| Literature DB >> 21578558 |
Zhao-Peng Qi1, Ai-Dong Wang, Hui Zhang, Xi-Xi Wang.
Abstract
The centrosymmetric dinuclear Cu(II) complex, [Cu(2)Cl(4)(C(24)H(21)N(5)O(4))(2)], was synthesized by the reaction of CuCl(2)·2H(2)O with the tripodal ligand 2,2'-[3-(1H-imid-azol-4-ylmeth-yl)-3-aza-pentane-1,5-di-yl]diphthalimide (L). Each of the Cu(II) ions is coordinated by two N atoms from the ligand, two bridging Cl atoms and one terminal Cl atom. The Cu(II) coordination can be best be described as a transition state between four- and five-coordination, since one of the bridging Cl atoms has a much longer Cu-Cl bond distance [2.7069 (13) Å] than the other [2.2630 (12) Å]. In addition, the Cu⋯Cu distance is 3.622 (1) Å. The three-dimensional structrure is generated by N-H⋯O, C-H⋯O and C-H⋯Cl hydrogen bonds and π-π inter-actions [centroid-centroid distances = 3.658 (4) and 4.020 (4) Å].Entities:
Year: 2009 PMID: 21578558 PMCID: PMC2971966 DOI: 10.1107/S1600536809045565
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [Cu2Cl4(C24H21N5O4)2] | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 1643 reflections |
| θ = 2.5–21.3° | |
| µ = 1.17 mm−1 | |
| β = 105.593 (4)° | Block, green |
| 0.2 × 0.1 × 0.1 mm | |
| Bruker SMART CCD area-detector diffractometer | 4218 independent reflections |
| Radiation source: fine-focus sealed tube | 3394 reflections with |
| graphite | |
| φ and ω scans | θmax = 25.0°, θmin = 2.1° |
| Absorption correction: multi-scan ( | |
| 11745 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 4218 reflections | (Δ/σ)max = 0.001 |
| 325 parameters | Δρmax = 0.61 e Å−3 |
| 0 restraints | Δρmin = −0.30 e Å−3 |
| 0 constraints |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Cu1 | 0.93018 (7) | 0.11519 (4) | 0.50753 (3) | 0.0346 (2) | |
| Cl1 | 1.12292 (17) | 0.19333 (11) | 0.58499 (8) | 0.0620 (4) | |
| Cl2 | 0.89142 (14) | −0.05739 (8) | 0.54767 (6) | 0.0369 (3) | |
| O1 | 0.7721 (7) | 0.4237 (3) | 0.4369 (2) | 0.0851 (15) | |
| O2 | 0.9233 (5) | 0.2868 (3) | 0.26250 (19) | 0.0620 (11) | |
| O3 | 0.6332 (6) | 0.1249 (3) | 0.1982 (2) | 0.0799 (14) | |
| O4 | 0.5644 (5) | −0.1647 (3) | 0.2630 (2) | 0.0696 (12) | |
| N1 | 0.7125 (5) | 0.1113 (2) | 0.41720 (19) | 0.0331 (9) | |
| N2 | 0.7596 (5) | 0.1576 (3) | 0.54753 (19) | 0.0371 (9) | |
| N3 | 0.5988 (6) | 0.2086 (3) | 0.6073 (2) | 0.0573 (13) | |
| H3A | 0.5670 | 0.2339 | 0.6400 | 0.069* | |
| N4 | 0.8396 (5) | 0.3347 (3) | 0.3553 (2) | 0.0426 (10) | |
| N5 | 0.6000 (5) | −0.0116 (3) | 0.2470 (2) | 0.0445 (10) | |
| C1 | 0.5748 (6) | 0.0876 (3) | 0.4473 (2) | 0.0372 (11) | |
| H1A | 0.4704 | 0.1049 | 0.4158 | 0.045* | |
| H1B | 0.5733 | 0.0225 | 0.4553 | 0.045* | |
| C2 | 0.6000 (6) | 0.1372 (3) | 0.5129 (3) | 0.0374 (12) | |
| C3 | 0.4990 (7) | 0.1690 (4) | 0.5504 (3) | 0.0496 (14) | |
| H3B | 0.3849 | 0.1645 | 0.5392 | 0.060* | |
| C4 | 0.7537 (7) | 0.2019 (4) | 0.6041 (3) | 0.0517 (14) | |
| H4A | 0.8446 | 0.2250 | 0.6368 | 0.062* | |
| C5 | 0.6910 (6) | 0.2056 (3) | 0.3885 (3) | 0.0395 (12) | |
| H5A | 0.6333 | 0.2423 | 0.4146 | 0.047* | |
| H5B | 0.6248 | 0.2037 | 0.3410 | 0.047* | |
| C6 | 0.8551 (6) | 0.2485 (3) | 0.3918 (3) | 0.0489 (14) | |
| H6A | 0.9144 | 0.2582 | 0.4396 | 0.059* | |
| H6B | 0.9193 | 0.2069 | 0.3720 | 0.059* | |
| C7 | 0.8081 (7) | 0.4161 (4) | 0.3837 (3) | 0.0510 (14) | |
| C8 | 0.8283 (6) | 0.4883 (3) | 0.3344 (2) | 0.0424 (12) | |
| C9 | 0.8152 (8) | 0.5819 (4) | 0.3369 (3) | 0.0586 (16) | |
| H9A | 0.7858 | 0.6107 | 0.3730 | 0.070* | |
| C10 | 0.8480 (8) | 0.6310 (4) | 0.2832 (3) | 0.0598 (16) | |
| H10A | 0.8419 | 0.6942 | 0.2835 | 0.072* | |
| C11 | 0.8889 (7) | 0.5882 (4) | 0.2298 (3) | 0.0557 (15) | |
| H11A | 0.9083 | 0.6232 | 0.1943 | 0.067* | |
| C12 | 0.9023 (7) | 0.4950 (4) | 0.2270 (3) | 0.0484 (13) | |
| H12A | 0.9306 | 0.4664 | 0.1906 | 0.058* | |
| C13 | 0.8722 (6) | 0.4459 (3) | 0.2804 (3) | 0.0410 (12) | |
| C14 | 0.8824 (6) | 0.3467 (3) | 0.2942 (3) | 0.0412 (12) | |
| C15 | 0.7243 (6) | 0.0443 (3) | 0.3632 (2) | 0.0383 (12) | |
| H15A | 0.7659 | −0.0126 | 0.3857 | 0.046* | |
| H15B | 0.8046 | 0.0665 | 0.3405 | 0.046* | |
| C16 | 0.5645 (6) | 0.0249 (4) | 0.3085 (3) | 0.0477 (13) | |
| H16A | 0.4994 | −0.0186 | 0.3261 | 0.057* | |
| H16B | 0.5013 | 0.0806 | 0.2971 | 0.057* | |
| C17 | 0.6355 (7) | 0.0435 (4) | 0.1965 (3) | 0.0555 (15) | |
| C18 | 0.6740 (7) | −0.0193 (4) | 0.1452 (3) | 0.0559 (15) | |
| C19 | 0.7175 (9) | −0.0007 (5) | 0.0860 (3) | 0.083 (2) | |
| H19A | 0.7253 | 0.0587 | 0.0711 | 0.099* | |
| C20 | 0.7496 (10) | −0.0755 (7) | 0.0492 (3) | 0.089 (2) | |
| H20A | 0.7801 | −0.0659 | 0.0086 | 0.107* | |
| C21 | 0.7373 (8) | −0.1627 (6) | 0.0710 (4) | 0.075 (2) | |
| H21A | 0.7602 | −0.2112 | 0.0454 | 0.090* | |
| C22 | 0.6916 (7) | −0.1796 (5) | 0.1305 (3) | 0.0638 (17) | |
| H22A | 0.6835 | −0.2390 | 0.1453 | 0.077* | |
| C23 | 0.6583 (7) | −0.1073 (4) | 0.1675 (3) | 0.0506 (14) | |
| C24 | 0.6043 (7) | −0.1033 (4) | 0.2314 (3) | 0.0504 (14) |
| Cu1 | 0.0370 (4) | 0.0344 (4) | 0.0361 (4) | 0.0013 (3) | 0.0159 (3) | −0.0045 (3) |
| Cl1 | 0.0480 (8) | 0.0709 (11) | 0.0690 (10) | −0.0078 (7) | 0.0189 (7) | −0.0349 (8) |
| Cl2 | 0.0405 (7) | 0.0386 (7) | 0.0359 (7) | 0.0054 (5) | 0.0173 (5) | 0.0011 (5) |
| O1 | 0.145 (5) | 0.064 (3) | 0.068 (3) | 0.003 (3) | 0.067 (3) | 0.005 (2) |
| O2 | 0.099 (3) | 0.039 (2) | 0.054 (2) | 0.013 (2) | 0.031 (2) | −0.0029 (19) |
| O3 | 0.123 (4) | 0.044 (3) | 0.076 (3) | −0.005 (3) | 0.031 (3) | 0.005 (2) |
| O4 | 0.094 (3) | 0.056 (3) | 0.063 (3) | −0.016 (2) | 0.029 (2) | 0.002 (2) |
| N1 | 0.040 (2) | 0.030 (2) | 0.034 (2) | 0.0029 (17) | 0.0180 (18) | 0.0043 (17) |
| N2 | 0.038 (2) | 0.043 (2) | 0.034 (2) | 0.0052 (19) | 0.0167 (19) | −0.0045 (19) |
| N3 | 0.067 (3) | 0.064 (3) | 0.050 (3) | 0.016 (3) | 0.031 (3) | −0.010 (2) |
| N4 | 0.055 (3) | 0.028 (2) | 0.048 (3) | −0.001 (2) | 0.021 (2) | 0.008 (2) |
| N5 | 0.059 (3) | 0.039 (3) | 0.034 (2) | −0.007 (2) | 0.011 (2) | −0.004 (2) |
| C1 | 0.036 (3) | 0.036 (3) | 0.042 (3) | −0.007 (2) | 0.014 (2) | 0.005 (2) |
| C2 | 0.044 (3) | 0.034 (3) | 0.042 (3) | 0.004 (2) | 0.024 (2) | 0.007 (2) |
| C3 | 0.049 (3) | 0.052 (4) | 0.055 (4) | 0.010 (3) | 0.025 (3) | 0.007 (3) |
| C4 | 0.058 (4) | 0.056 (4) | 0.044 (3) | 0.006 (3) | 0.018 (3) | −0.011 (3) |
| C5 | 0.046 (3) | 0.036 (3) | 0.040 (3) | 0.006 (2) | 0.019 (2) | 0.005 (2) |
| C6 | 0.052 (3) | 0.036 (3) | 0.058 (4) | 0.000 (2) | 0.014 (3) | 0.016 (3) |
| C7 | 0.066 (4) | 0.046 (3) | 0.047 (3) | 0.000 (3) | 0.026 (3) | 0.009 (3) |
| C8 | 0.056 (3) | 0.034 (3) | 0.041 (3) | 0.000 (2) | 0.019 (3) | 0.002 (2) |
| C9 | 0.093 (5) | 0.035 (3) | 0.053 (4) | −0.007 (3) | 0.028 (3) | −0.006 (3) |
| C10 | 0.088 (5) | 0.027 (3) | 0.066 (4) | −0.009 (3) | 0.023 (4) | 0.003 (3) |
| C11 | 0.074 (4) | 0.045 (4) | 0.053 (4) | −0.008 (3) | 0.024 (3) | 0.015 (3) |
| C12 | 0.068 (4) | 0.042 (3) | 0.041 (3) | −0.005 (3) | 0.026 (3) | 0.005 (3) |
| C13 | 0.053 (3) | 0.028 (3) | 0.043 (3) | −0.006 (2) | 0.015 (2) | 0.001 (2) |
| C14 | 0.056 (3) | 0.032 (3) | 0.036 (3) | 0.000 (2) | 0.013 (2) | 0.001 (2) |
| C15 | 0.045 (3) | 0.034 (3) | 0.040 (3) | −0.001 (2) | 0.018 (2) | −0.006 (2) |
| C16 | 0.047 (3) | 0.053 (4) | 0.043 (3) | 0.000 (3) | 0.012 (2) | −0.006 (3) |
| C17 | 0.067 (4) | 0.046 (4) | 0.048 (3) | −0.001 (3) | 0.006 (3) | 0.003 (3) |
| C18 | 0.066 (4) | 0.062 (4) | 0.038 (3) | −0.005 (3) | 0.011 (3) | −0.004 (3) |
| C19 | 0.118 (6) | 0.080 (5) | 0.058 (4) | −0.005 (5) | 0.037 (4) | 0.010 (4) |
| C20 | 0.107 (6) | 0.123 (7) | 0.044 (4) | −0.010 (5) | 0.033 (4) | −0.012 (5) |
| C21 | 0.066 (4) | 0.097 (6) | 0.066 (5) | −0.009 (4) | 0.023 (4) | −0.031 (4) |
| C22 | 0.057 (4) | 0.065 (4) | 0.063 (4) | −0.007 (3) | 0.005 (3) | −0.018 (3) |
| C23 | 0.051 (3) | 0.049 (4) | 0.047 (3) | −0.005 (3) | 0.005 (3) | −0.008 (3) |
| C24 | 0.055 (3) | 0.052 (4) | 0.041 (3) | −0.009 (3) | 0.008 (3) | −0.006 (3) |
| Cu1—N2 | 1.932 (4) | C5—H5B | 0.9700 |
| Cu1—N1 | 2.211 (4) | C6—H6A | 0.9700 |
| Cu1—Cl1 | 2.2431 (15) | C6—H6B | 0.9700 |
| Cu1—Cl2i | 2.2630 (12) | C7—C8 | 1.493 (7) |
| Cu1—Cl2 | 2.7069 (13) | C8—C9 | 1.382 (7) |
| Cl2—Cu1i | 2.2630 (12) | C8—C13 | 1.386 (7) |
| O1—C7 | 1.196 (6) | C9—C10 | 1.389 (8) |
| O2—C14 | 1.192 (6) | C9—H9A | 0.9300 |
| O3—C17 | 1.198 (6) | C10—C11 | 1.368 (8) |
| O4—C24 | 1.202 (6) | C10—H10A | 0.9300 |
| N1—C1 | 1.489 (5) | C11—C12 | 1.376 (7) |
| N1—C15 | 1.489 (5) | C11—H11A | 0.9300 |
| N1—C5 | 1.492 (6) | C12—C13 | 1.375 (6) |
| N2—C4 | 1.325 (6) | C12—H12A | 0.9300 |
| N2—C2 | 1.373 (6) | C13—C14 | 1.481 (7) |
| N3—C4 | 1.329 (6) | C15—C16 | 1.522 (7) |
| N3—C3 | 1.358 (7) | C15—H15A | 0.9700 |
| N3—H3A | 0.8600 | C15—H15B | 0.9700 |
| N4—C7 | 1.382 (7) | C16—H16A | 0.9700 |
| N4—C14 | 1.383 (6) | C16—H16B | 0.9700 |
| N4—C6 | 1.452 (6) | C17—C18 | 1.485 (8) |
| N5—C24 | 1.385 (7) | C18—C19 | 1.366 (7) |
| N5—C17 | 1.392 (7) | C18—C23 | 1.387 (8) |
| N5—C16 | 1.453 (6) | C19—C20 | 1.393 (10) |
| C1—C2 | 1.472 (7) | C19—H19A | 0.9300 |
| C1—H1A | 0.9700 | C20—C21 | 1.367 (10) |
| C1—H1B | 0.9700 | C20—H20A | 0.9300 |
| C2—C3 | 1.364 (6) | C21—C22 | 1.377 (8) |
| C3—H3B | 0.9300 | C21—H21A | 0.9300 |
| C4—H4A | 0.9300 | C22—C23 | 1.368 (8) |
| C5—C6 | 1.506 (6) | C22—H22A | 0.9300 |
| C5—H5A | 0.9700 | C23—C24 | 1.479 (7) |
| N2—Cu1—N1 | 78.75 (15) | N4—C7—C8 | 105.7 (4) |
| N2—Cu1—Cl1 | 91.52 (13) | C9—C8—C13 | 121.1 (5) |
| N1—Cu1—Cl1 | 150.69 (11) | C9—C8—C7 | 131.1 (5) |
| N2—Cu1—Cl2i | 173.87 (13) | C13—C8—C7 | 107.8 (5) |
| N1—Cu1—Cl2i | 95.78 (10) | C8—C9—C10 | 116.9 (5) |
| Cl1—Cu1—Cl2i | 94.61 (5) | C8—C9—H9A | 121.5 |
| N2—Cu1—Cl2 | 90.81 (12) | C10—C9—H9A | 121.5 |
| N1—Cu1—Cl2 | 94.67 (10) | C11—C10—C9 | 121.3 (5) |
| Cl1—Cu1—Cl2 | 113.23 (6) | C11—C10—H10A | 119.3 |
| Cl2i—Cu1—Cl2 | 86.86 (4) | C9—C10—H10A | 119.3 |
| Cu1i—Cl2—Cu1 | 93.14 (4) | C10—C11—C12 | 122.0 (5) |
| C1—N1—C15 | 110.8 (4) | C10—C11—H11A | 119.0 |
| C1—N1—C5 | 110.3 (3) | C12—C11—H11A | 119.0 |
| C15—N1—C5 | 110.8 (3) | C13—C12—C11 | 117.1 (5) |
| C1—N1—Cu1 | 103.7 (3) | C13—C12—H12A | 121.5 |
| C15—N1—Cu1 | 114.5 (3) | C11—C12—H12A | 121.5 |
| C5—N1—Cu1 | 106.4 (3) | C12—C13—C8 | 121.5 (5) |
| C4—N2—C2 | 106.6 (4) | C12—C13—C14 | 130.5 (5) |
| C4—N2—Cu1 | 136.2 (4) | C8—C13—C14 | 108.0 (4) |
| C2—N2—Cu1 | 117.1 (3) | O2—C14—N4 | 124.4 (5) |
| C4—N3—C3 | 108.8 (4) | O2—C14—C13 | 129.5 (5) |
| C4—N3—H3A | 125.6 | N4—C14—C13 | 106.1 (4) |
| C3—N3—H3A | 125.6 | N1—C15—C16 | 115.7 (4) |
| C7—N4—C14 | 112.5 (4) | N1—C15—H15A | 108.4 |
| C7—N4—C6 | 123.2 (4) | C16—C15—H15A | 108.4 |
| C14—N4—C6 | 123.5 (4) | N1—C15—H15B | 108.4 |
| C24—N5—C17 | 112.1 (4) | C16—C15—H15B | 108.4 |
| C24—N5—C16 | 125.1 (4) | H15A—C15—H15B | 107.4 |
| C17—N5—C16 | 122.8 (5) | N5—C16—C15 | 110.0 (4) |
| C2—C1—N1 | 108.0 (4) | N5—C16—H16A | 109.7 |
| C2—C1—H1A | 110.1 | C15—C16—H16A | 109.7 |
| N1—C1—H1A | 110.1 | N5—C16—H16B | 109.7 |
| C2—C1—H1B | 110.1 | C15—C16—H16B | 109.7 |
| N1—C1—H1B | 110.1 | H16A—C16—H16B | 108.2 |
| H1A—C1—H1B | 108.4 | O3—C17—N5 | 123.4 (6) |
| C3—C2—N2 | 108.4 (5) | O3—C17—C18 | 130.4 (6) |
| C3—C2—C1 | 134.8 (5) | N5—C17—C18 | 106.1 (5) |
| N2—C2—C1 | 116.8 (4) | C19—C18—C23 | 122.7 (6) |
| N3—C3—C2 | 106.1 (5) | C19—C18—C17 | 130.1 (6) |
| N3—C3—H3B | 127.0 | C23—C18—C17 | 107.2 (5) |
| C2—C3—H3B | 127.0 | C18—C19—C20 | 116.3 (7) |
| N2—C4—N3 | 110.1 (5) | C18—C19—H19A | 121.8 |
| N2—C4—H4A | 125.0 | C20—C19—H19A | 121.8 |
| N3—C4—H4A | 125.0 | C21—C20—C19 | 121.7 (6) |
| N1—C5—C6 | 110.9 (4) | C21—C20—H20A | 119.2 |
| N1—C5—H5A | 109.5 | C19—C20—H20A | 119.2 |
| C6—C5—H5A | 109.5 | C20—C21—C22 | 120.8 (7) |
| N1—C5—H5B | 109.5 | C20—C21—H21A | 119.6 |
| C6—C5—H5B | 109.5 | C22—C21—H21A | 119.6 |
| H5A—C5—H5B | 108.0 | C23—C22—C21 | 118.7 (7) |
| N4—C6—C5 | 112.7 (4) | C23—C22—H22A | 120.7 |
| N4—C6—H6A | 109.0 | C21—C22—H22A | 120.7 |
| C5—C6—H6A | 109.0 | C22—C23—C18 | 119.8 (5) |
| N4—C6—H6B | 109.0 | C22—C23—C24 | 131.4 (6) |
| C5—C6—H6B | 109.0 | C18—C23—C24 | 108.8 (5) |
| H6A—C6—H6B | 107.8 | O4—C24—N5 | 125.6 (5) |
| O1—C7—N4 | 125.1 (5) | O4—C24—C23 | 128.8 (5) |
| O1—C7—C8 | 129.2 (5) | N5—C24—C23 | 105.6 (5) |
| H··· | ||||
| N3—H3A···O3ii | 0.86 | 2.37 | 3.022 (6) | 133 |
| C3—H3B···Cl1iii | 0.93 | 2.65 | 3.445 (6) | 144 |
| C4—H4A···O2ii | 0.93 | 2.45 | 3.131 (7) | 131 |
| C6—H6B···O2 | 0.97 | 2.51 | 2.870 (7) | 102 |
| C15—H15A···Cl1i | 0.97 | 2.82 | 3.769 (5) | 165 |
| C20—H20A···O1iv | 0.93 | 2.53 | 3.218 (9) | 131 |
Selected bond lengths (Å)
| Cu1—N2 | 1.932 (4) |
| Cu1—N1 | 2.211 (4) |
| Cu1—Cl1 | 2.2431 (15) |
| Cu1—Cl2i | 2.2630 (12) |
| Cu1—Cl2 | 2.7069 (13) |
Symmetry code: (i) .
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N3—H3 | 0.86 | 2.37 | 3.022 (6) | 133 |
| C3—H3 | 0.93 | 2.65 | 3.445 (6) | 144 |
| C4—H4 | 0.93 | 2.45 | 3.131 (7) | 131 |
| C6—H6 | 0.97 | 2.51 | 2.870 (7) | 102 |
| C15—H15 | 0.97 | 2.82 | 3.769 (5) | 165 |
| C20—H20 | 0.93 | 2.53 | 3.218 (9) | 131 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .