Literature DB >> 21578449

Ethyl 6-amino-5-cyano-2-methyl-4-propyl-4H-pyran-3-carboxyl-ate.

Qun-Di Yu, Ke-Xin Li, Yun-Yu Liu.   

Abstract

The pyran ring of the title compound, C(13)H(18)N(2)O(3), is almost planar (r.m.s. deviation = 0.059 Å). The crystal packing is stabilized by N-H⋯O and N-H⋯N hydrogen bonds.

Entities:  

Year:  2009        PMID: 21578449      PMCID: PMC2971089          DOI: 10.1107/S1600536809043748

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

Ethyl 6-amino-5-cyano-2-methyl-4-propyl-4H-pyran-3-carb­ox­yl­ate and its derivatives are widely utilized as organic inter­mediates, see: Liang et al. (2009 ▶).

Experimental

Crystal data

C13H18N2O3 M = 250.15 Triclinic, a = 8.1172 (9) Å b = 8.7956 (9) Å c = 11.2877 (19) Å α = 106.082 (12)° β = 107.274 (12)° γ = 103.315 (9)° V = 695.20 (19) Å3 Z = 2 Mo Kα radiation μ = 0.09 mm−1 T = 293 K 0.25 × 0.23 × 0.20 mm

Data collection

Bruker SMART APEX CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 1998 ▶) T min = 0.65, T max = 0.87 5049 measured reflections 2826 independent reflections 1577 reflections with I > 2σ(I) R int = 0.023

Refinement

R[F 2 > 2σ(F 2)] = 0.046 wR(F 2) = 0.129 S = 0.89 2826 reflections 172 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.13 e Å−3 Δρmin = −0.22 e Å−3 Data collection: SMART (Bruker, 1998 ▶); cell refinement: SAINT (Bruker, 1998 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809043748/bt5109sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809043748/bt5109Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H18N2O3Z = 2
Mr = 250.15F(000) = 268
Triclinic, P1Dx = 1.195 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.1172 (9) ÅCell parameters from 2826 reflections
b = 8.7956 (9) Åθ = 3.0–26.4°
c = 11.2877 (19) ŵ = 0.09 mm1
α = 106.082 (12)°T = 293 K
β = 107.274 (12)°Block, colorless
γ = 103.315 (9)°0.25 × 0.23 × 0.20 mm
V = 695.20 (19) Å3
Bruker APEX CCD area-detector diffractometer2826 independent reflections
Radiation source: fine-focus sealed tube1577 reflections with I > 2σ(I)
graphiteRint = 0.023
φ and ω scansθmax = 26.4°, θmin = 2.6°
Absorption correction: multi-scan (SADABS; Bruker, 1998)h = −10→10
Tmin = 0.65, Tmax = 0.87k = −10→10
5049 measured reflectionsl = −13→14
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.046Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.129H atoms treated by a mixture of independent and constrained refinement
S = 0.89w = 1/[σ2(Fo2) + (0.0757P)2] where P = (Fo2 + 2Fc2)/3
2826 reflections(Δ/σ)max < 0.001
172 parametersΔρmax = 0.13 e Å3
0 restraintsΔρmin = −0.21 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C1−0.2429 (2)−0.09571 (19)0.63342 (17)0.0444 (4)
C2−0.1346 (2)−0.18666 (19)0.61071 (16)0.0428 (4)
C3−0.2165 (2)−0.3640 (2)0.55184 (18)0.0507 (5)
C40.0703 (2)−0.10825 (19)0.65363 (16)0.0416 (4)
H40.1012−0.15300.57650.050*
C50.1778 (2)−0.1557 (2)0.76684 (17)0.0513 (5)
H5A0.1418−0.27740.73620.062*
H5B0.3075−0.11170.78500.062*
C60.1500 (3)−0.0922 (3)0.8948 (2)0.0716 (6)
H6A0.0195−0.12710.87560.086*
H6B0.19760.02980.93050.086*
C70.2423 (4)−0.1545 (3)1.0004 (2)0.1038 (9)
H7A0.2186−0.11021.07910.156*
H7B0.3723−0.11751.02230.156*
H7C0.1945−0.27530.96660.156*
C80.0021 (2)0.1608 (2)0.70345 (17)0.0446 (4)
C90.1207 (2)0.08115 (19)0.69043 (16)0.0404 (4)
C100.0223 (3)0.3431 (2)0.7354 (2)0.0670 (6)
H10A−0.08680.35240.67920.101*
H10B0.12580.39890.71990.101*
H10C0.04090.39470.82740.101*
C110.3091 (2)0.1666 (2)0.70545 (18)0.0466 (4)
C120.5617 (3)0.4184 (3)0.7863 (2)0.0737 (6)
H12A0.56460.40160.69840.088*
H12B0.64910.37490.83260.088*
C130.6091 (4)0.5982 (3)0.8618 (3)0.1117 (9)
H13A0.73000.65840.87130.168*
H13B0.60610.61350.94860.168*
H13C0.52220.64030.81490.168*
N2−0.4192 (2)−0.1503 (2)0.61418 (18)0.0606 (5)
N1−0.2822 (2)−0.5075 (2)0.50412 (19)0.0763 (6)
O3−0.17565 (15)0.07590 (13)0.68500 (12)0.0530 (3)
O10.39733 (18)0.09129 (16)0.65942 (14)0.0694 (4)
O20.37809 (16)0.33123 (15)0.77399 (14)0.0612 (4)
H2A−0.472 (2)−0.083 (2)0.6160 (17)0.055 (5)*
H2B−0.485 (3)−0.253 (3)0.585 (2)0.062 (6)*
U11U22U33U12U13U23
C10.0435 (10)0.0357 (9)0.0503 (11)0.0118 (8)0.0178 (8)0.0123 (8)
C20.0427 (10)0.0356 (9)0.0466 (10)0.0149 (8)0.0133 (8)0.0131 (8)
C30.0410 (10)0.0451 (11)0.0606 (12)0.0174 (9)0.0140 (9)0.0157 (9)
C40.0439 (10)0.0366 (9)0.0449 (10)0.0182 (8)0.0168 (8)0.0129 (7)
C50.0490 (11)0.0426 (10)0.0593 (12)0.0179 (8)0.0138 (9)0.0205 (9)
C60.0846 (16)0.0705 (14)0.0584 (13)0.0299 (12)0.0213 (11)0.0261 (11)
C70.130 (2)0.109 (2)0.0662 (15)0.0379 (18)0.0184 (15)0.0482 (16)
C80.0421 (10)0.0380 (9)0.0533 (11)0.0135 (8)0.0195 (8)0.0152 (8)
C90.0412 (10)0.0380 (9)0.0441 (10)0.0155 (8)0.0161 (8)0.0173 (8)
C100.0593 (13)0.0393 (10)0.1052 (17)0.0212 (9)0.0362 (12)0.0222 (11)
C110.0453 (10)0.0486 (11)0.0552 (11)0.0215 (9)0.0197 (9)0.0281 (9)
C120.0484 (12)0.0710 (14)0.0989 (17)0.0079 (11)0.0285 (12)0.0374 (13)
C130.0887 (19)0.0724 (17)0.134 (3)−0.0179 (14)0.0439 (18)0.0169 (17)
N20.0453 (10)0.0414 (10)0.0917 (13)0.0153 (9)0.0289 (9)0.0167 (9)
N10.0583 (11)0.0403 (10)0.1089 (15)0.0124 (9)0.0212 (10)0.0126 (10)
O30.0443 (7)0.0348 (6)0.0765 (9)0.0148 (6)0.0265 (6)0.0115 (6)
O10.0578 (9)0.0646 (9)0.1057 (12)0.0336 (7)0.0447 (8)0.0355 (8)
O20.0470 (7)0.0474 (8)0.0829 (10)0.0073 (6)0.0285 (7)0.0184 (7)
C1—N21.329 (2)C8—C91.333 (2)
C1—C21.350 (2)C8—O31.3862 (19)
C1—O31.3638 (19)C8—C101.501 (2)
C2—C31.415 (2)C9—C111.476 (2)
C2—C41.512 (2)C10—H10A0.9600
C3—N11.145 (2)C10—H10B0.9600
C4—C91.522 (2)C10—H10C0.9600
C4—C51.540 (2)C11—O11.2122 (18)
C4—H40.9800C11—O21.326 (2)
C5—C61.502 (3)C12—O21.456 (2)
C5—H5A0.9700C12—C131.467 (3)
C5—H5B0.9700C12—H12A0.9700
C6—C71.517 (3)C12—H12B0.9700
C6—H6A0.9700C13—H13A0.9600
C6—H6B0.9700C13—H13B0.9600
C7—H7A0.9600C13—H13C0.9600
C7—H7B0.9600N2—H2A0.805 (18)
C7—H7C0.9600N2—H2B0.85 (2)
N2—C1—C2128.59 (16)C9—C8—C10130.81 (16)
N2—C1—O3110.12 (13)O3—C8—C10107.27 (12)
C2—C1—O3121.28 (15)C8—C9—C11123.41 (14)
C1—C2—C3117.85 (15)C8—C9—C4122.47 (15)
C1—C2—C4122.94 (14)C11—C9—C4114.08 (12)
C3—C2—C4119.09 (12)C8—C10—H10A109.5
N1—C3—C2179.8 (2)C8—C10—H10B109.5
C2—C4—C9109.31 (11)H10A—C10—H10B109.5
C2—C4—C5111.67 (13)C8—C10—H10C109.5
C9—C4—C5112.78 (13)H10A—C10—H10C109.5
C2—C4—H4107.6H10B—C10—H10C109.5
C9—C4—H4107.6O1—C11—O2121.58 (16)
C5—C4—H4107.6O1—C11—C9122.36 (16)
C6—C5—C4114.61 (13)O2—C11—C9116.06 (13)
C6—C5—H5A108.6O2—C12—C13107.97 (17)
C4—C5—H5A108.6O2—C12—H12A110.1
C6—C5—H5B108.6C13—C12—H12A110.1
C4—C5—H5B108.6O2—C12—H12B110.1
H5A—C5—H5B107.6C13—C12—H12B110.1
C5—C6—C7113.67 (18)H12A—C12—H12B108.4
C5—C6—H6A108.8C12—C13—H13A109.5
C7—C6—H6A108.8C12—C13—H13B109.5
C5—C6—H6B108.8H13A—C13—H13B109.5
C7—C6—H6B108.8C12—C13—H13C109.5
H6A—C6—H6B107.7H13A—C13—H13C109.5
C6—C7—H7A109.5H13B—C13—H13C109.5
C6—C7—H7B109.5C1—N2—H2A117.1 (13)
H7A—C7—H7B109.5C1—N2—H2B124.7 (13)
C6—C7—H7C109.5H2A—N2—H2B117.0 (18)
H7A—C7—H7C109.5C1—O3—C8120.17 (11)
H7B—C7—H7C109.5C11—O2—C12116.81 (13)
C9—C8—O3121.91 (14)
D—H···AD—HH···AD···AD—H···A
N2—H2A···O1i0.805 (18)2.088 (19)2.881 (2)168.2 (17)
N2—H2B···N1ii0.85 (2)2.21 (2)3.035 (3)164.4 (17)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2A⋯O1i0.805 (18)2.088 (19)2.881 (2)168.2 (17)
N2—H2B⋯N1ii0.85 (2)2.21 (2)3.035 (3)164.4 (17)

Symmetry codes: (i) ; (ii) .

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Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

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