Literature DB >> 21578789

Cytosinium-hydrogen maleate-cytosine (1/1/1).

Nourredine Benali-Cherif, Wahiba Falek, Amani Direm.   

Abstract

The title organic salt, C(4)H(6)N(3)O(+)·C(4)H(3)O(4) (-)·C(4)H(5)N(3)O, was synthesized from cytosine base and maleic acid. An intra-molecular O-H⋯O hydrogen bond occurs in the hydrogen maleate anion. The crystal packing is stabilized by inter-molecular N-H⋯O, N-H⋯N and C-H⋯O hydrogen bonds, giving rise to a nearly planar two-dimensional network parallel to (101).

Entities:  

Year:  2009        PMID: 21578789      PMCID: PMC2972138          DOI: 10.1107/S1600536809046571

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to cytosine, see: Devlin (1986 ▶); Johnson & Coghill (1925 ▶); Mahan et al. (2004 ▶). For the structure of cytosine, see: Barker & Marsh (1964 ▶) and for that of cytosine monohydrate, see: Jeffrey & Kinoshita (1963 ▶); Swamy et al. (2001 ▶). For the stuctures of inorganic cytosinium salts, see: Mandel (1977 ▶); Cherouana et al. (2003 ▶); Jaskólski (1989 ▶); Bagieu-Beucher (1990 ▶) and for those of cytosinium salts of organic acids, see: Gdaniec et al. (1989 ▶); Smith et al. (2005 ▶); Balasubramanian et al. (1996 ▶). For the hydrogen maleate anion, see: Madsen & Larsen (1998 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C4H6N3O+·C4H3O4 −·C4H5N3O M = 338.29 Monoclinic, a = 27.3226 (5) Å b = 7.3618 (2) Å c = 14.6742 (4) Å β = 93.905 (1)° V = 2944.77 (13) Å3 Z = 8 Mo Kα radiation μ = 0.13 mm−1 T = 298 K 0.3 × 0.15 × 0.1 mm

Data collection

Nonius KappaCCD diffractometer Absorption correction: none 3490 measured reflections 3485 independent reflections 2603 reflections with I > 2σ(I) R int = 0.043

Refinement

R[F 2 > 2σ(F 2)] = 0.048 wR(F 2) = 0.136 S = 1.07 3485 reflections 202 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.36 e Å−3 Δρmin = −0.23 e Å−3 Data collection: KappaCCD Server Software (Nonius, 1998 ▶); cell refinement: DENZO and SCALEPACK (Otwinowski & Minor, 1997 ▶); data reduction: DENZO and SCALEPACK; program(s) used to solve structure: SIR2004 (Burla et al., 2005 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809046571/dn2509sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809046571/dn2509Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C4H6N3O+·C4H3O4·C4H5N3OF(000) = 1408
Mr = 338.29Dx = 1.526 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
a = 27.3226 (5) ÅCell parameters from 3490 reflections
b = 7.3618 (2) Åθ = 2.8–28.0°
c = 14.6742 (4) ŵ = 0.13 mm1
β = 93.905 (1)°T = 298 K
V = 2944.77 (13) Å3Prism, colourless
Z = 80.3 × 0.15 × 0.1 mm
Nonius KappaCCD diffractometer2603 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.043
graphiteθmax = 28.0°, θmin = 2.8°
ω–θ scansh = 0→35
3490 measured reflectionsk = 0→9
3485 independent reflectionsl = −19→19
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.048Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.136H atoms treated by a mixture of independent and constrained refinement
S = 1.07w = 1/[σ2(Fo2) + (0.0596P)2 + 1.9669P] where P = (Fo2 + 2Fc2)/3
3485 reflections(Δ/σ)max < 0.001
202 parametersΔρmax = 0.36 e Å3
0 restraintsΔρmin = −0.23 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O7B0.33929 (4)1.06422 (15)0.29275 (9)0.0427 (3)
N1B0.40074 (5)0.90020 (18)0.23748 (9)0.0387 (3)
H1B0.41470.99760.21990.046*
N3B0.33603 (5)0.75680 (17)0.30317 (10)0.0356 (3)
H3B0.30850.76160.32810.043*
N8B0.33306 (6)0.44790 (19)0.31458 (11)0.0497 (4)
H8B10.30550.45910.33900.060*
H8B20.34520.34170.30670.060*
C2B0.35779 (6)0.9147 (2)0.27857 (11)0.0345 (3)
C4B0.35667 (6)0.5930 (2)0.28930 (11)0.0377 (4)
C5B0.40201 (6)0.5833 (2)0.24822 (12)0.0428 (4)
H5B0.41710.47220.23900.051*
C6B0.42225 (6)0.7386 (2)0.22325 (12)0.0429 (4)
H6B0.45180.73560.19540.052*
O7A0.23768 (4)0.47389 (15)0.38025 (9)0.0467 (3)
N1A0.17582 (5)0.63603 (19)0.43517 (10)0.0406 (3)
H1A0.16050.53780.44740.049*
N3A0.24320 (5)0.78198 (17)0.37790 (10)0.0366 (3)
N8A0.24807 (6)1.09115 (19)0.37624 (12)0.0508 (4)
H8A10.27571.08100.35190.061*
H8A20.23651.19700.38730.061*
C2A0.21960 (6)0.6237 (2)0.39693 (11)0.0355 (3)
C4A0.22347 (6)0.9448 (2)0.39665 (12)0.0378 (4)
C5A0.17782 (6)0.9546 (2)0.43695 (13)0.0429 (4)
H5A0.16401.06590.45060.051*
C6A0.15542 (6)0.7983 (2)0.45467 (13)0.0433 (4)
H6A0.12540.80080.48080.052*
O10.00023 (4)0.51357 (17)0.62970 (9)0.0448 (3)
O2−0.05080 (5)0.30095 (18)0.67256 (10)0.0541 (4)
O30.07419 (4)0.53110 (16)0.54870 (8)0.0419 (3)
H30.0374 (7)0.532 (3)0.5856 (13)0.063*
O40.12212 (5)0.33885 (18)0.48081 (9)0.054
C10.08607 (6)0.3706 (2)0.52447 (11)0.038
C20.05603 (7)0.2114 (2)0.54876 (14)0.049
H10.06760.10010.52930.059*
C30.01551 (7)0.2018 (2)0.59356 (14)0.0504 (5)
H20.00330.08500.60030.061*
C4−0.01358 (6)0.3478 (2)0.63484 (12)0.0402 (4)
U11U22U33U12U13U23
O7B0.0443 (6)0.0235 (6)0.0615 (8)0.0016 (4)0.0113 (5)−0.0015 (5)
N1B0.0405 (7)0.0322 (7)0.0444 (8)−0.0021 (5)0.0104 (6)−0.0013 (6)
N3B0.0351 (7)0.0245 (6)0.0479 (8)0.0008 (5)0.0077 (6)−0.0014 (5)
N8B0.0544 (9)0.0260 (7)0.0704 (10)0.0031 (6)0.0172 (8)0.0006 (7)
C2B0.0369 (8)0.0278 (8)0.0385 (8)0.0007 (6)0.0013 (6)−0.0017 (6)
C4B0.0442 (9)0.0267 (8)0.0419 (9)0.0022 (6)0.0008 (7)−0.0022 (6)
C5B0.0440 (9)0.0352 (9)0.0500 (10)0.0104 (7)0.0084 (8)−0.0028 (7)
C6B0.0408 (9)0.0430 (10)0.0461 (9)0.0061 (7)0.0104 (7)−0.0036 (7)
O7A0.0452 (7)0.0239 (6)0.0724 (8)0.0005 (5)0.0135 (6)−0.0010 (6)
N1A0.0380 (7)0.0313 (7)0.0533 (8)−0.0045 (6)0.0099 (6)−0.0021 (6)
N3A0.0374 (7)0.0215 (6)0.0514 (8)0.0010 (5)0.0061 (6)0.0001 (6)
N8A0.0503 (8)0.0243 (7)0.0793 (11)0.0016 (6)0.0165 (8)−0.0002 (7)
C2A0.0361 (8)0.0259 (8)0.0446 (9)0.0003 (6)0.0029 (7)−0.0001 (6)
C4A0.0392 (8)0.0277 (8)0.0465 (9)0.0027 (6)0.0016 (7)−0.0014 (7)
C5A0.0415 (9)0.0325 (8)0.0550 (10)0.0077 (7)0.0059 (7)−0.0060 (7)
C6A0.0362 (8)0.0433 (10)0.0510 (10)0.0031 (7)0.0082 (7)−0.0062 (8)
O10.0403 (6)0.0392 (7)0.0566 (7)−0.0014 (5)0.0154 (5)−0.0037 (6)
O20.0455 (7)0.0501 (8)0.0694 (9)−0.0055 (6)0.0239 (6)0.0023 (7)
O30.0418 (6)0.0349 (6)0.0506 (7)−0.0033 (5)0.0137 (5)−0.0028 (5)
O40.0520.0460.0670.0000.030−0.006
C10.0370.0380.040−0.0010.0070.000
C20.0530.0310.0670.0020.020−0.002
C30.0526 (10)0.0309 (9)0.0696 (12)−0.0038 (7)0.0179 (9)0.0020 (8)
C40.0367 (8)0.0401 (9)0.0443 (9)−0.0023 (7)0.0067 (7)0.0016 (7)
O7B—C2B1.2348 (19)N3A—C2A1.3697 (19)
N1B—C6B1.350 (2)N8A—C4A1.315 (2)
N1B—C2B1.360 (2)N8A—H8A10.8600
N1B—H1B0.8600N8A—H8A20.8600
N3B—C4B1.353 (2)C4A—C5A1.418 (2)
N3B—C2B1.365 (2)C5A—C6A1.337 (2)
N3B—H3B0.8600C5A—H5A0.9300
N8B—C4B1.314 (2)C6A—H6A0.9300
N8B—H8B10.8600O1—C41.281 (2)
N8B—H8B20.8600O1—H31.25 (2)
C4B—C5B1.416 (2)O2—C41.239 (2)
C5B—C6B1.332 (2)O3—C11.282 (2)
C5B—H5B0.9300O3—H31.17 (2)
C6B—H6B0.9300O4—C11.2333 (19)
O7A—C2A1.2398 (19)C1—C21.488 (2)
N1A—C6A1.357 (2)C2—C31.327 (3)
N1A—C2A1.358 (2)C2—H10.9300
N1A—H1A0.8600C3—C41.490 (3)
N3A—C4A1.3503 (19)C3—H20.9300
C6B—N1B—C2B122.40 (14)H8A1—N8A—H8A2120.0
C6B—N1B—H1B118.8O7A—C2A—N1A121.00 (14)
C2B—N1B—H1B118.8O7A—C2A—N3A121.13 (14)
C4B—N3B—C2B121.71 (13)N1A—C2A—N3A117.87 (13)
C4B—N3B—H3B119.1N8A—C4A—N3A117.61 (15)
C2B—N3B—H3B119.1N8A—C4A—C5A122.06 (15)
C4B—N8B—H8B1120.0N3A—C4A—C5A120.33 (15)
C4B—N8B—H8B2120.0C6A—C5A—C4A117.66 (15)
H8B1—N8B—H8B2120.0C6A—C5A—H5A121.2
O7B—C2B—N1B121.34 (14)C4A—C5A—H5A121.2
O7B—C2B—N3B121.59 (14)C5A—C6A—N1A121.10 (15)
N1B—C2B—N3B117.07 (13)C5A—C6A—H6A119.4
N8B—C4B—N3B117.68 (15)N1A—C6A—H6A119.4
N8B—C4B—C5B122.64 (15)C4—O1—H3112.6 (11)
N3B—C4B—C5B119.67 (15)C1—O3—H3111.8 (12)
C6B—C5B—C4B117.72 (15)O4—C1—O3123.04 (15)
C6B—C5B—H5B121.1O4—C1—C2116.62 (16)
C4B—C5B—H5B121.1O3—C1—C2120.34 (14)
C5B—C6B—N1B121.38 (15)C3—C2—C1130.78 (17)
C5B—C6B—H6B119.3C3—C2—H1114.6
N1B—C6B—H6B119.3C1—C2—H1114.6
C6A—N1A—C2A122.13 (14)C2—C3—C4130.43 (16)
C6A—N1A—H1A118.9C2—C3—H2114.8
C2A—N1A—H1A118.9C4—C3—H2114.8
C4A—N3A—C2A120.90 (13)O2—C4—O1123.04 (16)
C4A—N8A—H8A1120.0O2—C4—C3117.21 (16)
C4A—N8A—H8A2120.0O1—C4—C3119.74 (14)
D—H···AD—HH···AD···AD—H···A
N1A—H1A···O40.861.892.7426 (19)174
N1B—H1B···O2i0.861.912.7701 (19)174
N8A—H8A1···O7B0.862.002.8582 (19)178
N8A—H8A2···O7Aii0.862.042.8329 (19)153
N3B—H3B···N3A0.861.982.8370 (19)176
N8B—H8B1···O7A0.861.992.8458 (19)173
N8B—H8B2···O7Biii0.862.062.8491 (18)153
O3—H3···O11.17 (2)1.25 (2)2.4167 (16)173 (2)
C6B—H6B···O1i0.932.503.186 (2)131
C5B—H5B···O2iv0.932.423.330 (2)165
C5A—H5A···O4ii0.932.373.296 (2)175
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1A—H1A⋯O40.861.892.7426 (19)174
N1B—H1B⋯O2i 0.861.912.7701 (19)174
N8A—H8A1⋯O7B 0.862.002.8582 (19)178
N8A—H8A2⋯O7A ii 0.862.042.8329 (19)153
N3B—H3B⋯N3A 0.861.982.8370 (19)176
N8B—H8B1⋯O7A 0.861.992.8458 (19)173
N8B—H8B2⋯O7B iii 0.862.062.8491 (18)153
O3—H3⋯O11.17 (2)1.25 (2)2.4167 (16)173 (2)
C6B—H6B⋯O1i 0.932.503.186 (2)131
C5B—H5B⋯O2iv 0.932.423.330 (2)165
C5A—H5A⋯O4ii 0.932.373.296 (2)175

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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