Literature DB >> 21578731

Cinnamyl 2-oxo-2H-chromene-3-carboxyl-ate.

Cui-Lian Xu, Nan Yang, Guo-Yu Yang, Su-Fang Fan, Cao-Yuan Niu.   

Abstract

The title compound, C(19)H(14)O(4), was prepared by the reaction of 2-oxo-2H-chromene-3-acyl chloride with cinnamic alcohol. The whole mol-ecule is not planar, the dihedral angle between the planes of coumarin and benzene rings being 13.94 (4)°, but the plane of the coumarin ring and that of the ester group are almost coplanar, making a dihedral angle of 2.9 (1)°. In the crystal structure, weak inter-molecular C-H⋯O hydrogen bonds link two mol-ecules into dimers, and π-π stacking inter-actions between inversion-related rings of the coumarin groups [centroid-centroid distance 3.8380 (15) Å with a slippage of 1.535 Å], which connect the dimers into columns extending along [010].

Entities:  

Year:  2009        PMID: 21578731      PMCID: PMC2972065          DOI: 10.1107/S1600536809045644

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the medicinal and biological activity of coumarins and their derivatives, see: Borges et al. (2005 ▶); Kontogiorgis & Hadjipavlou-Litina (2005 ▶); Gursoy & Karali (2003 ▶). For the development of coumarin derivatives as anti-HIV agents, see: Yu et al. (2003 ▶, 2007 ▶). For the structure of menthyl 2-oxo-2H-chromene-3-carboxyl­ate, see: Xu et al. (2009 ▶).

Experimental

Crystal data

C19H14O4 M = 306.30 Monoclinic, a = 5.7026 (11) Å b = 8.2969 (17) Å c = 31.693 (6) Å β = 92.96 (3)° V = 1497.5 (5) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 291 K 0.20 × 0.18 × 0.18 mm

Data collection

Rigaku R-AXIS-IV diffractometer Absorption correction: multi-scan (ABSCOR; Higashi, 1995 ▶) T min = 0.981, T max = 0.983 4266 measured reflections 2485 independent reflections 2002 reflections with I > 2σ(I) R int = 0.060

Refinement

R[F 2 > 2σ(F 2)] = 0.058 wR(F 2) = 0.147 S = 1.08 2485 reflections 209 parameters H-atom parameters constrained Δρmax = 0.24 e Å−3 Δρmin = −0.23 e Å−3 Data collection: R-AXIS (Rigaku, 1997 ▶); cell refinement: R-AXIS data reduction: R-AXIS; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶) and DIAMOND (Brandenburg, 2005 ▶); software used to prepare material for publication: TEXSAN (Molecular Structure Corporation & Rigaku, 2000 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809045644/si2212sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809045644/si2212Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C19H14O4F(000) = 640
Mr = 306.30Dx = 1.359 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 378 reflections
a = 5.7026 (11) Åθ = 1.3–25.0°
b = 8.2969 (17) ŵ = 0.10 mm1
c = 31.693 (6) ÅT = 291 K
β = 92.96 (3)°Block, colourless
V = 1497.5 (5) Å30.20 × 0.18 × 0.18 mm
Z = 4
Rigaku R-AXIS-IV diffractometer2485 independent reflections
Radiation source: fine-focus sealed tube2002 reflections with I > 2σ(I)
graphiteRint = 0.060
Detector resolution: 0 pixels mm-1θmax = 25.0°, θmin = 1.3°
Oscillation frames scansh = 0→6
Absorption correction: multi-scan (ABSCOR; Higashi, 1995)k = −9→9
Tmin = 0.981, Tmax = 0.983l = −37→37
4266 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.058H-atom parameters constrained
wR(F2) = 0.147w = 1/[σ2(Fo2) + (0.0708P)2 + 0.2535P] where P = (Fo2 + 2Fc2)/3
S = 1.08(Δ/σ)max < 0.001
2485 reflectionsΔρmax = 0.24 e Å3
209 parametersΔρmin = −0.22 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.044 (4)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O1−0.2090 (3)0.32886 (19)0.02988 (4)0.0567 (4)
O2−0.1217 (3)0.2749 (2)0.09679 (5)0.0696 (5)
O30.4778 (3)0.0109 (2)0.06191 (4)0.0638 (5)
O40.2725 (3)0.09462 (19)0.11589 (4)0.0534 (4)
C1−0.1652 (4)0.3240 (3)−0.01256 (6)0.0470 (5)
C2−0.3243 (4)0.4004 (3)−0.04038 (7)0.0621 (6)
H2A−0.45520.4528−0.03060.075*
C3−0.2838 (5)0.3967 (3)−0.08278 (7)0.0638 (7)
H3A−0.38860.4483−0.10180.077*
C4−0.0916 (4)0.3184 (3)−0.09790 (7)0.0623 (7)
H4A−0.06740.3179−0.12670.075*
C50.0644 (4)0.2410 (3)−0.07000 (6)0.0557 (6)
H5A0.19280.1867−0.08010.067*
C60.0297 (3)0.2440 (2)−0.02644 (6)0.0438 (5)
C70.1821 (4)0.1682 (3)0.00463 (6)0.0445 (5)
H7A0.31370.1139−0.00410.053*
C80.1425 (3)0.1722 (2)0.04622 (6)0.0421 (5)
C9−0.0628 (4)0.2578 (3)0.06115 (6)0.0493 (5)
C100.3154 (4)0.0854 (3)0.07502 (6)0.0451 (5)
C110.4328 (4)0.0061 (3)0.14417 (6)0.0581 (6)
H11A0.58290.06130.14680.070*
H11B0.4586−0.10090.13290.070*
C120.3306 (4)−0.0062 (3)0.18634 (6)0.0532 (6)
H12A0.4147−0.06670.20670.064*
C130.1334 (4)0.0596 (3)0.19788 (6)0.0483 (5)
H13A0.04790.11900.17750.058*
C140.0349 (4)0.0481 (2)0.24006 (6)0.0448 (5)
C15−0.1666 (4)0.1337 (3)0.24838 (7)0.0557 (6)
H15A−0.23590.19900.22740.067*
C16−0.2664 (4)0.1240 (3)0.28701 (7)0.0643 (7)
H16A−0.40150.18260.29180.077*
C17−0.1661 (4)0.0276 (3)0.31857 (7)0.0610 (7)
H17A−0.23500.01900.34440.073*
C180.0363 (5)−0.0556 (3)0.31136 (7)0.0592 (6)
H18A0.1065−0.11870.33270.071*
C190.1365 (4)−0.0463 (3)0.27266 (6)0.0530 (6)
H19A0.2733−0.10360.26820.064*
U11U22U33U12U13U23
O10.0587 (9)0.0672 (10)0.0450 (8)0.0205 (8)0.0100 (7)−0.0005 (7)
O20.0735 (11)0.0936 (13)0.0434 (8)0.0265 (10)0.0188 (8)−0.0040 (8)
O30.0654 (10)0.0836 (12)0.0431 (8)0.0282 (9)0.0102 (7)−0.0002 (8)
O40.0606 (9)0.0657 (10)0.0341 (7)0.0156 (8)0.0053 (6)−0.0006 (7)
C10.0493 (12)0.0461 (12)0.0459 (11)0.0017 (10)0.0064 (9)0.0010 (9)
C20.0594 (14)0.0684 (16)0.0585 (14)0.0179 (12)0.0030 (11)0.0045 (12)
C30.0639 (15)0.0732 (16)0.0535 (13)0.0069 (13)−0.0047 (11)0.0118 (12)
C40.0654 (15)0.0820 (18)0.0397 (12)−0.0056 (13)0.0043 (10)0.0094 (11)
C50.0543 (13)0.0722 (16)0.0412 (11)0.0038 (11)0.0089 (10)0.0023 (11)
C60.0452 (12)0.0473 (11)0.0394 (10)−0.0008 (9)0.0069 (9)0.0009 (9)
C70.0449 (11)0.0473 (12)0.0421 (11)0.0058 (9)0.0098 (8)−0.0009 (9)
C80.0484 (11)0.0415 (11)0.0370 (10)0.0023 (9)0.0078 (8)−0.0018 (8)
C90.0527 (13)0.0529 (13)0.0428 (11)0.0059 (10)0.0085 (9)−0.0026 (10)
C100.0494 (12)0.0493 (12)0.0374 (10)0.0022 (10)0.0092 (9)−0.0028 (9)
C110.0596 (14)0.0747 (15)0.0396 (11)0.0136 (12)−0.0006 (10)−0.0011 (11)
C120.0599 (14)0.0633 (14)0.0360 (10)0.0072 (11)−0.0022 (9)0.0020 (10)
C130.0534 (13)0.0513 (12)0.0398 (10)0.0007 (10)−0.0027 (9)0.0028 (9)
C140.0460 (12)0.0469 (11)0.0412 (10)−0.0055 (9)−0.0008 (9)−0.0016 (9)
C150.0502 (12)0.0658 (14)0.0505 (12)0.0030 (11)−0.0015 (10)0.0049 (11)
C160.0529 (14)0.0815 (18)0.0593 (14)0.0091 (13)0.0096 (11)−0.0045 (13)
C170.0665 (15)0.0762 (17)0.0413 (12)−0.0027 (13)0.0130 (10)−0.0016 (11)
C180.0770 (16)0.0593 (14)0.0410 (11)0.0070 (13)0.0004 (10)0.0015 (10)
C190.0620 (14)0.0541 (13)0.0429 (11)0.0086 (11)0.0017 (10)0.0006 (10)
O1—C11.381 (2)C8—C101.494 (3)
O1—C91.393 (3)C11—C121.489 (3)
O2—C91.203 (2)C11—H11A0.9700
O3—C101.205 (2)C11—H11B0.9700
O4—C101.333 (2)C12—C131.319 (3)
O4—C111.447 (3)C12—H12A0.9300
C1—C61.385 (3)C13—C141.480 (3)
C1—C21.386 (3)C13—H13A0.9300
C2—C31.375 (3)C14—C151.388 (3)
C2—H2A0.9300C14—C191.398 (3)
C3—C41.381 (4)C15—C161.379 (3)
C3—H3A0.9300C15—H15A0.9300
C4—C51.380 (3)C16—C171.382 (3)
C4—H4A0.9300C16—H16A0.9300
C5—C61.405 (3)C17—C181.374 (4)
C5—H5A0.9300C17—H17A0.9300
C6—C71.426 (3)C18—C191.382 (3)
C7—C81.349 (3)C18—H18A0.9300
C7—H7A0.9300C19—H19A0.9300
C8—C91.469 (3)
C1—O1—C9123.31 (16)O4—C10—C8114.69 (17)
C10—O4—C11115.52 (16)O4—C11—C12109.07 (18)
O1—C1—C6120.76 (18)O4—C11—H11A109.9
O1—C1—C2117.44 (19)C12—C11—H11A109.9
C6—C1—C2121.8 (2)O4—C11—H11B109.9
C3—C2—C1118.3 (2)C12—C11—H11B109.9
C3—C2—H2A120.9H11A—C11—H11B108.3
C1—C2—H2A120.9C13—C12—C11126.8 (2)
C2—C3—C4121.7 (2)C13—C12—H12A116.6
C2—C3—H3A119.1C11—C12—H12A116.6
C4—C3—H3A119.1C12—C13—C14126.4 (2)
C5—C4—C3119.6 (2)C12—C13—H13A116.8
C5—C4—H4A120.2C14—C13—H13A116.8
C3—C4—H4A120.2C15—C14—C19117.52 (19)
C4—C5—C6120.2 (2)C15—C14—C13119.69 (19)
C4—C5—H5A119.9C19—C14—C13122.79 (19)
C6—C5—H5A119.9C16—C15—C14121.5 (2)
C1—C6—C5118.45 (19)C16—C15—H15A119.2
C1—C6—C7117.54 (18)C14—C15—H15A119.2
C5—C6—C7124.00 (19)C15—C16—C17120.1 (2)
C8—C7—C6122.51 (18)C15—C16—H16A119.9
C8—C7—H7A118.7C17—C16—H16A119.9
C6—C7—H7A118.7C18—C17—C16119.4 (2)
C7—C8—C9120.19 (18)C18—C17—H17A120.3
C7—C8—C10116.55 (18)C16—C17—H17A120.3
C9—C8—C10123.26 (17)C17—C18—C19120.6 (2)
O2—C9—O1115.64 (19)C17—C18—H18A119.7
O2—C9—C8128.7 (2)C19—C18—H18A119.7
O1—C9—C8115.68 (17)C18—C19—C14120.8 (2)
O3—C10—O4123.20 (19)C18—C19—H19A119.6
O3—C10—C8122.10 (18)C14—C19—H19A119.6
C9—O1—C1—C60.9 (3)C7—C8—C9—O11.1 (3)
C9—O1—C1—C2−179.7 (2)C10—C8—C9—O1−178.51 (18)
O1—C1—C2—C3−180.0 (2)C11—O4—C10—O3−1.0 (3)
C6—C1—C2—C3−0.5 (4)C11—O4—C10—C8177.69 (18)
C1—C2—C3—C40.5 (4)C7—C8—C10—O3−2.4 (3)
C2—C3—C4—C50.2 (4)C9—C8—C10—O3177.2 (2)
C3—C4—C5—C6−1.0 (4)C7—C8—C10—O4178.87 (18)
O1—C1—C6—C5179.21 (19)C9—C8—C10—O4−1.5 (3)
C2—C1—C6—C5−0.2 (3)C10—O4—C11—C12−166.07 (19)
O1—C1—C6—C7−0.2 (3)O4—C11—C12—C13−3.8 (3)
C2—C1—C6—C7−179.6 (2)C11—C12—C13—C14−179.2 (2)
C4—C5—C6—C11.0 (3)C12—C13—C14—C15175.4 (2)
C4—C5—C6—C7−179.7 (2)C12—C13—C14—C19−4.5 (3)
C1—C6—C7—C8−0.1 (3)C19—C14—C15—C16−1.2 (3)
C5—C6—C7—C8−179.4 (2)C13—C14—C15—C16178.8 (2)
C6—C7—C8—C9−0.4 (3)C14—C15—C16—C170.0 (4)
C6—C7—C8—C10179.19 (19)C15—C16—C17—C181.4 (4)
C1—O1—C9—O2178.6 (2)C16—C17—C18—C19−1.5 (4)
C1—O1—C9—C8−1.4 (3)C17—C18—C19—C140.2 (4)
C7—C8—C9—O2−178.9 (2)C15—C14—C19—C181.1 (3)
C10—C8—C9—O21.5 (4)C13—C14—C19—C18−178.9 (2)
D—H···AD—HH···AD···AD—H···A
C5—H5A···O3i0.932.543.344 (3)145
C7—H7A···O3i0.932.463.292 (3)149
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C5—H5A⋯O3i 0.932.543.344 (3)145
C7—H7A⋯O3i 0.932.463.292 (3)149

Symmetry code: (i) .

  7 in total

Review 1.  Recent progress in the development of coumarin derivatives as potent anti-HIV agents.

Authors:  Donglei Yu; Madoka Suzuki; Lan Xie; Susan L Morris-Natschke; Kuo-Hsiung Lee
Journal:  Med Res Rev       Date:  2003-05       Impact factor: 12.944

Review 2.  New developments in natural products-based anti-AIDS research.

Authors:  Donglei Yu; Susan L Morris-Natschke; Kuo-Hsiung Lee
Journal:  Med Res Rev       Date:  2007-01       Impact factor: 12.944

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

4.  Synthesis and antiinflammatory activity of coumarin derivatives.

Authors:  Christos A Kontogiorgis; Dimitra J Hadjipavlou-Litina
Journal:  J Med Chem       Date:  2005-10-06       Impact factor: 7.446

Review 5.  Simple coumarins and analogues in medicinal chemistry: occurrence, synthesis and biological activity.

Authors:  F Borges; F Roleira; N Milhazes; L Santana; E Uriarte
Journal:  Curr Med Chem       Date:  2005       Impact factor: 4.530

6.  Menthyl 2-oxo-2H-chromene-3-carboxyl-ate.

Authors:  Cui-Lian Xu; Shan-Yu Liu; Gang Chen; Guo-Yu Yang; Ming-Qin Zhao
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-09-12

7.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  7 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.