| Literature DB >> 21578789 |
Nourredine Benali-Cherif, Wahiba Falek, Amani Direm.
Abstract
The title organic salt, C(4)H(6)N(3)O(+)·C(4)H(3)O(4) (-)·C(4)H(5)N(3)O, was synthesized from cytosine base and maleic acid. An intra-molecular O-H⋯O hydrogen bond occurs in the hydrogen maleate anion. The crystal packing is stabilized by inter-molecular N-H⋯O, N-H⋯N and C-H⋯O hydrogen bonds, giving rise to a nearly planar two-dimensional network parallel to (101).Entities:
Year: 2009 PMID: 21578789 PMCID: PMC2972138 DOI: 10.1107/S1600536809046571
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C4H6N3O+·C4H3O4−·C4H5N3O | |
| Monoclinic, | Mo |
| Cell parameters from 3490 reflections | |
| θ = 2.8–28.0° | |
| µ = 0.13 mm−1 | |
| β = 93.905 (1)° | |
| Prism, colourless | |
| 0.3 × 0.15 × 0.1 mm |
| Nonius KappaCCD diffractometer | 2603 reflections with |
| Radiation source: fine-focus sealed tube | |
| graphite | θmax = 28.0°, θmin = 2.8° |
| ω–θ scans | |
| 3490 measured reflections | |
| 3485 independent reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 3485 reflections | (Δ/σ)max < 0.001 |
| 202 parameters | Δρmax = 0.36 e Å−3 |
| 0 restraints | Δρmin = −0.23 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of |
| O7B | 0.33929 (4) | 1.06422 (15) | 0.29275 (9) | 0.0427 (3) | |
| N1B | 0.40074 (5) | 0.90020 (18) | 0.23748 (9) | 0.0387 (3) | |
| H1B | 0.4147 | 0.9976 | 0.2199 | 0.046* | |
| N3B | 0.33603 (5) | 0.75680 (17) | 0.30317 (10) | 0.0356 (3) | |
| H3B | 0.3085 | 0.7616 | 0.3281 | 0.043* | |
| N8B | 0.33306 (6) | 0.44790 (19) | 0.31458 (11) | 0.0497 (4) | |
| H8B1 | 0.3055 | 0.4591 | 0.3390 | 0.060* | |
| H8B2 | 0.3452 | 0.3417 | 0.3067 | 0.060* | |
| C2B | 0.35779 (6) | 0.9147 (2) | 0.27857 (11) | 0.0345 (3) | |
| C4B | 0.35667 (6) | 0.5930 (2) | 0.28930 (11) | 0.0377 (4) | |
| C5B | 0.40201 (6) | 0.5833 (2) | 0.24822 (12) | 0.0428 (4) | |
| H5B | 0.4171 | 0.4722 | 0.2390 | 0.051* | |
| C6B | 0.42225 (6) | 0.7386 (2) | 0.22325 (12) | 0.0429 (4) | |
| H6B | 0.4518 | 0.7356 | 0.1954 | 0.052* | |
| O7A | 0.23768 (4) | 0.47389 (15) | 0.38025 (9) | 0.0467 (3) | |
| N1A | 0.17582 (5) | 0.63603 (19) | 0.43517 (10) | 0.0406 (3) | |
| H1A | 0.1605 | 0.5378 | 0.4474 | 0.049* | |
| N3A | 0.24320 (5) | 0.78198 (17) | 0.37790 (10) | 0.0366 (3) | |
| N8A | 0.24807 (6) | 1.09115 (19) | 0.37624 (12) | 0.0508 (4) | |
| H8A1 | 0.2757 | 1.0810 | 0.3519 | 0.061* | |
| H8A2 | 0.2365 | 1.1970 | 0.3873 | 0.061* | |
| C2A | 0.21960 (6) | 0.6237 (2) | 0.39693 (11) | 0.0355 (3) | |
| C4A | 0.22347 (6) | 0.9448 (2) | 0.39665 (12) | 0.0378 (4) | |
| C5A | 0.17782 (6) | 0.9546 (2) | 0.43695 (13) | 0.0429 (4) | |
| H5A | 0.1640 | 1.0659 | 0.4506 | 0.051* | |
| C6A | 0.15542 (6) | 0.7983 (2) | 0.45467 (13) | 0.0433 (4) | |
| H6A | 0.1254 | 0.8008 | 0.4808 | 0.052* | |
| O1 | 0.00023 (4) | 0.51357 (17) | 0.62970 (9) | 0.0448 (3) | |
| O2 | −0.05080 (5) | 0.30095 (18) | 0.67256 (10) | 0.0541 (4) | |
| O3 | 0.07419 (4) | 0.53110 (16) | 0.54870 (8) | 0.0419 (3) | |
| H3 | 0.0374 (7) | 0.532 (3) | 0.5856 (13) | 0.063* | |
| O4 | 0.12212 (5) | 0.33885 (18) | 0.48081 (9) | 0.054 | |
| C1 | 0.08607 (6) | 0.3706 (2) | 0.52447 (11) | 0.038 | |
| C2 | 0.05603 (7) | 0.2114 (2) | 0.54876 (14) | 0.049 | |
| H1 | 0.0676 | 0.1001 | 0.5293 | 0.059* | |
| C3 | 0.01551 (7) | 0.2018 (2) | 0.59356 (14) | 0.0504 (5) | |
| H2 | 0.0033 | 0.0850 | 0.6003 | 0.061* | |
| C4 | −0.01358 (6) | 0.3478 (2) | 0.63484 (12) | 0.0402 (4) |
| O7B | 0.0443 (6) | 0.0235 (6) | 0.0615 (8) | 0.0016 (4) | 0.0113 (5) | −0.0015 (5) |
| N1B | 0.0405 (7) | 0.0322 (7) | 0.0444 (8) | −0.0021 (5) | 0.0104 (6) | −0.0013 (6) |
| N3B | 0.0351 (7) | 0.0245 (6) | 0.0479 (8) | 0.0008 (5) | 0.0077 (6) | −0.0014 (5) |
| N8B | 0.0544 (9) | 0.0260 (7) | 0.0704 (10) | 0.0031 (6) | 0.0172 (8) | 0.0006 (7) |
| C2B | 0.0369 (8) | 0.0278 (8) | 0.0385 (8) | 0.0007 (6) | 0.0013 (6) | −0.0017 (6) |
| C4B | 0.0442 (9) | 0.0267 (8) | 0.0419 (9) | 0.0022 (6) | 0.0008 (7) | −0.0022 (6) |
| C5B | 0.0440 (9) | 0.0352 (9) | 0.0500 (10) | 0.0104 (7) | 0.0084 (8) | −0.0028 (7) |
| C6B | 0.0408 (9) | 0.0430 (10) | 0.0461 (9) | 0.0061 (7) | 0.0104 (7) | −0.0036 (7) |
| O7A | 0.0452 (7) | 0.0239 (6) | 0.0724 (8) | 0.0005 (5) | 0.0135 (6) | −0.0010 (6) |
| N1A | 0.0380 (7) | 0.0313 (7) | 0.0533 (8) | −0.0045 (6) | 0.0099 (6) | −0.0021 (6) |
| N3A | 0.0374 (7) | 0.0215 (6) | 0.0514 (8) | 0.0010 (5) | 0.0061 (6) | 0.0001 (6) |
| N8A | 0.0503 (8) | 0.0243 (7) | 0.0793 (11) | 0.0016 (6) | 0.0165 (8) | −0.0002 (7) |
| C2A | 0.0361 (8) | 0.0259 (8) | 0.0446 (9) | 0.0003 (6) | 0.0029 (7) | −0.0001 (6) |
| C4A | 0.0392 (8) | 0.0277 (8) | 0.0465 (9) | 0.0027 (6) | 0.0016 (7) | −0.0014 (7) |
| C5A | 0.0415 (9) | 0.0325 (8) | 0.0550 (10) | 0.0077 (7) | 0.0059 (7) | −0.0060 (7) |
| C6A | 0.0362 (8) | 0.0433 (10) | 0.0510 (10) | 0.0031 (7) | 0.0082 (7) | −0.0062 (8) |
| O1 | 0.0403 (6) | 0.0392 (7) | 0.0566 (7) | −0.0014 (5) | 0.0154 (5) | −0.0037 (6) |
| O2 | 0.0455 (7) | 0.0501 (8) | 0.0694 (9) | −0.0055 (6) | 0.0239 (6) | 0.0023 (7) |
| O3 | 0.0418 (6) | 0.0349 (6) | 0.0506 (7) | −0.0033 (5) | 0.0137 (5) | −0.0028 (5) |
| O4 | 0.052 | 0.046 | 0.067 | 0.000 | 0.030 | −0.006 |
| C1 | 0.037 | 0.038 | 0.040 | −0.001 | 0.007 | 0.000 |
| C2 | 0.053 | 0.031 | 0.067 | 0.002 | 0.020 | −0.002 |
| C3 | 0.0526 (10) | 0.0309 (9) | 0.0696 (12) | −0.0038 (7) | 0.0179 (9) | 0.0020 (8) |
| C4 | 0.0367 (8) | 0.0401 (9) | 0.0443 (9) | −0.0023 (7) | 0.0067 (7) | 0.0016 (7) |
| O7B—C2B | 1.2348 (19) | N3A—C2A | 1.3697 (19) |
| N1B—C6B | 1.350 (2) | N8A—C4A | 1.315 (2) |
| N1B—C2B | 1.360 (2) | N8A—H8A1 | 0.8600 |
| N1B—H1B | 0.8600 | N8A—H8A2 | 0.8600 |
| N3B—C4B | 1.353 (2) | C4A—C5A | 1.418 (2) |
| N3B—C2B | 1.365 (2) | C5A—C6A | 1.337 (2) |
| N3B—H3B | 0.8600 | C5A—H5A | 0.9300 |
| N8B—C4B | 1.314 (2) | C6A—H6A | 0.9300 |
| N8B—H8B1 | 0.8600 | O1—C4 | 1.281 (2) |
| N8B—H8B2 | 0.8600 | O1—H3 | 1.25 (2) |
| C4B—C5B | 1.416 (2) | O2—C4 | 1.239 (2) |
| C5B—C6B | 1.332 (2) | O3—C1 | 1.282 (2) |
| C5B—H5B | 0.9300 | O3—H3 | 1.17 (2) |
| C6B—H6B | 0.9300 | O4—C1 | 1.2333 (19) |
| O7A—C2A | 1.2398 (19) | C1—C2 | 1.488 (2) |
| N1A—C6A | 1.357 (2) | C2—C3 | 1.327 (3) |
| N1A—C2A | 1.358 (2) | C2—H1 | 0.9300 |
| N1A—H1A | 0.8600 | C3—C4 | 1.490 (3) |
| N3A—C4A | 1.3503 (19) | C3—H2 | 0.9300 |
| C6B—N1B—C2B | 122.40 (14) | H8A1—N8A—H8A2 | 120.0 |
| C6B—N1B—H1B | 118.8 | O7A—C2A—N1A | 121.00 (14) |
| C2B—N1B—H1B | 118.8 | O7A—C2A—N3A | 121.13 (14) |
| C4B—N3B—C2B | 121.71 (13) | N1A—C2A—N3A | 117.87 (13) |
| C4B—N3B—H3B | 119.1 | N8A—C4A—N3A | 117.61 (15) |
| C2B—N3B—H3B | 119.1 | N8A—C4A—C5A | 122.06 (15) |
| C4B—N8B—H8B1 | 120.0 | N3A—C4A—C5A | 120.33 (15) |
| C4B—N8B—H8B2 | 120.0 | C6A—C5A—C4A | 117.66 (15) |
| H8B1—N8B—H8B2 | 120.0 | C6A—C5A—H5A | 121.2 |
| O7B—C2B—N1B | 121.34 (14) | C4A—C5A—H5A | 121.2 |
| O7B—C2B—N3B | 121.59 (14) | C5A—C6A—N1A | 121.10 (15) |
| N1B—C2B—N3B | 117.07 (13) | C5A—C6A—H6A | 119.4 |
| N8B—C4B—N3B | 117.68 (15) | N1A—C6A—H6A | 119.4 |
| N8B—C4B—C5B | 122.64 (15) | C4—O1—H3 | 112.6 (11) |
| N3B—C4B—C5B | 119.67 (15) | C1—O3—H3 | 111.8 (12) |
| C6B—C5B—C4B | 117.72 (15) | O4—C1—O3 | 123.04 (15) |
| C6B—C5B—H5B | 121.1 | O4—C1—C2 | 116.62 (16) |
| C4B—C5B—H5B | 121.1 | O3—C1—C2 | 120.34 (14) |
| C5B—C6B—N1B | 121.38 (15) | C3—C2—C1 | 130.78 (17) |
| C5B—C6B—H6B | 119.3 | C3—C2—H1 | 114.6 |
| N1B—C6B—H6B | 119.3 | C1—C2—H1 | 114.6 |
| C6A—N1A—C2A | 122.13 (14) | C2—C3—C4 | 130.43 (16) |
| C6A—N1A—H1A | 118.9 | C2—C3—H2 | 114.8 |
| C2A—N1A—H1A | 118.9 | C4—C3—H2 | 114.8 |
| C4A—N3A—C2A | 120.90 (13) | O2—C4—O1 | 123.04 (16) |
| C4A—N8A—H8A1 | 120.0 | O2—C4—C3 | 117.21 (16) |
| C4A—N8A—H8A2 | 120.0 | O1—C4—C3 | 119.74 (14) |
| H··· | ||||
| N1A—H1A···O4 | 0.86 | 1.89 | 2.7426 (19) | 174 |
| N1B—H1B···O2i | 0.86 | 1.91 | 2.7701 (19) | 174 |
| N8A—H8A1···O7B | 0.86 | 2.00 | 2.8582 (19) | 178 |
| N8A—H8A2···O7Aii | 0.86 | 2.04 | 2.8329 (19) | 153 |
| N3B—H3B···N3A | 0.86 | 1.98 | 2.8370 (19) | 176 |
| N8B—H8B1···O7A | 0.86 | 1.99 | 2.8458 (19) | 173 |
| N8B—H8B2···O7Biii | 0.86 | 2.06 | 2.8491 (18) | 153 |
| O3—H3···O1 | 1.17 (2) | 1.25 (2) | 2.4167 (16) | 173 (2) |
| C6B—H6B···O1i | 0.93 | 2.50 | 3.186 (2) | 131 |
| C5B—H5B···O2iv | 0.93 | 2.42 | 3.330 (2) | 165 |
| C5A—H5A···O4ii | 0.93 | 2.37 | 3.296 (2) | 175 |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N1 | 0.86 | 1.89 | 2.7426 (19) | 174 |
| N1 | 0.86 | 1.91 | 2.7701 (19) | 174 |
| N8 | 0.86 | 2.00 | 2.8582 (19) | 178 |
| N8 | 0.86 | 2.04 | 2.8329 (19) | 153 |
| N3 | 0.86 | 1.98 | 2.8370 (19) | 176 |
| N8 | 0.86 | 1.99 | 2.8458 (19) | 173 |
| N8 | 0.86 | 2.06 | 2.8491 (18) | 153 |
| O3—H3⋯O1 | 1.17 (2) | 1.25 (2) | 2.4167 (16) | 173 (2) |
| C6 | 0.93 | 2.50 | 3.186 (2) | 131 |
| C5 | 0.93 | 2.42 | 3.330 (2) | 165 |
| C5 | 0.93 | 2.37 | 3.296 (2) | 175 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .