Literature DB >> 21577618

(E)-5-Bromo-3-(2,6-dichloro-benzyl-idene)indolin-2-one.

Hongming Zhang1, Haribabu Ankati, Shashidhar Kumar Akubathini, Ed Biehl.   

Abstract

The title compound, C(15)H(8)BrCl(2)NO, crystallizes with two independent mol-ecules in the asymmetric unit. The dihedral angles between the two aromatic rings are 62.74 (9) and 63.50 (6)° in the two independent molecules. In the crystal, the mol-ecules are connected by N-H⋯O hydrogen bonds, forming two centrosymmetric dimers.

Entities:  

Year:  2009        PMID: 21577618      PMCID: PMC2970143          DOI: 10.1107/S160053680903270X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the pharmacological properties of 3-substituted indoline-2-ones, see: Andreani et al. (2006 ▶); Johnson et al. (2005 ▶); Sun et al. (2003 ▶). a series of 3-substituted indoline-2-one derivatives have been synthesized in our laboratory and their neuroprotective activities have been tested, see: Ankati et al., (2009 ▶); Balderamos et al. (2008 ▶). For the structures of some of the derivatives, see: Zhang et al. (2008 ▶, 2009a ▶,b ▶).

Experimental

Crystal data

C15H8BrCl2NO M = 369.03 Triclinic, a = 8.1018 (4) Å b = 13.5726 (7) Å c = 14.4904 (7) Å α = 63.575 (1)° β = 82.956 (1)° γ = 80.139 (1)° V = 1403.89 (12) Å3 Z = 4 Mo Kα radiation μ = 3.30 mm−1 T = 296 K 0.32 × 0.21 × 0.15 mm

Data collection

Bruker SMART APEX diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.416, T max = 0.636 17925 measured reflections 6832 independent reflections 5263 reflections with I > 2σ(I) R int = 0.017

Refinement

R[F 2 > 2σ(F 2)] = 0.038 wR(F 2) = 0.100 S = 1.05 6832 reflections 361 parameters H-atom parameters constrained Δρmax = 0.71 e Å−3 Δρmin = −0.76 e Å−3 Data collection: SMART (Bruker, 1997 ▶); cell refinement: SAINT (Bruker, 1997 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL and publCIF (Westrip, 2009 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S160053680903270X/bt5036sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053680903270X/bt5036Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H8BrCl2NOZ = 4
Mr = 369.03F(000) = 728
Triclinic, P1Dx = 1.746 Mg m3
a = 8.1018 (4) ÅMo Kα radiation, λ = 0.71073 Å
b = 13.5726 (7) ÅCell parameters from 8432 reflections
c = 14.4904 (7) Åθ = 2.6–28.2°
α = 63.575 (1)°µ = 3.30 mm1
β = 82.956 (1)°T = 296 K
γ = 80.139 (1)°Rods, yellow
V = 1403.89 (12) Å30.32 × 0.21 × 0.15 mm
Bruker SMART APEX diffractometer6832 independent reflections
Radiation source: fine-focus sealed tube5263 reflections with I > 2σ(I)
graphiteRint = 0.017
Detector resolution: 83.33 pixels mm-1θmax = 28.3°, θmin = 1.7°
φ and ω scansh = −10→10
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)k = −17→17
Tmin = 0.416, Tmax = 0.636l = −19→19
17925 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.038Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.100H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.0447P)2 + 0.697P] where P = (Fo2 + 2Fc2)/3
6832 reflections(Δ/σ)max = 0.001
361 parametersΔρmax = 0.71 e Å3
0 restraintsΔρmin = −0.76 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.6336 (3)0.42436 (16)0.61350 (15)0.0430 (5)
H10.61580.40890.56440.052*
C20.5806 (3)0.5237 (2)0.61601 (18)0.0405 (5)
O20.4970 (3)0.60288 (15)0.55199 (14)0.0556 (5)
C30.6430 (3)0.51560 (18)0.71349 (17)0.0360 (5)
C40.8056 (3)0.34403 (19)0.85758 (18)0.0385 (5)
H40.81250.37730.90070.046*
Br50.96940 (5)0.15148 (2)1.01371 (3)0.07361 (13)
C50.8708 (3)0.2340 (2)0.88452 (19)0.0426 (5)
C60.8650 (4)0.1838 (2)0.8206 (2)0.0500 (6)
H60.91280.11040.84020.060*
C70.7889 (3)0.2417 (2)0.7280 (2)0.0479 (6)
H70.78350.20820.68490.057*
C80.7211 (3)0.35044 (19)0.70100 (18)0.0376 (5)
C90.7300 (3)0.40275 (18)0.76408 (17)0.0349 (5)
C100.6107 (3)0.60116 (19)0.73755 (18)0.0395 (5)
H100.54680.66370.69140.047*
C110.6620 (3)0.61086 (17)0.82716 (17)0.0353 (5)
C120.8280 (3)0.60502 (19)0.84706 (18)0.0397 (5)
Cl120.98958 (9)0.57914 (6)0.76720 (6)0.05545 (17)
C130.8707 (4)0.6252 (2)0.9265 (2)0.0536 (7)
H130.98280.62140.93740.064*
C140.7468 (4)0.6506 (3)0.9884 (2)0.0607 (8)
H140.77500.66351.04200.073*
C150.5811 (4)0.6572 (2)0.9723 (2)0.0543 (7)
H150.49680.67441.01450.065*
C160.5418 (3)0.6379 (2)0.89234 (19)0.0428 (5)
Cl160.33175 (9)0.64656 (8)0.87280 (6)0.0684 (2)
N210.8680 (3)0.62560 (16)0.40279 (16)0.0434 (5)
H210.89250.55980.40650.052*
C220.9185 (3)0.65805 (19)0.46956 (18)0.0419 (5)
O221.0070 (3)0.60169 (14)0.54175 (14)0.0579 (5)
C230.8454 (3)0.77842 (18)0.43524 (18)0.0390 (5)
C240.6607 (3)0.9048 (2)0.27961 (19)0.0430 (5)
H240.64850.96860.29000.052*
Br250.44460 (5)1.03332 (3)0.11691 (2)0.07282 (12)
C250.5849 (3)0.9036 (2)0.19976 (19)0.0474 (6)
C260.6033 (4)0.8103 (2)0.1816 (2)0.0521 (6)
H260.55260.81270.12630.063*
C270.6976 (3)0.7130 (2)0.2461 (2)0.0479 (6)
H270.71070.64970.23490.058*
C280.7708 (3)0.71278 (19)0.32688 (18)0.0395 (5)
C290.7555 (3)0.80790 (19)0.34385 (18)0.0384 (5)
C300.8691 (3)0.83197 (19)0.48988 (19)0.0422 (5)
H300.92330.78920.55100.051*
C310.8202 (3)0.95013 (19)0.46537 (18)0.0400 (5)
C320.8786 (3)1.0363 (2)0.37702 (19)0.0431 (6)
Cl321.01330 (10)1.00841 (6)0.28626 (5)0.05811 (18)
C330.8399 (4)1.1464 (2)0.3591 (2)0.0504 (6)
H330.88071.20190.29910.060*
C340.7402 (4)1.1731 (2)0.4310 (3)0.0565 (7)
H340.71341.24700.41930.068*
C350.6804 (4)1.0910 (2)0.5199 (2)0.0547 (7)
H350.61241.10900.56820.066*
C360.7223 (3)0.9814 (2)0.5366 (2)0.0448 (6)
Cl360.65098 (11)0.87932 (6)0.65137 (6)0.0638 (2)
U11U22U33U12U13U23
N10.0579 (13)0.0407 (11)0.0374 (10)0.0041 (9)−0.0129 (9)−0.0243 (9)
C20.0470 (13)0.0406 (12)0.0382 (12)0.0014 (10)−0.0097 (10)−0.0217 (10)
O20.0774 (13)0.0466 (10)0.0478 (10)0.0152 (9)−0.0307 (9)−0.0262 (9)
C30.0416 (12)0.0362 (11)0.0320 (11)−0.0009 (9)−0.0080 (9)−0.0162 (9)
C40.0453 (13)0.0368 (12)0.0361 (12)−0.0017 (10)−0.0087 (10)−0.0179 (10)
Br50.1111 (3)0.04428 (16)0.0599 (2)0.01126 (16)−0.04425 (19)−0.01523 (14)
C50.0495 (14)0.0363 (12)0.0382 (12)0.0011 (10)−0.0125 (10)−0.0125 (10)
C60.0612 (16)0.0339 (12)0.0545 (15)0.0061 (11)−0.0119 (13)−0.0208 (11)
C70.0598 (16)0.0417 (13)0.0503 (15)0.0029 (11)−0.0093 (12)−0.0290 (12)
C80.0423 (12)0.0374 (11)0.0356 (11)−0.0015 (9)−0.0047 (9)−0.0188 (10)
C90.0381 (12)0.0322 (11)0.0364 (11)−0.0014 (9)−0.0050 (9)−0.0170 (9)
C100.0478 (13)0.0337 (11)0.0379 (12)0.0021 (10)−0.0131 (10)−0.0161 (10)
C110.0459 (13)0.0264 (10)0.0342 (11)−0.0025 (9)−0.0085 (9)−0.0130 (9)
C120.0464 (13)0.0366 (12)0.0374 (12)−0.0046 (10)−0.0031 (10)−0.0171 (10)
Cl120.0489 (4)0.0663 (4)0.0600 (4)−0.0104 (3)0.0043 (3)−0.0361 (4)
C130.0518 (15)0.0670 (18)0.0520 (15)−0.0146 (13)−0.0099 (12)−0.0306 (14)
C140.074 (2)0.076 (2)0.0509 (16)−0.0181 (16)−0.0059 (14)−0.0415 (16)
C150.0632 (18)0.0613 (17)0.0472 (15)−0.0045 (14)0.0003 (13)−0.0334 (14)
C160.0465 (13)0.0397 (12)0.0430 (13)−0.0008 (10)−0.0082 (10)−0.0188 (11)
Cl160.0448 (4)0.0928 (6)0.0682 (5)0.0046 (4)−0.0105 (3)−0.0384 (4)
N210.0603 (13)0.0286 (9)0.0432 (11)0.0016 (9)−0.0053 (9)−0.0194 (8)
C220.0593 (15)0.0288 (11)0.0356 (12)0.0029 (10)−0.0043 (11)−0.0149 (9)
O220.0911 (15)0.0341 (9)0.0474 (10)0.0165 (9)−0.0246 (10)−0.0201 (8)
C230.0516 (14)0.0281 (10)0.0367 (12)0.0038 (10)−0.0070 (10)−0.0155 (9)
C240.0531 (14)0.0336 (12)0.0420 (13)0.0012 (10)−0.0065 (11)−0.0176 (10)
Br250.0913 (3)0.0635 (2)0.05517 (19)0.02261 (17)−0.03042 (17)−0.02304 (15)
C250.0557 (15)0.0437 (13)0.0381 (13)0.0037 (11)−0.0087 (11)−0.0156 (11)
C260.0622 (17)0.0571 (16)0.0437 (14)−0.0032 (13)−0.0117 (12)−0.0272 (13)
C270.0614 (16)0.0445 (14)0.0469 (14)−0.0043 (12)−0.0048 (12)−0.0283 (12)
C280.0472 (13)0.0340 (11)0.0376 (12)−0.0019 (10)0.0003 (10)−0.0177 (10)
C290.0479 (13)0.0328 (11)0.0353 (11)−0.0007 (10)−0.0034 (10)−0.0170 (9)
C300.0563 (15)0.0310 (11)0.0379 (12)0.0046 (10)−0.0117 (11)−0.0150 (10)
C310.0514 (14)0.0311 (11)0.0407 (12)0.0032 (10)−0.0158 (10)−0.0182 (10)
C320.0559 (15)0.0360 (12)0.0414 (13)0.0028 (11)−0.0169 (11)−0.0198 (10)
Cl320.0826 (5)0.0496 (4)0.0426 (3)−0.0062 (3)−0.0018 (3)−0.0216 (3)
C330.0662 (17)0.0316 (12)0.0511 (15)0.0004 (11)−0.0242 (13)−0.0129 (11)
C340.0621 (17)0.0323 (12)0.080 (2)0.0102 (12)−0.0234 (15)−0.0300 (14)
C350.0555 (16)0.0471 (15)0.0724 (19)0.0055 (12)−0.0095 (14)−0.0382 (15)
C360.0538 (15)0.0372 (12)0.0480 (14)−0.0016 (11)−0.0095 (11)−0.0226 (11)
Cl360.0846 (5)0.0547 (4)0.0569 (4)−0.0150 (4)0.0079 (4)−0.0293 (3)
N1—C21.358 (3)N21—C221.355 (3)
N1—C81.400 (3)N21—C281.402 (3)
N1—H10.8600N21—H210.8600
C2—O21.222 (3)C22—O221.216 (3)
C2—C31.511 (3)C22—C231.512 (3)
C3—C101.331 (3)C23—C301.338 (3)
C3—C91.462 (3)C23—C291.452 (3)
C4—C91.386 (3)C24—C251.382 (4)
C4—C51.387 (3)C24—C291.387 (3)
C4—H40.9300C24—H240.9300
Br5—C51.895 (2)Br25—C251.898 (3)
C5—C61.381 (4)C25—C261.384 (4)
C6—C71.377 (4)C26—C271.390 (4)
C6—H60.9300C26—H260.9300
C7—C81.376 (3)C27—C281.374 (3)
C7—H70.9300C27—H270.9300
C8—C91.399 (3)C28—C291.401 (3)
C10—C111.476 (3)C30—C311.471 (3)
C10—H100.9300C30—H300.9300
C11—C161.392 (3)C31—C321.392 (4)
C11—C121.392 (3)C31—C361.396 (3)
C12—C131.389 (3)C32—C331.383 (3)
C12—Cl121.734 (2)C32—Cl321.736 (3)
C13—C141.367 (4)C33—C341.377 (4)
C13—H130.9300C33—H330.9300
C14—C151.372 (4)C34—C351.375 (4)
C14—H140.9300C34—H340.9300
C15—C161.378 (4)C35—C361.383 (4)
C15—H150.9300C35—H350.9300
C16—Cl161.735 (3)C36—Cl361.734 (3)
C2—N1—C8111.37 (19)C22—N21—C28111.50 (19)
C2—N1—H1124.3C22—N21—H21124.2
C8—N1—H1124.3C28—N21—H21124.2
O2—C2—N1126.1 (2)O22—C22—N21126.6 (2)
O2—C2—C3127.3 (2)O22—C22—C23127.0 (2)
N1—C2—C3106.56 (19)N21—C22—C23106.4 (2)
C10—C3—C9134.0 (2)C30—C23—C29134.6 (2)
C10—C3—C2120.7 (2)C30—C23—C22119.8 (2)
C9—C3—C2105.30 (18)C29—C23—C22105.55 (19)
C9—C4—C5117.6 (2)C25—C24—C29118.0 (2)
C9—C4—H4121.2C25—C24—H24121.0
C5—C4—H4121.2C29—C24—H24121.0
C6—C5—C4122.1 (2)C24—C25—C26122.2 (2)
C6—C5—Br5119.79 (18)C24—C25—Br25117.97 (19)
C4—C5—Br5118.14 (18)C26—C25—Br25119.8 (2)
C7—C6—C5120.4 (2)C25—C26—C27119.9 (2)
C7—C6—H6119.8C25—C26—H26120.0
C5—C6—H6119.8C27—C26—H26120.0
C8—C7—C6118.2 (2)C28—C27—C26118.3 (2)
C8—C7—H7120.9C28—C27—H27120.8
C6—C7—H7120.9C26—C27—H27120.8
C7—C8—C9121.8 (2)C27—C28—C29121.8 (2)
C7—C8—N1128.7 (2)C27—C28—N21129.0 (2)
C9—C8—N1109.52 (19)C29—C28—N21109.2 (2)
C4—C9—C8119.9 (2)C24—C29—C28119.8 (2)
C4—C9—C3132.8 (2)C24—C29—C23132.8 (2)
C8—C9—C3107.23 (19)C28—C29—C23107.3 (2)
C3—C10—C11129.2 (2)C23—C30—C31128.1 (2)
C3—C10—H10115.4C23—C30—H30115.9
C11—C10—H10115.4C31—C30—H30115.9
C16—C11—C12115.5 (2)C32—C31—C36115.8 (2)
C16—C11—C10120.2 (2)C32—C31—C30123.7 (2)
C12—C11—C10124.0 (2)C36—C31—C30120.3 (2)
C13—C12—C11122.2 (2)C33—C32—C31122.6 (2)
C13—C12—Cl12117.7 (2)C33—C32—Cl32116.8 (2)
C11—C12—Cl12120.01 (18)C31—C32—Cl32120.54 (18)
C14—C13—C12119.5 (3)C34—C33—C32119.4 (3)
C14—C13—H13120.2C34—C33—H33120.3
C12—C13—H13120.2C32—C33—H33120.3
C13—C14—C15120.6 (3)C35—C34—C33120.3 (2)
C13—C14—H14119.7C35—C34—H34119.9
C15—C14—H14119.7C33—C34—H34119.9
C14—C15—C16118.8 (3)C34—C35—C36119.3 (3)
C14—C15—H15120.6C34—C35—H35120.4
C16—C15—H15120.6C36—C35—H35120.4
C15—C16—C11123.3 (2)C35—C36—C31122.6 (3)
C15—C16—Cl16118.3 (2)C35—C36—Cl36118.3 (2)
C11—C16—Cl16118.34 (18)C31—C36—Cl36119.07 (19)
D—H···AD—HH···AD···AD—H···A
N21—H21···O22i0.862.032.848 (3)160
N1—H1···O2ii0.862.092.924 (3)163
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N21—H21⋯O22i0.862.032.848 (3)160
N1—H1⋯O2ii0.862.092.924 (3)163

Symmetry codes: (i) ; (ii) .

  8 in total

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Authors:  Li Sun; Chris Liang; Sheri Shirazian; Yong Zhou; Todd Miller; Jean Cui; Juri Y Fukuda; Ji-Yu Chu; Asaad Nematalla; Xueyan Wang; Hui Chen; Anand Sistla; Tony C Luu; Flora Tang; James Wei; Cho Tang
Journal:  J Med Chem       Date:  2003-03-27       Impact factor: 7.446

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Inhibition of neuronal apoptosis by the cyclin-dependent kinase inhibitor GW8510: identification of 3' substituted indolones as a scaffold for the development of neuroprotective drugs.

Authors:  Kyle Johnson; Li Liu; Nazanin Majdzadeh; Cindy Chavez; Paul C Chin; Brad Morrison; Lulu Wang; Jane Park; Priti Chugh; Hsin-Mei Chen; Santosh R D'Mello
Journal:  J Neurochem       Date:  2005-05       Impact factor: 5.372

4.  Antitumor activity of substituted E-3-(3,4,5-trimethoxybenzylidene)-1,3-dihydroindol-2-ones1.

Authors:  Aldo Andreani; Silvia Burnelli; Massimiliano Granaiola; Alberto Leoni; Alessandra Locatelli; Rita Morigi; Mirella Rambaldi; Lucilla Varoli; Mark W Kunkel
Journal:  J Med Chem       Date:  2006-11-16       Impact factor: 7.446

5.  Synthesis and structure-activity relationship studies of 3-substituted indolin-2-ones as effective neuroprotective agents.

Authors:  Michael Balderamos; Haribabu Ankati; Shashidhar Kumar Akubathini; Anish V Patel; Sukanta Kamila; Chandrani Mukherjee; Lulu Wang; Edward R Biehl; Santosh R D'Mello
Journal:  Exp Biol Med (Maywood)       Date:  2008-11

6.  (E)-5-Chloro-3-(2,6-dichloro-benzyl-idene)-indolin-2-one.

Authors:  Hongming Zhang; Haribabu Ankati; Shashidhar Kumar Akubathini; Ed Biehl
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-10-11

7.  (Z)-5-Fluoro-3-[(1H-pyrrol-2-yl)methyl-ene]indolin-2-one.

Authors:  Hongming Zhang; Haribabu Ankati; Shashidhar Kumar Akubathini; Ed Biehl
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-12-03

8.  (Z)-3-[(E)-3-Phenyl-allyl-idene]indolin-2-one.

Authors:  Hongming Zhang; Shashidhar Kumar Akubathini; Haribabu Ankati; Ed Biehl
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-01-23
  8 in total
  1 in total

1.  (E)-3-(2,6-Dichloro-benzyl-idene)indolin-2-one.

Authors:  Hongming Zhang; Haribabu Ankati; Ed Biehl
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-10-28
  1 in total

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