Literature DB >> 21578558

Di-μ-chlorido-bis-(chlorido{2,2'-[3-(1H-imidazol-4-ylmeth-yl)-3-aza-pentane-1,5-di-yl]diphthalimide}copper(II)).

Zhao-Peng Qi1, Ai-Dong Wang, Hui Zhang, Xi-Xi Wang.   

Abstract

The centrosymmetric dinuclear Cu(II) complex, [Cu(2)Cl(4)(C(24)H(21)N(5)O(4))(2)], was synthesized by the reaction of CuCl(2)·2H(2)O with the tripodal ligand 2,2'-[3-(1H-imid-azol-4-ylmeth-yl)-3-aza-pentane-1,5-di-yl]diphthalimide (L). Each of the Cu(II) ions is coordinated by two N atoms from the ligand, two bridging Cl atoms and one terminal Cl atom. The Cu(II) coordination can be best be described as a transition state between four- and five-coordination, since one of the bridging Cl atoms has a much longer Cu-Cl bond distance [2.7069 (13) Å] than the other [2.2630 (12) Å]. In addition, the CuCu distance is 3.622 (1) Å. The three-dimensional structrure is generated by N-H⋯O, C-H⋯O and C-H⋯Cl hydrogen bonds and π-π inter-actions [centroid-centroid distances = 3.658 (4) and 4.020 (4) Å].

Entities:  

Year:  2009        PMID: 21578558      PMCID: PMC2971966          DOI: 10.1107/S1600536809045565

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis, see: Qi et al. (2008 ▶). For the use of imidazole-containing tripodal ligands in supra­molecular chemistry and new functional materials, see: Higa et al. (2007 ▶); Kong et al. (2005 ▶); Katsuki et al. (2002 ▶). For a related structure with a similar coordination geometry around the metal atom, see: Yu et al. (2009 ▶).

Experimental

Crystal data

[Cu2Cl4(C24H21N5O4)2] M = 1155.80 Monoclinic, a = 8.4351 (9) Å b = 14.6867 (16) Å c = 20.1448 (19) Å β = 105.593 (4)° V = 2403.8 (4) Å3 Z = 2 Mo Kα radiation μ = 1.17 mm−1 T = 293 K 0.2 × 0.1 × 0.1 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2001 ▶) T min = 0.86, T max = 0.89 11745 measured reflections 4218 independent reflections 3394 reflections with I > 2σ(I) R int = 0.047

Refinement

R[F 2 > 2σ(F 2)] = 0.069 wR(F 2) = 0.150 S = 1.17 4218 reflections 325 parameters H-atom parameters constrained Δρmax = 0.61 e Å−3 Δρmin = −0.30 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809045565/kp2236sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809045565/kp2236Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cu2Cl4(C24H21N5O4)2]F(000) = 1180
Mr = 1155.80Dx = 1.597 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 1643 reflections
a = 8.4351 (9) Åθ = 2.5–21.3°
b = 14.6867 (16) ŵ = 1.17 mm1
c = 20.1448 (19) ÅT = 293 K
β = 105.593 (4)°Block, green
V = 2403.8 (4) Å30.2 × 0.1 × 0.1 mm
Z = 2
Bruker SMART CCD area-detector diffractometer4218 independent reflections
Radiation source: fine-focus sealed tube3394 reflections with I > 2σ(I)
graphiteRint = 0.047
φ and ω scansθmax = 25.0°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Bruker, 2001)h = −10→10
Tmin = 0.86, Tmax = 0.89k = −17→9
11745 measured reflectionsl = −22→23
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.069Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.150H-atom parameters constrained
S = 1.17w = 1/[σ2(Fo2) + (0.0656P)2 + 0.075P] where P = (Fo2 + 2Fc2)/3
4218 reflections(Δ/σ)max = 0.001
325 parametersΔρmax = 0.61 e Å3
0 restraintsΔρmin = −0.30 e Å3
0 constraints
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cu10.93018 (7)0.11519 (4)0.50753 (3)0.0346 (2)
Cl11.12292 (17)0.19333 (11)0.58499 (8)0.0620 (4)
Cl20.89142 (14)−0.05739 (8)0.54767 (6)0.0369 (3)
O10.7721 (7)0.4237 (3)0.4369 (2)0.0851 (15)
O20.9233 (5)0.2868 (3)0.26250 (19)0.0620 (11)
O30.6332 (6)0.1249 (3)0.1982 (2)0.0799 (14)
O40.5644 (5)−0.1647 (3)0.2630 (2)0.0696 (12)
N10.7125 (5)0.1113 (2)0.41720 (19)0.0331 (9)
N20.7596 (5)0.1576 (3)0.54753 (19)0.0371 (9)
N30.5988 (6)0.2086 (3)0.6073 (2)0.0573 (13)
H3A0.56700.23390.64000.069*
N40.8396 (5)0.3347 (3)0.3553 (2)0.0426 (10)
N50.6000 (5)−0.0116 (3)0.2470 (2)0.0445 (10)
C10.5748 (6)0.0876 (3)0.4473 (2)0.0372 (11)
H1A0.47040.10490.41580.045*
H1B0.57330.02250.45530.045*
C20.6000 (6)0.1372 (3)0.5129 (3)0.0374 (12)
C30.4990 (7)0.1690 (4)0.5504 (3)0.0496 (14)
H3B0.38490.16450.53920.060*
C40.7537 (7)0.2019 (4)0.6041 (3)0.0517 (14)
H4A0.84460.22500.63680.062*
C50.6910 (6)0.2056 (3)0.3885 (3)0.0395 (12)
H5A0.63330.24230.41460.047*
H5B0.62480.20370.34100.047*
C60.8551 (6)0.2485 (3)0.3918 (3)0.0489 (14)
H6A0.91440.25820.43960.059*
H6B0.91930.20690.37200.059*
C70.8081 (7)0.4161 (4)0.3837 (3)0.0510 (14)
C80.8283 (6)0.4883 (3)0.3344 (2)0.0424 (12)
C90.8152 (8)0.5819 (4)0.3369 (3)0.0586 (16)
H9A0.78580.61070.37300.070*
C100.8480 (8)0.6310 (4)0.2832 (3)0.0598 (16)
H10A0.84190.69420.28350.072*
C110.8889 (7)0.5882 (4)0.2298 (3)0.0557 (15)
H11A0.90830.62320.19430.067*
C120.9023 (7)0.4950 (4)0.2270 (3)0.0484 (13)
H12A0.93060.46640.19060.058*
C130.8722 (6)0.4459 (3)0.2804 (3)0.0410 (12)
C140.8824 (6)0.3467 (3)0.2942 (3)0.0412 (12)
C150.7243 (6)0.0443 (3)0.3632 (2)0.0383 (12)
H15A0.7659−0.01260.38570.046*
H15B0.80460.06650.34050.046*
C160.5645 (6)0.0249 (4)0.3085 (3)0.0477 (13)
H16A0.4994−0.01860.32610.057*
H16B0.50130.08060.29710.057*
C170.6355 (7)0.0435 (4)0.1965 (3)0.0555 (15)
C180.6740 (7)−0.0193 (4)0.1452 (3)0.0559 (15)
C190.7175 (9)−0.0007 (5)0.0860 (3)0.083 (2)
H19A0.72530.05870.07110.099*
C200.7496 (10)−0.0755 (7)0.0492 (3)0.089 (2)
H20A0.7801−0.06590.00860.107*
C210.7373 (8)−0.1627 (6)0.0710 (4)0.075 (2)
H21A0.7602−0.21120.04540.090*
C220.6916 (7)−0.1796 (5)0.1305 (3)0.0638 (17)
H22A0.6835−0.23900.14530.077*
C230.6583 (7)−0.1073 (4)0.1675 (3)0.0506 (14)
C240.6043 (7)−0.1033 (4)0.2314 (3)0.0504 (14)
U11U22U33U12U13U23
Cu10.0370 (4)0.0344 (4)0.0361 (4)0.0013 (3)0.0159 (3)−0.0045 (3)
Cl10.0480 (8)0.0709 (11)0.0690 (10)−0.0078 (7)0.0189 (7)−0.0349 (8)
Cl20.0405 (7)0.0386 (7)0.0359 (7)0.0054 (5)0.0173 (5)0.0011 (5)
O10.145 (5)0.064 (3)0.068 (3)0.003 (3)0.067 (3)0.005 (2)
O20.099 (3)0.039 (2)0.054 (2)0.013 (2)0.031 (2)−0.0029 (19)
O30.123 (4)0.044 (3)0.076 (3)−0.005 (3)0.031 (3)0.005 (2)
O40.094 (3)0.056 (3)0.063 (3)−0.016 (2)0.029 (2)0.002 (2)
N10.040 (2)0.030 (2)0.034 (2)0.0029 (17)0.0180 (18)0.0043 (17)
N20.038 (2)0.043 (2)0.034 (2)0.0052 (19)0.0167 (19)−0.0045 (19)
N30.067 (3)0.064 (3)0.050 (3)0.016 (3)0.031 (3)−0.010 (2)
N40.055 (3)0.028 (2)0.048 (3)−0.001 (2)0.021 (2)0.008 (2)
N50.059 (3)0.039 (3)0.034 (2)−0.007 (2)0.011 (2)−0.004 (2)
C10.036 (3)0.036 (3)0.042 (3)−0.007 (2)0.014 (2)0.005 (2)
C20.044 (3)0.034 (3)0.042 (3)0.004 (2)0.024 (2)0.007 (2)
C30.049 (3)0.052 (4)0.055 (4)0.010 (3)0.025 (3)0.007 (3)
C40.058 (4)0.056 (4)0.044 (3)0.006 (3)0.018 (3)−0.011 (3)
C50.046 (3)0.036 (3)0.040 (3)0.006 (2)0.019 (2)0.005 (2)
C60.052 (3)0.036 (3)0.058 (4)0.000 (2)0.014 (3)0.016 (3)
C70.066 (4)0.046 (3)0.047 (3)0.000 (3)0.026 (3)0.009 (3)
C80.056 (3)0.034 (3)0.041 (3)0.000 (2)0.019 (3)0.002 (2)
C90.093 (5)0.035 (3)0.053 (4)−0.007 (3)0.028 (3)−0.006 (3)
C100.088 (5)0.027 (3)0.066 (4)−0.009 (3)0.023 (4)0.003 (3)
C110.074 (4)0.045 (4)0.053 (4)−0.008 (3)0.024 (3)0.015 (3)
C120.068 (4)0.042 (3)0.041 (3)−0.005 (3)0.026 (3)0.005 (3)
C130.053 (3)0.028 (3)0.043 (3)−0.006 (2)0.015 (2)0.001 (2)
C140.056 (3)0.032 (3)0.036 (3)0.000 (2)0.013 (2)0.001 (2)
C150.045 (3)0.034 (3)0.040 (3)−0.001 (2)0.018 (2)−0.006 (2)
C160.047 (3)0.053 (4)0.043 (3)0.000 (3)0.012 (2)−0.006 (3)
C170.067 (4)0.046 (4)0.048 (3)−0.001 (3)0.006 (3)0.003 (3)
C180.066 (4)0.062 (4)0.038 (3)−0.005 (3)0.011 (3)−0.004 (3)
C190.118 (6)0.080 (5)0.058 (4)−0.005 (5)0.037 (4)0.010 (4)
C200.107 (6)0.123 (7)0.044 (4)−0.010 (5)0.033 (4)−0.012 (5)
C210.066 (4)0.097 (6)0.066 (5)−0.009 (4)0.023 (4)−0.031 (4)
C220.057 (4)0.065 (4)0.063 (4)−0.007 (3)0.005 (3)−0.018 (3)
C230.051 (3)0.049 (4)0.047 (3)−0.005 (3)0.005 (3)−0.008 (3)
C240.055 (3)0.052 (4)0.041 (3)−0.009 (3)0.008 (3)−0.006 (3)
Cu1—N21.932 (4)C5—H5B0.9700
Cu1—N12.211 (4)C6—H6A0.9700
Cu1—Cl12.2431 (15)C6—H6B0.9700
Cu1—Cl2i2.2630 (12)C7—C81.493 (7)
Cu1—Cl22.7069 (13)C8—C91.382 (7)
Cl2—Cu1i2.2630 (12)C8—C131.386 (7)
O1—C71.196 (6)C9—C101.389 (8)
O2—C141.192 (6)C9—H9A0.9300
O3—C171.198 (6)C10—C111.368 (8)
O4—C241.202 (6)C10—H10A0.9300
N1—C11.489 (5)C11—C121.376 (7)
N1—C151.489 (5)C11—H11A0.9300
N1—C51.492 (6)C12—C131.375 (6)
N2—C41.325 (6)C12—H12A0.9300
N2—C21.373 (6)C13—C141.481 (7)
N3—C41.329 (6)C15—C161.522 (7)
N3—C31.358 (7)C15—H15A0.9700
N3—H3A0.8600C15—H15B0.9700
N4—C71.382 (7)C16—H16A0.9700
N4—C141.383 (6)C16—H16B0.9700
N4—C61.452 (6)C17—C181.485 (8)
N5—C241.385 (7)C18—C191.366 (7)
N5—C171.392 (7)C18—C231.387 (8)
N5—C161.453 (6)C19—C201.393 (10)
C1—C21.472 (7)C19—H19A0.9300
C1—H1A0.9700C20—C211.367 (10)
C1—H1B0.9700C20—H20A0.9300
C2—C31.364 (6)C21—C221.377 (8)
C3—H3B0.9300C21—H21A0.9300
C4—H4A0.9300C22—C231.368 (8)
C5—C61.506 (6)C22—H22A0.9300
C5—H5A0.9700C23—C241.479 (7)
N2—Cu1—N178.75 (15)N4—C7—C8105.7 (4)
N2—Cu1—Cl191.52 (13)C9—C8—C13121.1 (5)
N1—Cu1—Cl1150.69 (11)C9—C8—C7131.1 (5)
N2—Cu1—Cl2i173.87 (13)C13—C8—C7107.8 (5)
N1—Cu1—Cl2i95.78 (10)C8—C9—C10116.9 (5)
Cl1—Cu1—Cl2i94.61 (5)C8—C9—H9A121.5
N2—Cu1—Cl290.81 (12)C10—C9—H9A121.5
N1—Cu1—Cl294.67 (10)C11—C10—C9121.3 (5)
Cl1—Cu1—Cl2113.23 (6)C11—C10—H10A119.3
Cl2i—Cu1—Cl286.86 (4)C9—C10—H10A119.3
Cu1i—Cl2—Cu193.14 (4)C10—C11—C12122.0 (5)
C1—N1—C15110.8 (4)C10—C11—H11A119.0
C1—N1—C5110.3 (3)C12—C11—H11A119.0
C15—N1—C5110.8 (3)C13—C12—C11117.1 (5)
C1—N1—Cu1103.7 (3)C13—C12—H12A121.5
C15—N1—Cu1114.5 (3)C11—C12—H12A121.5
C5—N1—Cu1106.4 (3)C12—C13—C8121.5 (5)
C4—N2—C2106.6 (4)C12—C13—C14130.5 (5)
C4—N2—Cu1136.2 (4)C8—C13—C14108.0 (4)
C2—N2—Cu1117.1 (3)O2—C14—N4124.4 (5)
C4—N3—C3108.8 (4)O2—C14—C13129.5 (5)
C4—N3—H3A125.6N4—C14—C13106.1 (4)
C3—N3—H3A125.6N1—C15—C16115.7 (4)
C7—N4—C14112.5 (4)N1—C15—H15A108.4
C7—N4—C6123.2 (4)C16—C15—H15A108.4
C14—N4—C6123.5 (4)N1—C15—H15B108.4
C24—N5—C17112.1 (4)C16—C15—H15B108.4
C24—N5—C16125.1 (4)H15A—C15—H15B107.4
C17—N5—C16122.8 (5)N5—C16—C15110.0 (4)
C2—C1—N1108.0 (4)N5—C16—H16A109.7
C2—C1—H1A110.1C15—C16—H16A109.7
N1—C1—H1A110.1N5—C16—H16B109.7
C2—C1—H1B110.1C15—C16—H16B109.7
N1—C1—H1B110.1H16A—C16—H16B108.2
H1A—C1—H1B108.4O3—C17—N5123.4 (6)
C3—C2—N2108.4 (5)O3—C17—C18130.4 (6)
C3—C2—C1134.8 (5)N5—C17—C18106.1 (5)
N2—C2—C1116.8 (4)C19—C18—C23122.7 (6)
N3—C3—C2106.1 (5)C19—C18—C17130.1 (6)
N3—C3—H3B127.0C23—C18—C17107.2 (5)
C2—C3—H3B127.0C18—C19—C20116.3 (7)
N2—C4—N3110.1 (5)C18—C19—H19A121.8
N2—C4—H4A125.0C20—C19—H19A121.8
N3—C4—H4A125.0C21—C20—C19121.7 (6)
N1—C5—C6110.9 (4)C21—C20—H20A119.2
N1—C5—H5A109.5C19—C20—H20A119.2
C6—C5—H5A109.5C20—C21—C22120.8 (7)
N1—C5—H5B109.5C20—C21—H21A119.6
C6—C5—H5B109.5C22—C21—H21A119.6
H5A—C5—H5B108.0C23—C22—C21118.7 (7)
N4—C6—C5112.7 (4)C23—C22—H22A120.7
N4—C6—H6A109.0C21—C22—H22A120.7
C5—C6—H6A109.0C22—C23—C18119.8 (5)
N4—C6—H6B109.0C22—C23—C24131.4 (6)
C5—C6—H6B109.0C18—C23—C24108.8 (5)
H6A—C6—H6B107.8O4—C24—N5125.6 (5)
O1—C7—N4125.1 (5)O4—C24—C23128.8 (5)
O1—C7—C8129.2 (5)N5—C24—C23105.6 (5)
D—H···AD—HH···AD···AD—H···A
N3—H3A···O3ii0.862.373.022 (6)133
C3—H3B···Cl1iii0.932.653.445 (6)144
C4—H4A···O2ii0.932.453.131 (7)131
C6—H6B···O20.972.512.870 (7)102
C15—H15A···Cl1i0.972.823.769 (5)165
C20—H20A···O1iv0.932.533.218 (9)131
Table 1

Selected bond lengths (Å)

Cu1—N21.932 (4)
Cu1—N12.211 (4)
Cu1—Cl12.2431 (15)
Cu1—Cl2i 2.2630 (12)
Cu1—Cl22.7069 (13)

Symmetry code: (i) .

Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N3—H3A⋯O3ii 0.862.373.022 (6)133
C3—H3B⋯Cl1iii 0.932.653.445 (6)144
C4—H4A⋯O2ii 0.932.453.131 (7)131
C6—H6B⋯O20.972.512.870 (7)102
C15—H15A⋯Cl1i 0.972.823.769 (5)165
C20—H20A⋯O1iv 0.932.533.218 (9)131

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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4.  Di-μ-chlorido-bis-[chlorido(N,N-di-methyl-ethylenediamine-κN,N')zinc(II)].

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Authors:  Gene-Hsiang Lee; Hsiao-Fen Wang; Kuang-Hway Yih; Shou-Ling Huang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-12-24

2.  Crystal structure of a chloride-bridged copper(II) dimer: piperazine-1,4-dium bis-(di-μ-chlorido-bis[(4-carboxypyridine-2-carboxyl-ato-κ2N,O2)chlorido-cuprate(II)].

Authors:  Bassey Enyi Inah; Ayi Anyama Ayi; Amit Adhikary
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2017-01-27

3.  Di-μ-chlorido-bis-[(2,2'-bipyridine-5,5'-dicarb-oxy-lic acid-κ(2)N,N')chloridocopper(II)] dimethyl-formamide tetra-solvate.

Authors:  Sigurd Oien; David Stephen Wragg; Karl Petter Lillerud; Mats Tilset
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-01-04

4.  Crystal structure of 2,2'-({[2-(trityl-sulfan-yl)benz-yl]azane-diyl}bis-(ethane-2,1-di-yl))bis-(isoindoline-1,3-dione).

Authors:  Ulrich Flörke; Adam Neuba; Jochen Ortmeyer; Gerald Henkel
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-08-01
  4 in total

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