Literature DB >> 11741429

Very strong C-H...O, N-H...O, and O-H...O hydrogen bonds involving a cyclic phosphate.

K C Kumara Swamy1, S Kumaraswamy, P Kommana.   

Abstract

Very short C-H...O, N-H...O, and O-H...O hydrogen bonds have been generated utilizing the cyclic phosphate [CH2(6-t-Bu-4-Me-C6H2O)2]P(O)OH (1). X-ray structures of (i) 1 (unsolvated, two polymorphs), 1...EtOH, and 1...MeOH, (ii) [imidazolium](+)[CH2(6-t-Bu-4-Me-C6H2O)2PO2](-)...MeOH [2], (iii) [HNC5H4-N=N-C5H4NH](2+)[(CH2(6-t-Bu-4-Me-C6H2O)2PO2)2](2-)...4CH3CN...H2O [3], (v) [K, 18-crown-6](+)[(CH2(6-t-Bu-4-Me-C6H2O)2P(O)OH)(CH2(6-t-Bu-4-Me-C6H2O)2PO2)](-)...2THF [4], (vi) 1...cytosine...MeOH [5], (vii) 1...adenine...1/2MeOH [6], and (viii) 1...S-(-)-proline [7] have been determined. The phosphate 1 in both its forms is a hydrogen-bonded dimer with a short O-H...O distance of 2.481(2) [triclinic form] or 2.507(3) A [monoclinic form]. Compound 2 has a helical structure with a very short C-H...O hydrogen bond involving an imidazolyl C-H and methanol in addition to N-H...O hydrogen bonds. A helical motif is also seen in 5. In 3, an extremely short N-H...O hydrogen bond [N...O 2.558(4) A] is observed. Compounds 6 and 7 also exhibit short N-H...O hydrogen bonds. In 1...EtOH, a 12-membered hydrogen-bonded ring motif, with one of the shortest known O-H...O hydrogen bonds [O...O 2.368(4) A], is present. 1...MeOH is a similar dimer with a very short O(-H)...O bond [2.429(3) A]. In 4, the deprotonated phosphate (anion) and the parent acid are held together by a hydrogen bond on one side and a coordinate/covalent bond to potassium on the other; the O-H...O bond is symmetrical and very strong [O...O 2.397(3) A].

Entities:  

Mesh:

Substances:

Year:  2001        PMID: 11741429     DOI: 10.1021/ja010713x

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  6 in total

1.  X-ray structures of catalytic intermediates of cytochrome c oxidase provide insights into its O2 activation and unidirectional proton-pump mechanisms.

Authors:  Atsuhiro Shimada; Yuki Etoh; Rika Kitoh-Fujisawa; Ai Sasaki; Kyoko Shinzawa-Itoh; Takeshi Hiromoto; Eiki Yamashita; Kazumasa Muramoto; Tomitake Tsukihara; Shinya Yoshikawa
Journal:  J Biol Chem       Date:  2020-03-12       Impact factor: 5.157

2.  Polar molecules catalyze CO insertion into metal-alkyl bonds through the displacement of an agostic C-H bond.

Authors:  Tian Zhou; Santanu Malakar; Steven L Webb; Karsten Krogh-Jespersen; Alan S Goldman
Journal:  Proc Natl Acad Sci U S A       Date:  2019-02-12       Impact factor: 11.205

3.  Cytosinium-hydrogen maleate-cytosine (1/1/1).

Authors:  Nourredine Benali-Cherif; Wahiba Falek; Amani Direm
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-11-11

4.  Crystal structure of [bis-(2,6-diiso-propyl-phen-yl) phosphato-κO]tris-(methanol-κO)lithium methanol monosolvate.

Authors:  Mikhail E Minyaev; Ilya E Nifant'ev; Alexander N Tavtorkin; Sof'ya A Korchagina; Shadana Sh Zeynalova
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2015-04-02

5.  Myth or Truth: The Glass Forming Ability Class III Drugs Will Always Form Single-Phase Homogenous Amorphous Solid Dispersion Formulations.

Authors:  Piyush Panini; Massimiliano Rampazzo; Abhishek Singh; Filip Vanhoutte; Guy Van den Mooter
Journal:  Pharmaceutics       Date:  2019-10-14       Impact factor: 6.321

6.  Incommensurate Phase in Λ-cobalt (III) Sepulchrate Trinitrate Governed by Highly Competitive N-H⋅⋅⋅O and C-H⋅⋅⋅O Hydrogen Bond Networks.

Authors:  Somnath Dey; Andreas Schönleber; Sander van Smaalen; Wolfgang Morgenroth; Finn Krebs Larsen
Journal:  Chemistry       Date:  2022-02-10       Impact factor: 5.020

  6 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.