Literature DB >> 21578438

(1S,4S,5S,8R)-8-Nitro-oxy-2,6-dioxa-bicyclo-[3.3.0]octan-4-yl 3,4,5-triacetoxy-benzoate.

Yue Zhang1, Ping-An Wang, Meng-Yao Zhang, Xiao-Li Sun.   

Abstract

In the title compound, C(19)H(19)NO(13), one of the two fused furan-ose rings adopts an envelope conformation whereas the other displays a twisted conformation. The crystal structure is stabilized by inter-molecular C-H⋯π inter-actions between a methine H atom and the triacetoxy-phenyl ring of an adjacent mol-ecule, and by weak non-classical inter-molecular C-H⋯O hydrogen bonds.

Entities:  

Year:  2009        PMID: 21578438      PMCID: PMC2970955          DOI: 10.1107/S1600536809042524

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the preparation of the title compound, see: Velazquez et al. (2007 ▶), Calmès et al.(2003 ▶). For related structures, see: Ezhilmuthu et al. (2008 ▶). For the bioactivity of the title compound, see: Rigas & Williams (2008 ▶); Carini et al. (2002 ▶). For puckering parameters, see: Cremer & Pople (1975 ▶); Rao et al. (1981 ▶). For the determination of the absolute structure, see: van Koningsveld et al. (1984 ▶); Brown et al. (2000 ▶).

Experimental

Crystal data

C19H19NO13 M = 469.35 Monoclinic, a = 10.8053 (19) Å b = 6.5941 (12) Å c = 16.075 (3) Å β = 108.243 (3)° V = 1087.8 (3) Å3 Z = 2 Mo Kα radiation μ = 0.12 mm−1 T = 296 K 0.31 × 0.25 × 0.14 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2000 ▶) T min = 0.962, T max = 0.983 5474 measured reflections 2112 independent reflections 1394 reflections with I > 2σ(I) R int = 0.023

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.105 S = 1.02 2112 reflections 301 parameters H-atom parameters constrained Δρmax = 0.12 e Å−3 Δρmin = −0.14 e Å−3 Data collection: APEX2 (Bruker, 2000 ▶); cell refinement: SAINT (Bruker, 2000 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEPIII (Burnett & Johnson, 1996 ▶) and ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▶) and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809042524/dn2497sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809042524/dn2497Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C19H19NO13F(000) = 488
Mr = 469.35Dx = 1.433 Mg m3
Monoclinic, P21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ybCell parameters from 1117 reflections
a = 10.8053 (19) Åθ = 2.7–19.9°
b = 6.5941 (12) ŵ = 0.12 mm1
c = 16.075 (3) ÅT = 296 K
β = 108.243 (3)°Block, colorless
V = 1087.8 (3) Å30.31 × 0.25 × 0.14 mm
Z = 2
Bruker APEXII CCD area-detector diffractometer2112 independent reflections
Radiation source: fine-focus sealed tube1394 reflections with I > 2σ(I)
graphiteRint = 0.023
φ and ω scansθmax = 25.1°, θmin = 2.0°
Absorption correction: multi-scan (SADABS; Bruker, 2000)h = −12→12
Tmin = 0.962, Tmax = 0.983k = −7→7
5474 measured reflectionsl = 0→19
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.039Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.105H-atom parameters constrained
S = 1.01w = 1/[σ2(Fo2) + (0.0523P)2] where P = (Fo2 + 2Fc2)/3
2112 reflections(Δ/σ)max < 0.001
301 parametersΔρmax = 0.12 e Å3
0 restraintsΔρmin = −0.13 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N1−0.0658 (8)0.548 (4)0.4472 (4)0.1120 (17)
O2−0.0166 (3)0.369 (4)0.28660 (18)0.0708 (8)
O60.0245 (3)0.779 (4)0.21440 (17)0.0650 (8)
O80.5258 (2)−0.138 (4)0.32531 (17)0.0659 (8)
O90.3795 (4)−0.169 (4)0.39702 (18)0.0954 (12)
O100.5277 (3)−0.439 (4)0.20426 (18)0.0688 (8)
O110.4726 (3)−0.581 (4)0.3144 (2)0.0781 (9)
O120.3201 (3)−0.487 (4)0.05899 (17)0.0737 (8)
O130.3616 (5)−0.318 (4)−0.0486 (2)0.1167 (14)
O410.1465 (2)0.293 (4)0.17708 (15)0.0585 (7)
O420.0434 (3)0.151 (4)0.04764 (18)0.0826 (10)
O81−0.0735 (3)0.671 (4)0.37604 (19)0.0816 (9)
O820.0378 (6)0.480 (4)0.4869 (3)0.158 (2)
O83−0.1700 (6)0.521 (4)0.4569 (4)0.172 (2)
C10.0854 (4)0.513 (4)0.3148 (2)0.0605 (11)
H10.16560.44960.35200.073*
C3−0.0643 (4)0.367 (4)0.1932 (3)0.0649 (11)
H3A−0.14030.45330.17190.078*
H3B−0.08760.23030.17150.078*
C40.0463 (4)0.446 (4)0.1642 (2)0.0565 (10)
H40.01750.50080.10460.068*
C50.1061 (4)0.605 (4)0.2330 (2)0.0548 (10)
H50.19750.63480.23950.066*
C70.0305 (6)0.868 (4)0.2950 (3)0.0952 (17)
H7A−0.04960.94040.28990.114*
H7B0.10250.96300.31300.114*
C80.0497 (5)0.700 (4)0.3605 (3)0.0670 (11)
H80.11900.73220.41490.080*
C100.4899 (5)−0.151 (4)0.3995 (3)0.0729 (13)
C110.6060 (5)−0.142 (4)0.4792 (3)0.112 (2)
H11A0.6213−0.00440.49910.168*
H11B0.6808−0.19210.46550.168*
H11C0.5910−0.22430.52440.168*
C120.5425 (4)−0.574 (4)0.2703 (3)0.0662 (12)
C130.6544 (4)−0.711 (4)0.2740 (3)0.0902 (15)
H13A0.6682−0.80330.32230.135*
H13B0.7315−0.63130.28170.135*
H13C0.6353−0.78650.22040.135*
C140.3353 (5)−0.473 (4)−0.0211 (3)0.0778 (14)
C150.3109 (6)−0.673 (4)−0.0662 (3)0.1031 (18)
H15A0.3250−0.6620−0.12210.155*
H15B0.2225−0.7137−0.07450.155*
H15C0.3693−0.7721−0.03110.155*
C410.1323 (4)0.151 (4)0.1152 (2)0.0600 (11)
C420.2370 (4)−0.002 (4)0.1410 (2)0.0518 (9)
C430.3335 (4)0.005 (4)0.2218 (2)0.0544 (10)
H430.33480.11030.26050.065*
C440.4267 (4)−0.144 (4)0.2443 (2)0.0535 (10)
C450.4261 (4)−0.300 (4)0.1875 (2)0.0577 (10)
C460.3280 (4)−0.310 (4)0.1084 (2)0.0567 (10)
C470.2337 (4)−0.165 (4)0.0849 (2)0.0576 (10)
H470.1675−0.17450.03160.069*
U11U22U33U12U13U23
N10.154 (5)0.100 (4)0.110 (4)0.009 (4)0.083 (4)0.021 (3)
O20.100 (2)0.0474 (17)0.0766 (19)−0.0117 (17)0.0451 (17)0.0010 (16)
O60.087 (2)0.0495 (16)0.0616 (16)0.0065 (16)0.0272 (14)0.0106 (14)
O80.0588 (16)0.0684 (19)0.0611 (16)−0.0001 (15)0.0055 (14)−0.0052 (16)
O90.086 (2)0.139 (3)0.0596 (17)0.009 (3)0.0203 (17)0.007 (2)
O100.0723 (19)0.074 (2)0.0657 (17)0.0082 (17)0.0301 (15)0.0047 (16)
O110.092 (2)0.069 (2)0.0833 (19)−0.0089 (18)0.0409 (18)−0.0031 (18)
O120.099 (2)0.0669 (19)0.0561 (16)−0.0005 (19)0.0261 (15)−0.0150 (16)
O130.169 (4)0.120 (4)0.081 (2)−0.016 (4)0.067 (3)−0.010 (3)
O410.0613 (16)0.0570 (17)0.0504 (15)0.0048 (15)0.0076 (12)−0.0069 (14)
O420.097 (2)0.077 (2)0.0528 (15)0.0207 (19)−0.0076 (16)−0.0134 (17)
O810.093 (2)0.074 (2)0.0826 (19)0.0111 (19)0.0350 (18)−0.002 (2)
O820.174 (5)0.188 (6)0.125 (4)0.050 (5)0.064 (4)0.085 (4)
O830.195 (5)0.151 (5)0.233 (6)0.010 (5)0.161 (5)0.039 (5)
C10.073 (3)0.057 (3)0.050 (2)0.010 (3)0.0168 (19)0.008 (2)
C30.054 (2)0.052 (2)0.082 (3)−0.001 (2)0.012 (2)0.004 (2)
C40.061 (2)0.056 (2)0.047 (2)0.005 (2)0.0093 (19)−0.0003 (19)
C50.062 (2)0.051 (2)0.051 (2)0.001 (2)0.0169 (19)0.0018 (19)
C70.156 (5)0.059 (3)0.085 (3)0.019 (4)0.059 (3)0.001 (3)
C80.083 (3)0.060 (3)0.060 (2)0.005 (2)0.026 (2)−0.001 (2)
C100.078 (3)0.078 (3)0.055 (3)0.004 (3)0.009 (2)−0.011 (2)
C110.091 (3)0.160 (6)0.063 (3)0.019 (4)−0.008 (3)−0.013 (4)
C120.071 (3)0.057 (3)0.071 (3)−0.016 (2)0.023 (2)−0.008 (2)
C130.069 (3)0.074 (3)0.132 (4)0.013 (3)0.036 (3)0.014 (3)
C140.077 (3)0.099 (4)0.056 (3)0.009 (3)0.018 (2)−0.021 (3)
C150.114 (4)0.109 (5)0.083 (3)0.006 (4)0.026 (3)−0.038 (4)
C410.082 (3)0.052 (3)0.044 (2)0.001 (2)0.017 (2)−0.001 (2)
C420.061 (2)0.048 (2)0.045 (2)−0.001 (2)0.0135 (18)−0.0041 (19)
C430.066 (2)0.047 (2)0.049 (2)−0.008 (2)0.0159 (19)−0.0077 (19)
C440.052 (2)0.057 (3)0.048 (2)−0.005 (2)0.0107 (18)−0.007 (2)
C450.059 (2)0.061 (3)0.056 (2)0.006 (2)0.021 (2)0.006 (2)
C460.072 (3)0.054 (2)0.046 (2)−0.006 (2)0.021 (2)−0.010 (2)
C470.071 (3)0.057 (3)0.0437 (19)−0.004 (2)0.0153 (19)−0.005 (2)
O2—C11.42 (3)C14—C151.49 (3)
O2—C31.427 (5)C41—C421.48 (3)
O6—C51.42 (3)C42—C431.389 (5)
O6—C71.405 (16)C42—C471.40 (3)
O8—C101.367 (6)C43—C441.37 (3)
O8—C441.404 (4)C44—C451.37 (3)
O9—C101.187 (8)C45—C461.379 (5)
O10—C121.36 (2)C46—C471.36 (3)
O10—C451.39 (2)C1—H10.9800
O11—C121.188 (6)C3—H3A0.9700
O12—C141.351 (6)C3—H3B0.9700
O12—C461.40 (3)C4—H40.9800
O13—C141.18 (3)C5—H50.9800
O41—C41.45 (3)C7—H7A0.9700
O41—C411.34 (3)C7—H7B0.9700
O42—C411.204 (5)C8—H80.9800
O81—N11.38 (2)C11—H11A0.9600
O81—C81.442 (8)C11—H11B0.9600
O82—N11.189 (17)C11—H11C0.9600
O83—N11.197 (12)C13—H13A0.9600
C1—C51.527 (15)C13—H13B0.9600
C1—C81.55 (3)C13—H13C0.9600
C3—C41.505 (14)C15—H15A0.9600
C4—C51.51 (3)C15—H15B0.9600
C7—C81.50 (3)C15—H15C0.9600
C10—C111.487 (7)C43—H430.9300
C12—C131.50 (2)C47—H470.9300
C1—O2—C3109.4 (13)O12—C46—C47121.4 (8)
C5—O6—C7107.3 (10)C45—C46—C47121.0 (18)
C10—O8—C44117.7 (4)C42—C47—C46119.7 (7)
C12—O10—C45118.5 (7)O2—C1—H1111.00
C14—O12—C46119 (2)C5—C1—H1111.00
C4—O41—C41118.3 (7)C8—C1—H1111.00
N1—O81—C8113.7 (11)O2—C3—H3A111.00
O81—N1—O82117.9 (10)O2—C3—H3B111.00
O81—N1—O83112.3 (12)C4—C3—H3A111.00
O82—N1—O83129.8 (18)C4—C3—H3B111.00
O2—C1—C5107.4 (8)H3A—C3—H3B109.00
O2—C1—C8113.7 (8)O41—C4—H4113.00
C5—C1—C8102.6 (18)C3—C4—H4113.00
O2—C3—C4105.2 (7)C5—C4—H4113.00
O41—C4—C3110.2 (19)O6—C5—H5114.00
O41—C4—C5104.4 (8)C1—C5—H5114.00
C3—C4—C5102.2 (8)C4—C5—H5114.00
O6—C5—C1104.7 (10)O6—C7—H7A110.00
O6—C5—C4108.1 (9)O6—C7—H7B110.00
C1—C5—C4102.1 (17)C8—C7—H7A110.00
O6—C7—C8107 (2)C8—C7—H7B110.00
O81—C8—C1111.0 (18)H7A—C7—H7B109.00
O81—C8—C7106.7 (12)O81—C8—H8111.00
C1—C8—C7104.9 (9)C1—C8—H8111.00
O8—C10—O9122.2 (4)C7—C8—H8111.00
O8—C10—C11110.8 (5)C10—C11—H11A110.00
O9—C10—C11126.9 (5)C10—C11—H11B109.00
O10—C12—O11123.5 (18)C10—C11—H11C109.00
O10—C12—C13108.9 (8)H11A—C11—H11B109.00
O11—C12—C13127.6 (19)H11A—C11—H11C110.00
O12—C14—O13122 (2)H11B—C11—H11C109.00
O12—C14—C15110.4 (19)C12—C13—H13A110.00
O13—C14—C15127.6 (8)C12—C13—H13B109.00
O41—C41—O42123 (2)C12—C13—H13C109.00
O41—C41—C42111.7 (8)H13A—C13—H13B110.00
O42—C41—C42125 (2)H13A—C13—H13C109.00
C41—C42—C43121.7 (17)H13B—C13—H13C110.00
C41—C42—C47118.9 (7)C14—C15—H15A109.00
C43—C42—C47119.3 (17)C14—C15—H15B109.00
C42—C43—C44119.8 (18)C14—C15—H15C109.00
O8—C44—C43120.5 (18)H15A—C15—H15B109.00
O8—C44—C45118.8 (17)H15A—C15—H15C110.00
C43—C44—C45120.7 (7)H15B—C15—H15C109.00
O10—C45—C44121.7 (7)C42—C43—H43120.00
O10—C45—C46118.7 (16)C44—C43—H43120.00
C44—C45—C46119.4 (17)C42—C47—H47120.00
O12—C46—C45117.1 (18)C46—C47—H47120.00
C3—O2—C1—C5−2(2)O2—C1—C8—C7−106.1 (12)
C3—O2—C1—C8111.2 (14)C5—C1—C8—O81124.5 (9)
C1—O2—C3—C424 (2)C5—C1—C8—C79.6 (7)
C7—O6—C5—C138.2 (16)O2—C3—C4—O4175 (2)
C7—O6—C5—C4146.4 (11)O2—C3—C4—C5−36 (2)
C5—O6—C7—C8−32.0 (12)O41—C4—C5—O6168.9 (10)
C44—O8—C10—O91(4)O41—C4—C5—C1−81.0 (10)
C44—O8—C10—C11−180 (2)C3—C4—C5—O6−76.2 (15)
C10—O8—C44—C4363 (3)C3—C4—C5—C133.9 (15)
C10—O8—C44—C45−118 (2)O6—C7—C8—O81−105.3 (13)
C45—O10—C12—O111(3)O6—C7—C8—C112.6 (7)
C45—O10—C12—C13178.2 (15)O41—C41—C42—C432(2)
C12—O10—C45—C4470 (3)O41—C41—C42—C47177.7 (14)
C12—O10—C45—C46−115.3 (16)O42—C41—C42—C43−177.5 (16)
C46—O12—C14—O134.0 (11)O42—C41—C42—C47−2(2)
C46—O12—C14—C15−174.5 (6)C41—C42—C43—C44177.9 (14)
C14—O12—C46—C45−118.2 (11)C47—C42—C43—C442(2)
C14—O12—C46—C4769.8 (11)C41—C42—C47—C46−178.7 (13)
C41—O41—C4—C383.5 (13)C43—C42—C47—C46−3(2)
C41—O41—C4—C5−167.3 (14)C42—C43—C44—O8179.3 (14)
C4—O41—C41—O424(2)C42—C43—C44—C450(2)
C4—O41—C41—C42−175.7 (13)O8—C44—C45—O10−7(2)
N1—O81—C8—C178.0 (16)O8—C44—C45—C46178.8 (14)
N1—O81—C8—C7−168.3 (17)C43—C44—C45—O10172.3 (15)
C8—O81—N1—O820(3)C43—C44—C45—C46−2(2)
C8—O81—N1—O83−178 (2)O10—C45—C46—O1215 (2)
O2—C1—C5—O691.8 (18)O10—C45—C46—C47−173.0 (15)
O2—C1—C5—C4−20.9 (17)C44—C45—C46—O12−170.4 (13)
C8—C1—C5—O6−28.4 (11)C44—C45—C46—C472(2)
C8—C1—C5—C4−141.0 (9)O12—C46—C47—C42172.6 (13)
O2—C1—C8—O818.8 (14)C45—C46—C47—C421(2)
D—H···AD—HH···AD···AD—H···A
C5—H5···Cg1i0.982.563.365 (13)139
C4—H4···O42ii0.982.533.507 (15)177
C43—H43···O11i0.932.513.25 (3)136
C47—H47···O42iii0.932.523.314 (14)144
C11—H11B···O83iv0.962.523.39 (3)151
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C5—H5⋯Cg1i0.982.563.365 (13)139
C4—H4⋯O42ii0.982.533.507 (15)177
C43—H43⋯O11i0.932.513.25 (3)136
C47—H47⋯O42iii0.932.523.314 (14)144
C11—H11B⋯O83iv0.962.523.39 (3)151

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) . Cg1 is the centroid of the C42–C47 phenyl ring.

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5.  4-Meth-oxy-5-[4-(4-meth-oxy-1,3-benzodioxol-5-yl)perhydro-1H,3H-furo[3,4-c]furan-1-yl]-1,3-benzodioxole.

Authors:  Rukmani Perumal Ezhilmuthu; Nagarajan Vembu; Nagarajan Sulochana
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-06-19

6.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  6 in total

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