Literature DB >> 21578634

{N,N-Dimethyl-N'-[phen-yl(2-pyrid-yl)methyl-ene]ethane-1,2-diamine-κN,N',N''}dithio-cyanato-κN,κS-copper(II).

Xiu-Qing Zhang1, Chun-Ying Li, He-Dong Bian, Qing Yu, Hong Liang.   

Abstract

In the title complex, [Cu(NCS)(2)(C(16)H(19)N(3))], the Cu(II) atom is coordinated by a total of four N atoms; three from one tridentate Schiff base ligand and one from one of the NCS(-) ions. The S atom from the other NCS(-) ion completes the distorted square-pyramidal coordination.

Entities:  

Year:  2009        PMID: 21578634      PMCID: PMC2972011          DOI: 10.1107/S1600536809048594

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to Schiff base complexes, see: Shi et al. (2004 ▶); Chandra & Sangeetika (2004 ▶); Ramesh & Maheswaran (2003 ▶); Guo et al. (2009 ▶). For a description of the geometry of five-coordinated metal complexes, see: Addison et al. (1984 ▶).

Experimental

Crystal data

[Cu(NCS)2(C16H19N3)] M = 433.04 Orthorhombic, a = 7.6524 (13) Å b = 9.2048 (15) Å c = 27.931 (5) Å V = 1967.4 (6) Å3 Z = 4 Mo Kα radiation μ = 1.33 mm−1 T = 294 K 0.30 × 0.24 × 0.20 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.748, T max = 1.000 11093 measured reflections 3978 independent reflections 3035 reflections with I > 2σ(I) R int = 0.034

Refinement

R[F 2 > 2σ(F 2)] = 0.050 wR(F 2) = 0.130 S = 1.07 3978 reflections 238 parameters 6 restraints H-atom parameters constrained Δρmax = 0.80 e Å−3 Δρmin = −0.51 e Å−3 Data collection: SMART (Bruker, 1998 ▶); cell refinement: SAINT (Bruker, 1998 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809048594/kj2135sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809048594/kj2135Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cu(NCS)2(C16H19N3)]Dx = 1.462 Mg m3
Mr = 433.04Mo Kα radiation, λ = 0.71073 Å
Orthorhombic, P212121Cell parameters from 3480 reflections
a = 7.6524 (13) Åθ = 2.7–25.6°
b = 9.2048 (15) ŵ = 1.33 mm1
c = 27.931 (5) ÅT = 294 K
V = 1967.4 (6) Å3Block, blue
Z = 40.30 × 0.24 × 0.20 mm
F(000) = 892
Bruker APEXII CCD area-detector diffractometer3978 independent reflections
Radiation source: fine-focus sealed tube3035 reflections with I > 2σ(I)
graphiteRint = 0.034
phi and ω scansθmax = 26.4°, θmin = 2.3°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −9→9
Tmin = 0.748, Tmax = 1.000k = −11→9
11093 measured reflectionsl = −34→31
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.050Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.130H-atom parameters constrained
S = 1.07w = 1/[σ2(Fo2) + (0.0567P)2 + 2.0946P] where P = (Fo2 + 2Fc2)/3
3978 reflections(Δ/σ)max = 0.001
238 parametersΔρmax = 0.80 e Å3
6 restraintsΔρmin = −0.51 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cu10.26036 (8)0.95205 (6)0.07382 (2)0.04339 (19)
S1−0.0307 (2)0.9109 (2)−0.07293 (6)0.0670 (5)
S20.0488 (3)1.1662 (2)0.10308 (7)0.0735 (5)
N10.1524 (7)0.9185 (6)0.01206 (16)0.0609 (14)
N2−0.0282 (8)1.0836 (9)0.1945 (2)0.098 (2)
N30.1284 (5)0.7992 (5)0.11202 (15)0.0415 (10)
N40.4058 (5)0.9435 (5)0.13148 (14)0.0391 (9)
N50.4643 (6)1.0786 (5)0.04853 (14)0.0429 (10)
C10.0763 (7)0.9159 (6)−0.02339 (18)0.0422 (12)
C20.0070 (9)1.1144 (8)0.1584 (3)0.071 (2)
C3−0.0085 (7)0.7208 (7)0.0973 (2)0.0509 (14)
H3−0.06060.74160.06800.061*
C4−0.0730 (9)0.6097 (9)0.1250 (3)0.078 (2)
H4−0.16450.55270.11370.093*
C5−0.0016 (9)0.5823 (8)0.1698 (3)0.077 (2)
H5−0.04540.50800.18890.092*
C60.1341 (8)0.6666 (7)0.1854 (2)0.0561 (16)
H60.18210.65200.21560.067*
C70.1993 (6)0.7740 (6)0.15551 (17)0.0388 (12)
C80.3525 (7)0.8643 (6)0.16633 (16)0.0376 (11)
C90.4422 (7)0.8568 (6)0.21348 (18)0.0414 (12)
C100.6136 (9)0.8125 (9)0.2169 (3)0.075 (2)
H100.67370.78540.18940.090*
C110.6961 (10)0.8079 (9)0.2600 (3)0.083 (2)
H110.81030.77390.26180.100*
C120.6143 (10)0.8520 (9)0.2999 (2)0.072 (2)
H120.67270.85230.32910.086*
C130.4464 (12)0.8959 (10)0.2973 (2)0.094 (3)
H130.38890.92480.32500.113*
C140.3591 (10)0.8986 (9)0.2545 (2)0.076 (2)
H140.24330.92890.25340.091*
C150.5594 (7)1.0370 (7)0.13190 (19)0.0511 (14)
H15A0.66420.97990.12650.061*
H15B0.56991.08550.16260.061*
C160.5371 (8)1.1467 (6)0.0926 (2)0.0508 (14)
H16A0.45911.22320.10340.061*
H16B0.64931.19040.08530.061*
C170.4088 (9)1.1937 (7)0.0152 (2)0.0620 (17)
H17A0.50651.25520.00800.093*
H17B0.31791.25050.02980.093*
H17C0.36561.1505−0.01370.093*
C180.5928 (9)0.9836 (8)0.0258 (2)0.0673 (18)
H18A0.54540.9456−0.00340.101*
H18B0.62070.90490.04700.101*
H18C0.69691.03800.01890.101*
U11U22U33U12U13U23
Cu10.0457 (3)0.0544 (3)0.0300 (3)−0.0063 (4)−0.0057 (3)0.0011 (3)
S10.0712 (10)0.0874 (12)0.0424 (8)−0.0034 (9)−0.0207 (8)−0.0084 (9)
S20.0689 (11)0.0779 (12)0.0737 (12)0.0142 (10)−0.0035 (9)0.0054 (10)
N10.071 (3)0.078 (4)0.034 (2)−0.011 (3)−0.014 (2)0.000 (3)
N20.075 (4)0.151 (6)0.067 (4)−0.047 (4)0.029 (3)−0.049 (4)
N30.035 (2)0.050 (3)0.040 (2)−0.003 (2)0.0030 (19)−0.007 (2)
N40.038 (2)0.047 (2)0.032 (2)−0.002 (2)−0.0039 (17)0.000 (2)
N50.047 (2)0.047 (3)0.035 (2)−0.005 (2)0.0029 (19)0.006 (2)
C10.046 (3)0.043 (3)0.038 (3)−0.009 (2)0.000 (2)−0.005 (2)
C20.054 (4)0.080 (5)0.079 (5)−0.010 (3)−0.009 (4)−0.020 (4)
C30.041 (3)0.064 (4)0.048 (3)−0.003 (3)0.004 (3)−0.002 (3)
C40.050 (4)0.088 (5)0.095 (6)−0.030 (4)−0.005 (4)0.009 (4)
C50.054 (4)0.083 (5)0.094 (5)−0.025 (4)0.011 (4)0.027 (4)
C60.048 (3)0.070 (4)0.050 (3)0.000 (3)−0.001 (3)0.018 (3)
C70.032 (3)0.052 (3)0.032 (3)0.004 (2)0.006 (2)−0.001 (2)
C80.041 (3)0.042 (3)0.030 (2)0.015 (2)0.002 (2)−0.003 (2)
C90.048 (3)0.043 (3)0.033 (3)0.004 (3)−0.004 (2)0.001 (2)
C100.058 (4)0.111 (6)0.056 (4)0.034 (4)−0.006 (3)0.008 (4)
C110.064 (5)0.124 (7)0.061 (4)0.016 (4)−0.023 (3)0.016 (4)
C120.081 (5)0.085 (5)0.050 (4)−0.014 (4)−0.026 (4)0.022 (4)
C130.107 (7)0.134 (8)0.041 (4)0.031 (6)−0.009 (4)−0.007 (4)
C140.069 (4)0.124 (6)0.035 (3)0.044 (4)−0.006 (3)−0.010 (4)
C150.045 (3)0.063 (4)0.045 (3)−0.004 (3)−0.011 (2)0.006 (3)
C160.059 (3)0.051 (3)0.043 (3)−0.010 (3)−0.009 (3)0.003 (3)
C170.071 (4)0.069 (4)0.046 (3)−0.010 (3)−0.002 (3)0.019 (3)
C180.068 (4)0.067 (4)0.067 (4)0.002 (3)0.019 (3)0.002 (3)
Cu1—N11.937 (4)C7—C81.468 (7)
Cu1—N41.959 (4)C8—C91.487 (7)
Cu1—N32.034 (4)C9—C141.365 (8)
Cu1—N52.071 (4)C9—C101.376 (8)
Cu1—S22.679 (2)C10—C111.361 (9)
S1—C11.609 (5)C10—H100.9300
S2—C21.648 (9)C11—C121.341 (10)
N1—C11.149 (7)C11—H110.9300
N2—C21.082 (9)C12—C131.349 (11)
N3—C31.337 (7)C12—H120.9300
N3—C71.351 (6)C13—C141.369 (9)
N4—C81.283 (6)C13—H130.9300
N4—C151.457 (7)C14—H140.9300
N5—C181.461 (7)C15—C161.501 (8)
N5—C171.472 (7)C15—H15A0.9700
N5—C161.490 (7)C15—H15B0.9700
C3—C41.373 (9)C16—H16A0.9700
C3—H30.9300C16—H16B0.9700
C4—C51.389 (10)C17—H17A0.9600
C4—H40.9300C17—H17B0.9600
C5—C61.368 (9)C17—H17C0.9600
C5—H50.9300C18—H18A0.9600
C6—C71.386 (8)C18—H18B0.9600
C6—H60.9300C18—H18C0.9600
N1—Cu1—N4165.4 (2)C7—C8—C9121.7 (4)
N1—Cu1—N398.3 (2)C14—C9—C10118.0 (6)
N4—Cu1—N379.81 (18)C14—C9—C8121.0 (5)
N1—Cu1—N596.2 (2)C10—C9—C8121.0 (5)
N4—Cu1—N582.82 (17)C11—C10—C9120.8 (7)
N3—Cu1—N5160.36 (17)C11—C10—H10119.6
N1—Cu1—S297.53 (18)C9—C10—H10119.6
N4—Cu1—S297.02 (13)C12—C11—C10120.7 (7)
N3—Cu1—S292.79 (13)C12—C11—H11119.7
N5—Cu1—S298.38 (13)C10—C11—H11119.7
C2—S2—Cu1101.0 (3)C11—C12—C13119.3 (6)
C1—N1—Cu1170.7 (5)C11—C12—H12120.4
C3—N3—C7119.9 (5)C13—C12—H12120.4
C3—N3—Cu1127.0 (4)C12—C13—C14121.2 (7)
C7—N3—Cu1113.0 (3)C12—C13—H13119.4
C8—N4—C15125.9 (4)C14—C13—H13119.4
C8—N4—Cu1117.8 (3)C9—C14—C13120.0 (7)
C15—N4—Cu1116.2 (3)C9—C14—H14120.0
C18—N5—C17110.5 (5)C13—C14—H14120.0
C18—N5—C16111.0 (5)N4—C15—C16107.4 (4)
C17—N5—C16109.1 (4)N4—C15—H15A110.2
C18—N5—Cu1108.6 (4)C16—C15—H15A110.2
C17—N5—Cu1113.7 (4)N4—C15—H15B110.2
C16—N5—Cu1103.7 (3)C16—C15—H15B110.2
N1—C1—S1179.5 (6)H15A—C15—H15B108.5
N2—C2—S2176.5 (8)N5—C16—C15111.3 (5)
N3—C3—C4120.7 (6)N5—C16—H16A109.4
N3—C3—H3119.6C15—C16—H16A109.4
C4—C3—H3119.6N5—C16—H16B109.4
C3—C4—C5120.0 (6)C15—C16—H16B109.4
C3—C4—H4120.0H16A—C16—H16B108.0
C5—C4—H4120.0N5—C17—H17A109.5
C6—C5—C4118.9 (6)N5—C17—H17B109.5
C6—C5—H5120.6H17A—C17—H17B109.5
C4—C5—H5120.6N5—C17—H17C109.5
C5—C6—C7119.1 (6)H17A—C17—H17C109.5
C5—C6—H6120.5H17B—C17—H17C109.5
C7—C6—H6120.5N5—C18—H18A109.5
N3—C7—C6121.3 (5)N5—C18—H18B109.5
N3—C7—C8114.1 (4)H18A—C18—H18B109.5
C6—C7—C8124.5 (5)N5—C18—H18C109.5
N4—C8—C7114.8 (4)H18A—C18—H18C109.5
N4—C8—C9123.5 (5)H18B—C18—H18C109.5
N1—Cu1—S2—C2134.4 (3)C3—C4—C5—C6−0.7 (11)
N4—Cu1—S2—C2−44.5 (3)C4—C5—C6—C7−1.7 (10)
N3—Cu1—S2—C235.6 (3)C3—N3—C7—C60.7 (8)
N5—Cu1—S2—C2−128.2 (3)Cu1—N3—C7—C6−175.7 (4)
N1—Cu1—N3—C3−8.9 (5)C3—N3—C7—C8177.9 (4)
N4—Cu1—N3—C3−174.2 (5)Cu1—N3—C7—C81.5 (5)
N5—Cu1—N3—C3−146.0 (5)C5—C6—C7—N31.7 (9)
S2—Cu1—N3—C389.2 (4)C5—C6—C7—C8−175.2 (5)
N1—Cu1—N3—C7167.2 (4)C15—N4—C8—C7−176.7 (5)
N4—Cu1—N3—C71.9 (3)Cu1—N4—C8—C78.0 (6)
N5—Cu1—N3—C730.1 (7)C15—N4—C8—C90.2 (8)
S2—Cu1—N3—C7−94.7 (3)Cu1—N4—C8—C9−175.1 (4)
N1—Cu1—N4—C8−89.6 (9)N3—C7—C8—N4−6.1 (6)
N3—Cu1—N4—C8−5.7 (4)C6—C7—C8—N4171.0 (5)
N5—Cu1—N4—C8−176.5 (4)N3—C7—C8—C9176.9 (4)
S2—Cu1—N4—C885.9 (4)C6—C7—C8—C9−6.0 (8)
N1—Cu1—N4—C1594.7 (9)N4—C8—C9—C14118.4 (7)
N3—Cu1—N4—C15178.6 (4)C7—C8—C9—C14−64.9 (7)
N5—Cu1—N4—C157.8 (4)N4—C8—C9—C10−59.2 (8)
S2—Cu1—N4—C15−89.8 (4)C7—C8—C9—C10117.5 (7)
N1—Cu1—N5—C18−75.9 (4)C14—C9—C10—C111.3 (11)
N4—Cu1—N5—C1889.4 (4)C8—C9—C10—C11179.0 (7)
N3—Cu1—N5—C1861.5 (7)C9—C10—C11—C12−2.7 (13)
S2—Cu1—N5—C18−174.5 (4)C10—C11—C12—C132.5 (13)
N1—Cu1—N5—C1747.6 (4)C11—C12—C13—C14−1.1 (14)
N4—Cu1—N5—C17−147.1 (4)C10—C9—C14—C130.1 (11)
N3—Cu1—N5—C17−175.0 (5)C8—C9—C14—C13−177.6 (7)
S2—Cu1—N5—C17−51.0 (4)C12—C13—C14—C9−0.2 (14)
N1—Cu1—N5—C16165.9 (4)C8—N4—C15—C16−159.8 (5)
N4—Cu1—N5—C16−28.7 (3)Cu1—N4—C15—C1615.6 (6)
N3—Cu1—N5—C16−56.7 (6)C18—N5—C16—C15−70.3 (6)
S2—Cu1—N5—C1667.3 (3)C17—N5—C16—C15167.6 (5)
C7—N3—C3—C4−3.2 (8)Cu1—N5—C16—C1546.1 (5)
Cu1—N3—C3—C4172.7 (5)N4—C15—C16—N5−41.5 (6)
N3—C3—C4—C53.2 (10)
  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Bis[1-(2-naphthyl-imino-meth-yl)-2-naphtholato-κN,O]copper(II).

Authors:  Zhenghua Guo; Lianzhi Li; Chengyuan Wang; Jinghong Li; Tao Xu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-08-08

3.  EPR, magnetic and spectral studies of copper(II) and nickel(II) complexes of schiff base macrocyclic ligand derived from thiosemicarbazide and glyoxal.

Authors:  Sulekh Chandra; X Sangeetika
Journal:  Spectrochim Acta A Mol Biomol Spectrosc       Date:  2004-01       Impact factor: 4.098

4.  Synthesis, spectra, dioxygen affinity and antifungal activity of Ru(III) Schiff base complexes.

Authors:  R Ramesh; S Maheswaran
Journal:  J Inorg Biochem       Date:  2003-09-01       Impact factor: 4.155

  4 in total
  2 in total

1.  Dichlorido{N,N-dimethyl-N'-[1-(2-pyrid-yl)ethyl-idene]ethane-1,2-diamine-κN,N',N''}copper(II).

Authors:  Muhammad Saleh Salga; Hamid Khaledi; Hapipah Mohd Ali; Rustam Puteh
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-04-10

2.  Bromido{N-methyl-N'-[1-(2-pyrid-yl)ethyl-idene]ethane-1,2-diamine-κN,N',N''}-(thio-cyanato-κN)-copper(II).

Authors:  Li-Jun Liu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-07-17
  2 in total

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