Literature DB >> 21578517

4,4-Dimethyl-2-tosyl-1,2,3,3a,4,11b-hexa-hydro-11H-pyrrolo[3,4-c]pyrano[5,6-c]chromen-11-one 0.125-hydrate.

K Chinnakali, D Sudha, M Jayagobi, R Raghunathan, Hoong-Kun Fun.   

Abstract

In the title compound, C(23)H(23)NO(5)S·0.125H(2)O, the pyrrolidine ring has a twist conformation and the dihydro-pyran ring adopts a half-chair conformation; the two rings are cis-fused. The mol-ecule adopts a folded conformation. The sulfonyl-bound phenyl ring and the pyran ring of the coumarin ring system are stacked over one another, with a centroid-centroid distance of 3.7470 (7) Å; the dihedral angle between the two rings is 18.93 (2)°. An intra-molecular C-H⋯O hydrogen bond is observed. The solvent water mol-ecule, lying on a twofold rotation axis, is only partially occupied with an occupancy of 0.125 (relative occupancy with respect to the main molecule) and is involved in O-H⋯O and C-H⋯O hydrogen bonding.

Entities:  

Year:  2009        PMID: 21578517      PMCID: PMC2971430          DOI: 10.1107/S1600536809044730

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of pyran­ocoumarin compounds, see: Kawaii et al. (2001 ▶); Hossain et al. (1996 ▶); Goel et al. (1997 ▶); Su et al. (2009 ▶); Xu et al. (2006 ▶). For asymmetry parameters, see: Duax et al. (1976 ▶).

Experimental

Crystal data

C23H23NO5S·0.125H2O M = 427.74 Tetragonal, a = 15.1932 (2) Å c = 17.7180 (3) Å V = 4089.91 (10) Å3 Z = 8 Mo Kα radiation μ = 0.20 mm−1 T = 100 K 0.50 × 0.44 × 0.13 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.845, T max = 0.976 97892 measured reflections 6004 independent reflections 5114 reflections with I > 2σ(I) R int = 0.058

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.109 S = 1.05 6004 reflections 282 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.44 e Å−3 Δρmin = −0.36 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809044730/bt5116sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809044730/bt5116Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C23H23NO5S·0.125H2ODx = 1.389 Mg m3
Mr = 427.74Mo Kα radiation, λ = 0.71073 Å
Tetragonal, P42/nCell parameters from 9971 reflections
Hall symbol: -P 4bcθ = 2.2–29.7°
a = 15.1932 (2) ŵ = 0.20 mm1
c = 17.7180 (3) ÅT = 100 K
V = 4089.91 (10) Å3Block, colourless
Z = 80.50 × 0.44 × 0.13 mm
F(000) = 1802
Bruker SMART APEXII CCD area-detector diffractometer6004 independent reflections
Radiation source: fine-focus sealed tube5114 reflections with I > 2σ(I)
graphiteRint = 0.058
φ and ω scansθmax = 30.1°, θmin = 1.8°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −19→21
Tmin = 0.845, Tmax = 0.976k = −19→21
97892 measured reflectionsl = −24→25
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.039Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.109H atoms treated by a mixture of independent and constrained refinement
S = 1.05w = 1/[σ2(Fo2) + (0.0592P)2 + 1.3394P] where P = (Fo2 + 2Fc2)/3
6004 reflections(Δ/σ)max = 0.001
282 parametersΔρmax = 0.44 e Å3
1 restraintΔρmin = −0.36 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
S10.581635 (19)0.56278 (2)0.395952 (15)0.02140 (8)
O10.62409 (6)0.47960 (7)0.40829 (5)0.0292 (2)
O20.61326 (6)0.63995 (7)0.43408 (5)0.0313 (2)
O30.30418 (6)0.47680 (5)0.26574 (4)0.01818 (16)
O40.35320 (6)0.73448 (6)0.20657 (5)0.02448 (19)
O50.35668 (6)0.77642 (6)0.32563 (5)0.02305 (18)
N10.47990 (6)0.55091 (7)0.42058 (5)0.01870 (19)
C10.43048 (8)0.47357 (8)0.39346 (6)0.0190 (2)
H1A0.44160.42260.42500.023*
H1B0.44600.45950.34180.023*
C20.33383 (7)0.50282 (7)0.39921 (6)0.0168 (2)
H20.31250.49050.45030.020*
C30.33722 (7)0.60314 (7)0.38784 (6)0.0165 (2)
H30.28650.63120.41200.020*
C40.42234 (8)0.62880 (8)0.42864 (6)0.0191 (2)
H4A0.44890.68010.40540.023*
H4B0.41110.64140.48140.023*
C50.27372 (8)0.45698 (7)0.34279 (6)0.0180 (2)
C60.32304 (7)0.56163 (7)0.25100 (6)0.0161 (2)
C70.33841 (7)0.62372 (7)0.30463 (6)0.0163 (2)
C80.58331 (7)0.58347 (8)0.29825 (6)0.0191 (2)
C90.56995 (11)0.66848 (9)0.27189 (7)0.0313 (3)
H90.56340.71500.30560.038*
C100.56654 (12)0.68315 (9)0.19508 (8)0.0387 (4)
H100.55640.73990.17750.046*
C110.57777 (10)0.61547 (9)0.14336 (7)0.0284 (3)
C120.59130 (8)0.53099 (8)0.17059 (7)0.0211 (2)
H120.59890.48480.13670.025*
C130.59373 (8)0.51415 (8)0.24766 (6)0.0195 (2)
H130.60220.45710.26530.023*
C140.57659 (14)0.63433 (12)0.05996 (8)0.0496 (5)
H14A0.55110.58530.03370.074*
H14B0.63570.64350.04250.074*
H14C0.54220.68620.05050.074*
C150.17906 (8)0.48882 (8)0.34908 (7)0.0229 (2)
H15A0.14320.45820.31300.034*
H15B0.17680.55090.33910.034*
H15C0.15750.47750.39910.034*
C160.27884 (9)0.35747 (8)0.34841 (7)0.0244 (2)
H16A0.24000.33150.31190.037*
H16B0.26170.33930.39820.037*
H16C0.33810.33860.33870.037*
C170.32585 (7)0.58344 (8)0.17165 (6)0.0180 (2)
C180.31166 (8)0.52190 (8)0.11395 (6)0.0211 (2)
H180.30070.46330.12580.025*
C190.31403 (9)0.54850 (9)0.03950 (7)0.0252 (3)
H190.30410.50780.00130.030*
C200.33121 (10)0.63606 (10)0.02134 (7)0.0307 (3)
H200.33270.6532−0.02900.037*
C210.34609 (10)0.69774 (9)0.07730 (7)0.0307 (3)
H210.35840.75600.06510.037*
C220.34229 (8)0.67083 (8)0.15238 (6)0.0223 (2)
C230.35020 (8)0.71478 (8)0.28241 (6)0.0190 (2)
O1W0.75000.75000.4887 (3)0.0379 (14)0.25
H1W10.714 (5)0.723 (5)0.463 (4)0.057*0.25
U11U22U33U12U13U23
S10.01678 (14)0.03109 (17)0.01633 (13)0.00006 (10)−0.00130 (9)0.00123 (10)
O10.0219 (4)0.0431 (6)0.0225 (4)0.0104 (4)−0.0003 (3)0.0089 (4)
O20.0238 (5)0.0462 (6)0.0241 (4)−0.0101 (4)−0.0015 (3)−0.0076 (4)
O30.0253 (4)0.0136 (4)0.0156 (3)−0.0018 (3)0.0003 (3)0.0007 (3)
O40.0349 (5)0.0179 (4)0.0207 (4)−0.0063 (3)−0.0050 (3)0.0041 (3)
O50.0261 (4)0.0163 (4)0.0267 (4)−0.0019 (3)−0.0023 (3)−0.0015 (3)
N10.0163 (4)0.0216 (5)0.0182 (4)0.0010 (4)−0.0001 (3)0.0003 (3)
C10.0199 (5)0.0190 (5)0.0181 (5)0.0011 (4)−0.0008 (4)0.0009 (4)
C20.0188 (5)0.0164 (5)0.0152 (4)0.0000 (4)0.0006 (4)0.0013 (4)
C30.0178 (5)0.0157 (5)0.0161 (4)0.0005 (4)0.0008 (4)−0.0007 (4)
C40.0208 (5)0.0195 (5)0.0169 (5)0.0003 (4)−0.0013 (4)−0.0022 (4)
C50.0214 (5)0.0162 (5)0.0164 (5)−0.0020 (4)0.0005 (4)0.0027 (4)
C60.0161 (5)0.0148 (5)0.0173 (5)0.0006 (4)−0.0008 (4)0.0018 (4)
C70.0167 (5)0.0152 (5)0.0171 (5)0.0003 (4)−0.0011 (4)0.0013 (4)
C80.0175 (5)0.0223 (5)0.0175 (5)−0.0005 (4)0.0009 (4)0.0016 (4)
C90.0501 (9)0.0184 (6)0.0253 (6)0.0008 (5)0.0106 (6)−0.0021 (5)
C100.0695 (11)0.0195 (6)0.0272 (6)0.0099 (6)0.0134 (7)0.0065 (5)
C110.0404 (8)0.0249 (6)0.0200 (5)0.0089 (5)0.0051 (5)0.0053 (5)
C120.0240 (6)0.0204 (5)0.0190 (5)0.0016 (4)0.0005 (4)−0.0004 (4)
C130.0201 (5)0.0183 (5)0.0201 (5)0.0014 (4)0.0004 (4)0.0027 (4)
C140.0861 (14)0.0409 (9)0.0217 (6)0.0300 (9)0.0102 (7)0.0097 (6)
C150.0194 (5)0.0235 (6)0.0256 (6)−0.0029 (4)−0.0004 (4)0.0019 (4)
C160.0322 (7)0.0161 (5)0.0250 (6)−0.0025 (4)−0.0019 (5)0.0029 (4)
C170.0184 (5)0.0194 (5)0.0162 (5)−0.0007 (4)−0.0012 (4)0.0021 (4)
C180.0237 (6)0.0209 (5)0.0188 (5)0.0017 (4)−0.0024 (4)0.0008 (4)
C190.0290 (6)0.0290 (6)0.0177 (5)0.0018 (5)−0.0036 (4)−0.0004 (4)
C200.0389 (8)0.0351 (7)0.0180 (5)−0.0040 (6)−0.0036 (5)0.0072 (5)
C210.0424 (8)0.0273 (7)0.0225 (6)−0.0088 (5)−0.0046 (5)0.0090 (5)
C220.0266 (6)0.0207 (6)0.0195 (5)−0.0039 (4)−0.0039 (4)0.0030 (4)
C230.0188 (5)0.0173 (5)0.0208 (5)−0.0010 (4)−0.0023 (4)0.0027 (4)
O1W0.055 (4)0.037 (3)0.022 (2)−0.029 (3)0.0000.000
S1—O11.4355 (10)C9—C101.3799 (19)
S1—O21.4359 (10)C9—H90.93
S1—N11.6161 (10)C10—C111.3878 (19)
S1—C81.7597 (12)C10—H100.93
O3—C61.3459 (13)C11—C121.3865 (17)
O3—C51.4727 (13)C11—C141.5054 (18)
O4—C221.3728 (14)C12—C131.3897 (15)
O4—C231.3774 (14)C12—H120.93
O5—C231.2137 (14)C13—H130.93
N1—C11.4749 (15)C14—H14A0.96
N1—C41.4784 (15)C14—H14B0.96
C1—C21.5376 (16)C14—H14C0.96
C1—H1A0.97C15—H15A0.96
C1—H1B0.97C15—H15B0.96
C2—C51.5225 (15)C15—H15C0.96
C2—C31.5382 (15)C16—H16A0.96
C2—H20.98C16—H16B0.96
C3—C71.5072 (14)C16—H16C0.96
C3—C41.5320 (16)C17—C221.3935 (16)
C3—H30.98C17—C181.4021 (16)
C4—H4A0.97C18—C191.3800 (16)
C4—H4B0.97C18—H180.93
C5—C161.5172 (16)C19—C201.3934 (19)
C5—C151.5215 (17)C19—H190.93
C6—C71.3592 (15)C20—C211.383 (2)
C6—C171.4449 (14)C20—H200.93
C7—C231.4497 (15)C21—C221.3929 (16)
C8—C91.3883 (17)C21—H210.93
C8—C131.3920 (16)O1W—H1W10.83 (2)
O1—S1—O2119.79 (6)C8—C9—H9120.4
O1—S1—N1106.89 (6)C9—C10—C11121.80 (12)
O2—S1—N1106.50 (6)C9—C10—H10119.1
O1—S1—C8107.49 (6)C11—C10—H10119.1
O2—S1—C8108.18 (6)C12—C11—C10118.31 (12)
N1—S1—C8107.42 (5)C12—C11—C14121.30 (12)
C6—O3—C5116.27 (8)C10—C11—C14120.38 (12)
C22—O4—C23121.68 (9)C11—C12—C13121.08 (11)
C1—N1—C4111.59 (9)C11—C12—H12119.5
C1—N1—S1119.20 (8)C13—C12—H12119.5
C4—N1—S1120.17 (8)C12—C13—C8119.36 (11)
N1—C1—C2103.55 (9)C12—C13—H13120.3
N1—C1—H1A111.1C8—C13—H13120.3
C2—C1—H1A111.1C11—C14—H14A109.5
N1—C1—H1B111.1C11—C14—H14B109.5
C2—C1—H1B111.1H14A—C14—H14B109.5
H1A—C1—H1B109.0C11—C14—H14C109.5
C5—C2—C1113.40 (9)H14A—C14—H14C109.5
C5—C2—C3112.79 (9)H14B—C14—H14C109.5
C1—C2—C3104.22 (9)C5—C15—H15A109.5
C5—C2—H2108.7C5—C15—H15B109.5
C1—C2—H2108.7H15A—C15—H15B109.5
C3—C2—H2108.7C5—C15—H15C109.5
C7—C3—C4113.50 (9)H15A—C15—H15C109.5
C7—C3—C2109.51 (9)H15B—C15—H15C109.5
C4—C3—C2102.63 (9)C5—C16—H16A109.5
C7—C3—H3110.3C5—C16—H16B109.5
C4—C3—H3110.3H16A—C16—H16B109.5
C2—C3—H3110.3C5—C16—H16C109.5
N1—C4—C3104.48 (9)H16A—C16—H16C109.5
N1—C4—H4A110.9H16B—C16—H16C109.5
C3—C4—H4A110.9C22—C17—C18118.96 (10)
N1—C4—H4B110.9C22—C17—C6117.53 (10)
C3—C4—H4B110.9C18—C17—C6123.50 (10)
H4A—C4—H4B108.9C19—C18—C17119.85 (11)
O3—C5—C16104.38 (9)C19—C18—H18120.1
O3—C5—C15107.45 (9)C17—C18—H18120.1
C16—C5—C15111.13 (10)C18—C19—C20120.34 (12)
O3—C5—C2109.06 (9)C18—C19—H19119.8
C16—C5—C2112.46 (9)C20—C19—H19119.8
C15—C5—C2111.93 (9)C21—C20—C19120.80 (11)
O3—C6—C7124.44 (10)C21—C20—H20119.6
O3—C6—C17114.50 (9)C19—C20—H20119.6
C7—C6—C17121.06 (10)C20—C21—C22118.62 (12)
C6—C7—C23119.59 (10)C20—C21—H21120.7
C6—C7—C3122.54 (10)C22—C21—H21120.7
C23—C7—C3117.72 (9)O4—C22—C21117.14 (11)
C9—C8—C13120.26 (11)O4—C22—C17121.43 (10)
C9—C8—S1119.68 (9)C21—C22—C17121.41 (11)
C13—C8—S1119.99 (9)O5—C23—O4116.44 (10)
C10—C9—C8119.17 (12)O5—C23—C7125.11 (11)
C10—C9—H9120.4O4—C23—C7118.45 (10)
O1—S1—N1—C1−47.47 (10)O2—S1—C8—C9−31.08 (12)
O2—S1—N1—C1−176.63 (8)N1—S1—C8—C983.53 (12)
C8—S1—N1—C167.65 (10)O1—S1—C8—C1321.34 (11)
O1—S1—N1—C4168.19 (8)O2—S1—C8—C13152.02 (10)
O2—S1—N1—C439.03 (10)N1—S1—C8—C13−93.37 (10)
C8—S1—N1—C4−76.69 (9)C13—C8—C9—C100.5 (2)
C4—N1—C1—C2−10.44 (11)S1—C8—C9—C10−176.44 (12)
S1—N1—C1—C2−157.62 (7)C8—C9—C10—C11−1.3 (3)
N1—C1—C2—C5152.39 (9)C9—C10—C11—C121.1 (3)
N1—C1—C2—C329.36 (10)C9—C10—C11—C14−178.00 (17)
C5—C2—C3—C7−39.60 (12)C10—C11—C12—C13−0.1 (2)
C1—C2—C3—C783.82 (10)C14—C11—C12—C13178.96 (14)
C5—C2—C3—C4−160.46 (9)C11—C12—C13—C8−0.66 (19)
C1—C2—C3—C4−37.03 (10)C9—C8—C13—C120.48 (18)
C1—N1—C4—C3−12.70 (12)S1—C8—C13—C12177.37 (9)
S1—N1—C4—C3134.11 (8)O3—C6—C17—C22178.02 (10)
C7—C3—C4—N1−87.73 (11)C7—C6—C17—C22−1.85 (16)
C2—C3—C4—N130.35 (10)O3—C6—C17—C18−0.97 (16)
C6—O3—C5—C16−166.93 (9)C7—C6—C17—C18179.16 (11)
C6—O3—C5—C1574.98 (11)C22—C17—C18—C19−0.09 (18)
C6—O3—C5—C2−46.55 (12)C6—C17—C18—C19178.89 (11)
C1—C2—C5—O3−60.12 (12)C17—C18—C19—C200.55 (19)
C3—C2—C5—O358.06 (12)C18—C19—C20—C210.0 (2)
C1—C2—C5—C1655.17 (12)C19—C20—C21—C22−0.9 (2)
C3—C2—C5—C16173.35 (9)C23—O4—C22—C21179.72 (12)
C1—C2—C5—C15−178.89 (9)C23—O4—C22—C171.34 (18)
C3—C2—C5—C15−60.71 (12)C20—C21—C22—O4−176.96 (13)
C5—O3—C6—C718.19 (15)C20—C21—C22—C171.4 (2)
C5—O3—C6—C17−161.67 (9)C18—C17—C22—O4177.39 (11)
O3—C6—C7—C23−174.40 (10)C6—C17—C22—O4−1.65 (17)
C17—C6—C7—C235.45 (16)C18—C17—C22—C21−0.91 (19)
O3—C6—C7—C30.98 (17)C6—C17—C22—C21−179.95 (12)
C17—C6—C7—C3−179.17 (10)C22—O4—C23—O5−176.80 (11)
C4—C3—C7—C6124.43 (11)C22—O4—C23—C72.28 (16)
C2—C3—C7—C610.40 (15)C6—C7—C23—O5173.33 (11)
C4—C3—C7—C23−60.11 (13)C3—C7—C23—O5−2.27 (17)
C2—C3—C7—C23−174.13 (10)C6—C7—C23—O4−5.67 (16)
O1—S1—C8—C9−161.76 (11)C3—C7—C23—O4178.73 (10)
D—H···AD—HH···AD···AD—H···A
C4—H4A···O50.972.473.0588 (15)119
O1W—H1W1···O20.83 (2)2.05 (8)2.837 (2)161 (8)
C16—H16B···O1Wi0.962.433.345 (5)160
C16—H16B···O1Wii0.962.433.345 (5)160
C14—H14B···O1Wiii0.962.443.282 (2)147
C14—H14B···O1Wiv0.962.443.282 (2)147
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C4—H4A⋯O50.972.473.0588 (15)119
O1W—H1W1⋯O20.83 (2)2.05 (8)2.837 (2)161 (8)
C16—H16B⋯O1Wi0.962.433.345 (5)160
C16—H16B⋯O1Wii0.962.433.345 (5)160
C14—H14B⋯O1Wiii0.962.443.282 (2)147
C14—H14B⋯O1Wiv0.962.443.282 (2)147

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  7 in total

1.  Pyranocoumarin, a novel anti-TB pharmacophore: synthesis and biological evaluation against Mycobacterium tuberculosis.

Authors:  Ze-Qi Xu; Krzysztof Pupek; William J Suling; Livia Enache; Michael T Flavin
Journal:  Bioorg Med Chem       Date:  2006-03-02       Impact factor: 3.641

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Antiproliferative effect of isopentenylated coumarins on several cancer cell lines.

Authors:  S Kawaii; Y Tomono; K Ogawa; M Sugiura; M Yano; Y Yoshizawa; C Ito; H Furukawa
Journal:  Anticancer Res       Date:  2001 May-Jun       Impact factor: 2.480

4.  Antiulcer activity of naturally occurring pyrano-coumarin and isocoumarins and their effect on prostanoid synthesis using human colonic mucosa.

Authors:  R K Goel; R N Maiti; M Manickam; A B Ray
Journal:  Indian J Exp Biol       Date:  1997-10       Impact factor: 0.818

5.  Anti-HBV and cytotoxic activities of pyranocoumarin derivatives.

Authors:  Chung-Ren Su; Sheau Farn Yeh; Chih Miem Liu; Amooru G Damu; Tsung-Hsiao Kuo; Po-Cheng Chiang; Kenneth F Bastow; Kuo-Hsiung Lee; Tian-Shung Wu
Journal:  Bioorg Med Chem       Date:  2008-12-13       Impact factor: 3.641

6.  A new series of coumarin derivatives having monoamine oxidase inhibitory activity from Monascus anka.

Authors:  C F Hossain; E Okuyama; M Yamazaki
Journal:  Chem Pharm Bull (Tokyo)       Date:  1996-08       Impact factor: 1.645

7.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  7 in total

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