Literature DB >> 21578471

(E)-3-(2,6-Dichloro-benzyl-idene)indolin-2-one.

Hongming Zhang1, Haribabu Ankati, Ed Biehl.   

Abstract

There are two independent mol-ecules in the asymmetric unit of the title compound, C(15)H(9)Cl(2)NO. The dihedral angles between the oxindolyl and dichloro-phenyl rings are essentially identical for the two independent mol-ecules [63.4 (1) and 63.2 (1)°]. Dimers linked by amide-carbonyl N-H⋯O hydrogen bonds are formed from each symmetry-independent mol-ecule and the respective symmetry equivalent created by inversion.

Entities:  

Year:  2009        PMID: 21578471      PMCID: PMC2971081          DOI: 10.1107/S1600536809043487

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the syntheses and structures of related compounds, see: Ankati et al. (2009 ▶); Zhang et al. (2008 ▶, 2009a ▶,b ▶,c ▶). For the pharmacological properties of 3-(substituted-benzyl­idene)-1,3-dihydro-indolin derivatives, see: Andreani et al. (2006 ▶); Balderamos et al. (2008 ▶); Johnson et al. (2005 ▶); Olgen et al. (2005 ▶, 2007 ▶); Sun et al. (2003 ▶)

Experimental

Crystal data

C15H9Cl2NO M = 290.13 Triclinic, a = 8.3908 (5) Å b = 12.6079 (7) Å c = 12.7635 (7) Å α = 99.334 (1)° β = 91.188 (1)° γ = 96.338 (1)° V = 1323.2 (1) Å3 Z = 4 Mo Kα radiation μ = 0.48 mm−1 T = 296 K 0.35 × 0.17 × 0.08 mm

Data collection

Bruker APEX diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.849, T max = 0.964 16946 measured reflections 6459 independent reflections 4669 reflections with I > 2σ(I) R int = 0.024

Refinement

R[F 2 > 2σ(F 2)] = 0.052 wR(F 2) = 0.134 S = 1.03 6459 reflections 343 parameters H-atom parameters constrained Δρmax = 0.33 e Å−3 Δρmin = −0.23 e Å−3 Data collection: SMART (Bruker, 1997 ▶); cell refinement: SAINT (Bruker, 1997 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL and publCIF (Westrip, 2009 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809043487/im2152sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809043487/im2152Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H9Cl2NOZ = 4
Mr = 290.13F(000) = 592
Triclinic, P1Dx = 1.456 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.3908 (5) ÅCell parameters from 6257 reflections
b = 12.6079 (7) Åθ = 2.8–27.9°
c = 12.7635 (7) ŵ = 0.48 mm1
α = 99.334 (1)°T = 296 K
β = 91.188 (1)°Plates, orange
γ = 96.338 (1)°0.35 × 0.17 × 0.08 mm
V = 1323.2 (1) Å3
Bruker APEX diffractometer6459 independent reflections
Radiation source: fine-focus sealed tube4669 reflections with I > 2σ(I)
graphiteRint = 0.024
Detector resolution: 83.33 pixels mm-1θmax = 28.3°, θmin = 1.6°
φ and ω scansh = −11→11
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)k = −16→16
Tmin = 0.849, Tmax = 0.964l = −16→16
16946 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.052Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.134H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.0619P)2 + 0.2428P] where P = (Fo2 + 2Fc2)/3
6459 reflections(Δ/σ)max < 0.001
343 parametersΔρmax = 0.33 e Å3
0 restraintsΔρmin = −0.23 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.8867 (2)0.59180 (14)0.44745 (13)0.0561 (4)
H10.91440.58420.51080.067*
C20.9182 (3)0.52439 (18)0.35853 (16)0.0548 (5)
O20.9914 (2)0.44512 (13)0.35421 (12)0.0729 (5)
C30.8476 (2)0.56692 (16)0.26602 (15)0.0480 (5)
C40.6896 (3)0.73604 (17)0.27271 (17)0.0537 (5)
H40.66770.72850.20000.064*
C50.6374 (3)0.82040 (18)0.3414 (2)0.0609 (6)
H50.58000.86980.31460.073*
C60.6698 (3)0.83215 (18)0.44947 (19)0.0613 (6)
H60.63430.88980.49440.074*
C70.7538 (3)0.76009 (18)0.49217 (17)0.0575 (5)
H70.77600.76840.56490.069*
C80.8033 (2)0.67554 (16)0.42338 (16)0.0487 (5)
C90.7750 (2)0.66252 (16)0.31353 (15)0.0461 (4)
C100.8627 (3)0.51431 (17)0.16770 (16)0.0520 (5)
H100.91520.45260.16360.062*
C110.8090 (2)0.53923 (16)0.06520 (15)0.0478 (5)
C120.8584 (2)0.63401 (17)0.02580 (16)0.0511 (5)
Cl120.99044 (8)0.73448 (5)0.10073 (5)0.07059 (19)
C130.8105 (3)0.6502 (2)−0.07446 (18)0.0665 (6)
H130.84410.7148−0.09790.080*
C140.7137 (3)0.5705 (3)−0.13847 (19)0.0764 (8)
H140.68180.5810−0.20590.092*
C150.6628 (3)0.4751 (2)−0.10437 (19)0.0747 (7)
H150.59650.4211−0.14820.090*
C160.7111 (3)0.46028 (18)−0.00474 (17)0.0570 (5)
Cl160.64687 (9)0.33919 (5)0.03774 (6)0.0858 (2)
N210.6215 (2)0.38621 (13)0.51019 (13)0.0534 (4)
H210.61460.44470.55430.064*
C220.5593 (3)0.36652 (16)0.40938 (16)0.0513 (5)
O220.4820 (2)0.42554 (12)0.36706 (12)0.0687 (5)
C230.6022 (2)0.25727 (15)0.36049 (15)0.0461 (4)
C240.7577 (3)0.12452 (17)0.44962 (18)0.0558 (5)
H240.75470.07040.39040.067*
C250.8278 (3)0.1109 (2)0.5444 (2)0.0666 (6)
H250.87200.04730.54910.080*
C260.8328 (3)0.1911 (2)0.6324 (2)0.0684 (6)
H260.88080.18050.69570.082*
C270.7682 (3)0.28678 (19)0.62897 (17)0.0602 (6)
H270.77170.34050.68850.072*
C280.6985 (2)0.29923 (16)0.53382 (16)0.0491 (5)
C290.6920 (2)0.21915 (15)0.44319 (15)0.0461 (4)
C300.5491 (2)0.21366 (15)0.26238 (15)0.0481 (5)
H300.48700.25490.22760.058*
C310.5768 (2)0.10769 (15)0.20232 (14)0.0461 (4)
C320.4491 (3)0.02878 (16)0.16894 (16)0.0518 (5)
Cl320.25656 (7)0.05641 (5)0.20230 (6)0.0764 (2)
C330.4683 (3)−0.07053 (18)0.10949 (18)0.0655 (6)
H330.3801−0.12180.08900.079*
C340.6194 (4)−0.0920 (2)0.08132 (18)0.0710 (7)
H340.6337−0.15870.04150.085*
C350.7498 (3)−0.0170 (2)0.11093 (19)0.0692 (7)
H350.8519−0.03220.09100.083*
C360.7281 (3)0.08203 (18)0.17090 (17)0.0562 (5)
Cl360.89345 (8)0.17731 (6)0.20621 (6)0.0860 (2)
U11U22U33U12U13U23
N10.0754 (12)0.0573 (11)0.0375 (9)0.0106 (9)−0.0024 (8)0.0117 (8)
C20.0685 (14)0.0529 (12)0.0444 (11)0.0080 (10)−0.0019 (10)0.0122 (9)
O20.1095 (14)0.0638 (10)0.0513 (9)0.0352 (10)−0.0080 (9)0.0110 (7)
C30.0548 (11)0.0485 (11)0.0418 (10)0.0073 (9)−0.0001 (8)0.0099 (8)
C40.0568 (12)0.0541 (12)0.0520 (12)0.0080 (10)0.0024 (9)0.0128 (10)
C50.0615 (13)0.0540 (13)0.0704 (15)0.0139 (10)0.0091 (11)0.0136 (11)
C60.0663 (14)0.0517 (12)0.0647 (15)0.0066 (11)0.0176 (11)0.0042 (11)
C70.0677 (14)0.0572 (13)0.0451 (11)0.0011 (11)0.0086 (10)0.0043 (10)
C80.0525 (11)0.0490 (11)0.0443 (11)−0.0009 (9)0.0015 (8)0.0116 (9)
C90.0490 (11)0.0462 (11)0.0434 (10)0.0035 (8)0.0030 (8)0.0095 (8)
C100.0614 (13)0.0488 (11)0.0481 (11)0.0164 (10)−0.0007 (9)0.0084 (9)
C110.0518 (11)0.0534 (12)0.0386 (10)0.0184 (9)0.0017 (8)0.0004 (8)
C120.0529 (12)0.0584 (12)0.0437 (11)0.0180 (10)0.0048 (9)0.0053 (9)
Cl120.0724 (4)0.0672 (4)0.0680 (4)−0.0048 (3)0.0039 (3)0.0073 (3)
C130.0767 (16)0.0827 (17)0.0482 (13)0.0330 (14)0.0112 (11)0.0175 (12)
C140.0839 (18)0.109 (2)0.0389 (12)0.0392 (17)−0.0063 (11)0.0035 (13)
C150.0667 (15)0.097 (2)0.0513 (14)0.0177 (14)−0.0086 (11)−0.0180 (14)
C160.0572 (12)0.0594 (13)0.0507 (12)0.0134 (10)0.0053 (10)−0.0062 (10)
Cl160.0954 (5)0.0576 (4)0.0953 (5)−0.0016 (3)0.0205 (4)−0.0090 (3)
N210.0712 (11)0.0381 (9)0.0460 (10)0.0049 (8)−0.0040 (8)−0.0062 (7)
C220.0656 (13)0.0391 (10)0.0470 (11)0.0052 (9)0.0022 (9)0.0009 (8)
O220.1060 (13)0.0475 (8)0.0536 (9)0.0290 (9)−0.0097 (8)−0.0010 (7)
C230.0558 (11)0.0354 (9)0.0457 (11)0.0053 (8)0.0030 (9)0.0020 (8)
C240.0636 (13)0.0454 (11)0.0568 (13)0.0091 (10)−0.0043 (10)0.0029 (9)
C250.0698 (15)0.0580 (14)0.0739 (16)0.0116 (11)−0.0136 (12)0.0158 (12)
C260.0715 (15)0.0714 (16)0.0608 (14)0.0008 (12)−0.0205 (12)0.0145 (12)
C270.0659 (14)0.0593 (13)0.0485 (12)−0.0037 (11)−0.0092 (10)−0.0024 (10)
C280.0502 (11)0.0421 (10)0.0509 (11)−0.0026 (8)−0.0017 (9)0.0019 (8)
C290.0488 (11)0.0423 (10)0.0454 (10)0.0008 (8)−0.0010 (8)0.0046 (8)
C300.0578 (12)0.0420 (10)0.0450 (11)0.0141 (9)0.0004 (9)0.0038 (8)
C310.0609 (12)0.0435 (10)0.0346 (9)0.0146 (9)−0.0012 (8)0.0030 (8)
C320.0658 (13)0.0482 (11)0.0414 (10)0.0149 (10)−0.0065 (9)0.0028 (9)
Cl320.0616 (4)0.0763 (4)0.0860 (5)0.0078 (3)−0.0018 (3)−0.0020 (3)
C330.0947 (18)0.0446 (12)0.0544 (13)0.0137 (12)−0.0129 (12)−0.0020 (10)
C340.115 (2)0.0513 (13)0.0489 (13)0.0359 (15)−0.0008 (13)−0.0040 (10)
C350.0865 (18)0.0728 (16)0.0558 (13)0.0412 (14)0.0129 (12)0.0105 (12)
C360.0642 (13)0.0562 (12)0.0503 (12)0.0174 (10)0.0042 (10)0.0082 (10)
Cl360.0609 (4)0.0907 (5)0.1046 (6)0.0068 (3)0.0163 (4)0.0106 (4)
N1—C21.353 (3)N21—C221.353 (3)
N1—C81.399 (3)N21—C281.403 (3)
N1—H10.8600N21—H210.8600
C2—O21.224 (2)C22—O221.220 (3)
C2—C31.510 (3)C22—C231.502 (3)
C3—C101.336 (3)C23—C301.330 (3)
C3—C91.460 (3)C23—C291.457 (3)
C4—C51.381 (3)C24—C251.378 (3)
C4—C91.390 (3)C24—C291.382 (3)
C4—H40.9300C24—H240.9300
C5—C61.381 (3)C25—C261.381 (3)
C5—H50.9300C25—H250.9300
C6—C71.380 (3)C26—C271.383 (3)
C6—H60.9300C26—H260.9300
C7—C81.375 (3)C27—C281.376 (3)
C7—H70.9300C27—H270.9300
C8—C91.397 (3)C28—C291.402 (3)
C10—C111.468 (3)C30—C311.473 (3)
C10—H100.9300C30—H300.9300
C11—C121.395 (3)C31—C321.389 (3)
C11—C161.401 (3)C31—C361.395 (3)
C12—C131.386 (3)C32—C331.382 (3)
C12—Cl121.732 (2)C32—Cl321.737 (2)
C13—C141.365 (4)C33—C341.369 (4)
C13—H130.9300C33—H330.9300
C14—C151.372 (4)C34—C351.369 (4)
C14—H140.9300C34—H340.9300
C15—C161.374 (3)C35—C361.387 (3)
C15—H150.9300C35—H350.9300
C16—Cl161.736 (3)C36—Cl361.733 (2)
C2—N1—C8111.47 (17)C22—N21—C28111.48 (16)
C2—N1—H1124.3C22—N21—H21124.3
C8—N1—H1124.3C28—N21—H21124.3
O2—C2—N1126.48 (19)O22—C22—N21126.61 (19)
O2—C2—C3126.87 (19)O22—C22—C23126.87 (19)
N1—C2—C3106.64 (18)N21—C22—C23106.52 (18)
C10—C3—C9136.10 (19)C30—C23—C29133.96 (18)
C10—C3—C2118.73 (18)C30—C23—C22120.05 (18)
C9—C3—C2105.17 (17)C29—C23—C22105.84 (16)
C5—C4—C9119.3 (2)C25—C24—C29119.5 (2)
C5—C4—H4120.4C25—C24—H24120.2
C9—C4—H4120.4C29—C24—H24120.2
C4—C5—C6120.6 (2)C24—C25—C26120.4 (2)
C4—C5—H5119.7C24—C25—H25119.8
C6—C5—H5119.7C26—C25—H25119.8
C7—C6—C5121.3 (2)C25—C26—C27121.7 (2)
C7—C6—H6119.3C25—C26—H26119.2
C5—C6—H6119.3C27—C26—H26119.2
C8—C7—C6117.7 (2)C28—C27—C26117.3 (2)
C8—C7—H7121.2C28—C27—H27121.4
C6—C7—H7121.2C26—C27—H27121.4
C7—C8—C9122.4 (2)C27—C28—C29122.23 (19)
C7—C8—N1128.23 (19)C27—C28—N21128.52 (19)
C9—C8—N1109.37 (17)C29—C28—N21109.23 (17)
C4—C9—C8118.71 (19)C24—C29—C28118.90 (18)
C4—C9—C3133.96 (19)C24—C29—C23134.09 (18)
C8—C9—C3107.33 (17)C28—C29—C23106.90 (17)
C3—C10—C11129.73 (19)C23—C30—C31127.71 (18)
C3—C10—H10115.1C23—C30—H30116.1
C11—C10—H10115.1C31—C30—H30116.1
C12—C11—C16115.33 (19)C32—C31—C36116.07 (18)
C12—C11—C10125.09 (19)C32—C31—C30120.65 (18)
C16—C11—C10119.4 (2)C36—C31—C30123.21 (19)
C13—C12—C11122.4 (2)C33—C32—C31122.9 (2)
C13—C12—Cl12117.53 (19)C33—C32—Cl32118.52 (19)
C11—C12—Cl12120.03 (16)C31—C32—Cl32118.61 (15)
C14—C13—C12119.5 (2)C34—C33—C32118.8 (2)
C14—C13—H13120.3C34—C33—H33120.6
C12—C13—H13120.3C32—C33—H33120.6
C13—C14—C15120.7 (2)C33—C34—C35121.0 (2)
C13—C14—H14119.7C33—C34—H34119.5
C15—C14—H14119.7C35—C34—H34119.5
C14—C15—C16119.2 (2)C34—C35—C36119.3 (2)
C14—C15—H15120.4C34—C35—H35120.3
C16—C15—H15120.4C36—C35—H35120.3
C15—C16—C11122.9 (2)C35—C36—C31122.0 (2)
C15—C16—Cl16118.9 (2)C35—C36—Cl36118.96 (19)
C11—C16—Cl16118.12 (17)C31—C36—Cl36119.08 (16)
D—H···AD—HH···AD···AD—H···A
N21—H21···O22i0.862.032.854 (2)159
N1—H1···O2ii0.861.992.837 (2)171
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N21—H21⋯O22i0.862.032.854 (2)159
N1—H1⋯O2ii0.861.992.837 (2)171

Symmetry codes: (i) ; (ii) .

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6.  Synthesis and structure-activity relationship studies of 3-substituted indolin-2-ones as effective neuroprotective agents.

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7.  (E)-5-Chloro-3-(2,6-dichloro-benzyl-idene)-indolin-2-one.

Authors:  Hongming Zhang; Haribabu Ankati; Shashidhar Kumar Akubathini; Ed Biehl
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-10-11

8.  (Z)-5-Fluoro-3-[(1H-pyrrol-2-yl)methyl-ene]indolin-2-one.

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9.  (E)-5-Bromo-3-(2,6-dichloro-benzyl-idene)indolin-2-one.

Authors:  Hongming Zhang; Haribabu Ankati; Shashidhar Kumar Akubathini; Ed Biehl
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-08-22

10.  (Z)-3-[(E)-3-Phenyl-allyl-idene]indolin-2-one.

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-01-23
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