12)
C40.0387 (16)0.0446 (15)0.0500 (17)0.0000 (12)0.0088 (14)0.0074 (13)
C50.0328 (15)0.0577 (19)0.073 (2)0.0075 (13)0.0113 (16)0.0021 (16)
C60.0410 (16)0.0481 (17)0.070 (2)0.0043 (13)0.0239 (16)−0.0047 (14)
C70.061 (2)0.079 (2)0.0491 (19)−0.0022 (18)0.0044 (17)0.0007 (17)
C80.0577 (19)0.0498 (17)0.0539 (18)0.0126 (14)0.0271 (16)0.0011 (14)
C90.072 (4)0.075 (4)0.044 (3)0.013 (3)0.021 (3)−0.004 (3)
C100.080 (4)0.073 (4)0.042 (3)0.010 (3)0.007 (3)−0.021 (3)
C110.104 (5)0.086 (5)0.030 (3)0.029 (4)−0.007 (3)−0.017 (3)
C9A0.070 (7)0.080 (7)0.053 (6)0.028 (6)0.018 (5)−0.008 (5)
C10A0.089 (9)0.106 (9)0.062 (7)0.005 (7)0.024 (7)0.018 (7)
C11A0.100 (9)0.085 (8)0.038 (7)0.041 (7)−0.022 (6)−0.032 (6)
C120.066 (3)0.138 (4)0.148 (4)−0.020 (3)0.010 (3)−0.070 (3)
C130.0459 (17)0.0568 (18)0.0452 (17)0.0038 (14)0.0118 (15)0.0024 (13)
Cu1—O11.910 (2)C5—H50.93
Cu1—N11.953 (2)C6—H60.93
Cu1—N21.997 (3)C7—H7A0.96
Cu1—N31.998 (3)C7—H7B0.96
Cu1—N3i2.598 (4)C7—H7C0.96
S1—C131.616 (3)C8—H80.93
O1—C21.317 (3)C9—C101.509 (6)
O2—C41.359 (3)C9—H9A0.97
O2—C71.421 (4)C9—H9B0.97
N1—C81.294 (4)C10—C111.506 (6)
N1—C91.504 (5)C10—H10A0.97
N1—C9A1.540 (8)C10—H10B0.97
N2—C111.467 (6)C11—H11A0.97
N2—C121.505 (5)C11—H11B0.97
N2—C11A1.506 (9)C9A—C10A1.507 (8)
N2—H2A0.91C9A—H9AA0.97
N2—H2B0.90C9A—H9AB0.97
N3—C131.157 (4)C10A—C11A1.510 (8)
C1—C21.407 (4)C10A—H10C0.97
C1—C61.415 (4)C10A—H10D0.97
C1—C81.416 (4)C11A—H11C0.97
C2—C31.408 (4)C11A—H11D0.97
C3—C41.378 (4)C12—H12A0.96
C3—H30.93C12—H12B0.96
C4—C51.399 (4)C12—H12C0.96
C5—C61.350 (4)
O1—Cu1—N193.67 (10)H7A—C7—H7B109.5
O1—Cu1—N2171.12 (10)O2—C7—H7C109.5
N1—Cu1—N294.96 (12)H7A—C7—H7C109.5
O1—Cu1—N385.70 (10)H7B—C7—H7C109.5
N1—Cu1—N3169.45 (12)N1—C8—C1127.6 (3)
N2—Cu1—N386.20 (12)N1—C8—H8116.2
N3i—Cu1—N199.91 (15)C1—C8—H8116.2
N3i—Cu1—N287.06 (15)N1—C9—C10111.3 (5)
N3i—Cu1—N390.57 (15)N1—C9—H9A109.4
N3i—Cu1—O189.50 (15)C10—C9—H9A109.4
C2—O1—Cu1127.91 (18)N1—C9—H9B109.4
C4—O2—C7119.1 (2)C10—C9—H9B109.4
C8—N1—C9112.2 (3)H9A—C9—H9B108.0
C8—N1—C9A117.1 (5)C11—C10—C9114.7 (6)
C8—N1—Cu1123.2 (2)C11—C10—H10A108.6
C9—N1—Cu1122.4 (3)C9—C10—H10A108.6
C9A—N1—Cu1116.0 (5)C11—C10—H10B108.6
C11—N2—C12105.7 (5)C9—C10—H10B108.6
C12—N2—C11A126.4 (7)H10A—C10—H10B107.6
C11—N2—Cu1122.0 (4)N2—C11—C10111.2 (5)
C12—N2—Cu1112.0 (3)N2—C11—H11A109.4
C11A—N2—Cu1107.2 (7)C10—C11—H11A109.4
C11—N2—H2A105.3N2—C11—H11B109.4
C12—N2—H2A105.3C10—C11—H11B109.4
C11A—N2—H2A97.8H11A—C11—H11B108.0
Cu1—N2—H2A105.3C10A—C9A—N1105.7 (11)
C11—N2—H2B110.6C10A—C9A—H9AA110.6
C12—N2—H2B102.4N1—C9A—H9AA110.6
C11A—N2—H2B103.1C10A—C9A—H9AB110.6
Cu1—N2—H2B102.5N1—C9A—H9AB110.6
C13—N3—Cu1154.3 (3)H9AA—C9A—H9AB108.7
C2—C1—C6118.3 (3)C9A—C10A—C11A113.5 (12)
C2—C1—C8124.0 (3)C9A—C10A—H10C108.9
C6—C1—C8117.7 (3)C11A—C10A—H10C108.9
O1—C2—C1122.6 (3)C9A—C10A—H10D108.9
O1—C2—C3118.0 (3)C11A—C10A—H10D108.9
C1—C2—C3119.3 (3)H10C—C10A—H10D107.7
C4—C3—C2120.1 (3)N2—C11A—C10A121.4 (11)
C4—C3—H3120.0N2—C11A—H11C107.0
C2—C3—H3120.0C10A—C11A—H11C107.0
O2—C4—C3124.5 (3)N2—C11A—H11D107.0
O2—C4—C5114.7 (2)C10A—C11A—H11D107.0
C3—C4—C5120.8 (3)H11C—C11A—H11D106.7
C6—C5—C4119.4 (3)N2—C12—H12A109.5
C6—C5—H5120.3N2—C12—H12B109.5
C4—C5—H5120.3H12A—C12—H12B109.5
C5—C6—C1122.1 (3)N2—C12—H12C109.5
C5—C6—H6118.9H12A—C12—H12C109.5
C1—C6—H6118.9H12B—C12—H12C109.5
O2—C7—H7A109.5N3—C13—S1178.1 (3)
O2—C7—H7B109.5
N1—Cu1—O1—C210.5 (3)C7—O2—C4—C5179.3 (3)
N3—Cu1—O1—C2−159.0 (3)C2—C3—C4—O2−179.5 (3)
O1—Cu1—N1—C8−8.2 (3)C2—C3—C4—C50.0 (4)
N2—Cu1—N1—C8173.9 (3)O2—C4—C5—C6178.6 (3)
N3—Cu1—N1—C878.0 (7)C3—C4—C5—C6−0.9 (4)
O1—Cu1—N1—C9153.7 (4)C4—C5—C6—C11.0 (5)
N2—Cu1—N1—C9−24.2 (4)C2—C1—C6—C5−0.2 (4)
N3—Cu1—N1—C9−120.1 (6)C8—C1—C6—C5−177.8 (3)
O1—Cu1—N1—C9A−165.8 (6)C9—N1—C8—C1−160.8 (4)
N2—Cu1—N1—C9A16.3 (6)C9A—N1—C8—C1160.1 (7)
N3—Cu1—N1—C9A−79.5 (8)Cu1—N1—C8—C12.8 (5)
N1—Cu1—N2—C1125.6 (5)C2—C1—C8—N14.5 (5)
N3—Cu1—N2—C11−164.9 (5)C6—C1—C8—N1−178.0 (3)
N1—Cu1—N2—C12−101.1 (3)C8—N1—C9—C10−150.3 (5)
N3—Cu1—N2—C1268.4 (3)C9A—N1—C9—C10−44.3 (8)
N1—Cu1—N2—C11A41.7 (6)Cu1—N1—C9—C1046.0 (7)
N3—Cu1—N2—C11A−148.9 (6)N1—C9—C10—C11−68.3 (9)
O1—Cu1—N3—C13123.7 (6)C12—N2—C11—C1081.1 (7)
N1—Cu1—N3—C1336.7 (10)C11A—N2—C11—C10−97 (2)
N2—Cu1—N3—C13−60.0 (6)Cu1—N2—C11—C10−48.3 (8)
Cu1—O1—C2—C1−6.7 (4)C9—C10—C11—N269.8 (9)
Cu1—O1—C2—C3174.05 (19)C8—N1—C9A—C10A132.2 (9)
C6—C1—C2—O1−180.0 (2)C9—N1—C9A—C10A41.3 (8)
C8—C1—C2—O1−2.5 (4)Cu1—N1—C9A—C10A−68.8 (12)
C6—C1—C2—C3−0.8 (4)N1—C9A—C10A—C11A60.8 (18)
C8—C1—C2—C3176.7 (3)C11—N2—C11A—C10A78 (2)
O1—C2—C3—C4−179.9 (2)C12—N2—C11A—C10A75.1 (16)
C1—C2—C3—C40.9 (4)Cu1—N2—C11A—C10A−60.6 (15)
C7—O2—C4—C3−1.2 (4)C9A—C10A—C11A—N27(2)
D—H···AD—HH···AD···AD—H···A
N2—H2A···O1i0.912.142.999 (3)157
Table 1

Selected bond lengths (Å)

Cu1—O11.910 (2)
Cu1—N11.953 (2)
Cu1—N21.997 (3)
Cu1—N31.998 (3)
Cu1—N3i2.598 (4)

Symmetry code: (i) .

Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2A⋯O1i0.912.142.999 (3)157

Symmetry code: (i) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  catena-Poly[[[2,4-dichloro-6-(pyridin-2-ylmethyliminomethyl)phenolato]copper(II)]-mu-thiocyanato].

Authors:  Zhong-Lu You; Hai-Liang Zhu
Journal:  Acta Crystallogr C       Date:  2005-08-20       Impact factor: 1.172

3.  [N,N'-Bis(5-bromosalicylidene)-1,3-diaminopropane]nickel(II) and [N, N'-bis(5-chlorosalicylidene)-1,3-diaminopropane]copper(II).

Authors:  A Elmali; C T Zeyrek; Y Elerman; I Svoboda
Journal:  Acta Crystallogr C       Date:  2000-11       Impact factor: 1.172

4.  Bis{2-meth-oxy-6-[(3-methoxy-prop-yl)imino-meth-yl]phenolato-κN,O}copper(II).

Authors:  Amitabha Datta; Jui-Hsien Huang; Hon Man Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-11-08
  4 in total
  1 in total

1.  Bromido{N-methyl-N'-[1-(2-pyrid-yl)ethyl-idene]ethane-1,2-diamine-κN,N',N''}-(thio-cyanato-κN)-copper(II).

Authors:  Li-Jun Liu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-07-17
  1 in total

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