Literature DB >> 21578260

2-(3-Bromo-prop-yl)isoindoline-1,3-dione.

Peng-Fei Cheng, Chao-Jie Wang, Yu-Xia Wang.   

Abstract

In the title compound, C(11)H(10)BrNO(2), the dihedral angle between the five- and six-membered rings of the phthalamide system is 1.00 (16)°. There are no significant inter-molecular inter-ations except for van der Waals contacts.

Entities:  

Year:  2009        PMID: 21578260      PMCID: PMC2971232          DOI: 10.1107/S1600536809038021

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For pharmacological background on phthalamides, see: Brańa & Ramos (2001 ▶).

Experimental

Crystal data

C11H10BrNO2 M = 268.11 Monoclinic, a = 4.8413 (7) Å b = 7.3401 (11) Å c = 15.095 (2) Å β = 91.729 (3)° V = 536.18 (14) Å3 Z = 2 Mo Kα radiation μ = 3.81 mm−1 T = 296 K 0.37 × 0.35 × 0.29 mm

Data collection

Bruker SMART CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2001 ▶) T min = 0.333, T max = 0.405 2879 measured reflections 1888 independent reflections 1622 reflections with I > 2σ(I) R int = 0.018

Refinement

R[F 2 > 2σ(F 2)] = 0.026 wR(F 2) = 0.060 S = 1.00 1888 reflections 136 parameters 1 restraint H-atom parameters constrained Δρmax = 0.41 e Å−3 Δρmin = −0.25 e Å−3 Absolute structure: Flack (1983 ▶), 763 Friedel pairs Flack parameter: 0.047 (11) Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT-Plus (Bruker, 2001 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: PLATON. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809038021/hb5110sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809038021/hb5110Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C11H10BrNO2F(000) = 268
Mr = 268.11Dx = 1.661 Mg m3
Monoclinic, P21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ybCell parameters from 1480 reflections
a = 4.8413 (7) Åθ = 2.8–24.1°
b = 7.3401 (11) ŵ = 3.81 mm1
c = 15.095 (2) ÅT = 296 K
β = 91.729 (3)°Block, colourless
V = 536.18 (14) Å30.37 × 0.35 × 0.29 mm
Z = 2
Bruker SMART CCD diffractometer1888 independent reflections
Radiation source: fine-focus sealed tube1622 reflections with I > 2σ(I)
graphiteRint = 0.018
ω scansθmax = 26.0°, θmin = 2.7°
Absorption correction: multi-scan (SADABS; Bruker, 2001)h = −5→4
Tmin = 0.333, Tmax = 0.405k = −9→8
2879 measured reflectionsl = −17→18
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.026H-atom parameters constrained
wR(F2) = 0.060w = 1/[σ2(Fo2) + (0.0027P)2] where P = (Fo2 + 2Fc2)/3
S = 1.00(Δ/σ)max = 0.001
1888 reflectionsΔρmax = 0.41 e Å3
136 parametersΔρmin = −0.25 e Å3
1 restraintAbsolute structure: Flack (1983), 763 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.047 (11)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.6038 (5)0.5266 (4)0.75371 (15)0.0421 (6)
Br10.85905 (7)−0.00237 (6)0.598616 (19)0.06409 (14)
O10.9554 (5)0.4693 (4)0.85776 (14)0.0650 (7)
O20.2346 (5)0.6583 (3)0.67773 (15)0.0544 (6)
C10.6620 (7)0.2145 (5)0.5540 (2)0.0525 (8)
H1A0.71940.24050.49430.063*
H1B0.46510.18970.55130.063*
C20.7160 (7)0.3787 (4)0.61137 (19)0.0492 (8)
H2A0.62880.48420.58380.059*
H2B0.91340.40120.61540.059*
C30.6075 (7)0.3556 (4)0.7045 (2)0.0489 (8)
H3A0.42150.30640.70040.059*
H3B0.72280.26850.73680.059*
C40.4095 (6)0.6634 (4)0.7365 (2)0.0415 (7)
C50.4650 (6)0.8063 (4)0.80381 (19)0.0398 (7)
C60.3321 (6)0.9709 (5)0.8172 (2)0.0480 (8)
H6A0.18561.00830.78030.058*
C70.4252 (8)1.0770 (5)0.8873 (2)0.0567 (9)
H7A0.34341.18960.89710.068*
C80.6392 (7)1.0182 (7)0.94342 (19)0.0571 (9)
H8A0.69511.09070.99120.068*
C90.7708 (7)0.8541 (5)0.9298 (2)0.0514 (8)
H9A0.91560.81580.96720.062*
C100.6813 (6)0.7490 (4)0.85924 (19)0.0409 (7)
C110.7744 (7)0.5670 (4)0.82773 (19)0.0464 (8)
U11U22U33U12U13U23
N10.0494 (13)0.0407 (19)0.0357 (11)0.0000 (12)−0.0045 (10)−0.0009 (12)
Br10.0801 (2)0.0547 (2)0.0575 (2)0.0109 (2)0.00154 (15)−0.0067 (3)
O10.0724 (15)0.0709 (18)0.0506 (11)0.0190 (15)−0.0163 (11)0.0038 (14)
O20.0581 (14)0.0549 (14)0.0491 (13)0.0018 (11)−0.0188 (11)−0.0052 (11)
C10.061 (2)0.054 (2)0.0415 (17)−0.0002 (15)−0.0124 (16)0.0022 (15)
C20.067 (2)0.0421 (17)0.0381 (16)−0.0027 (15)−0.0032 (15)0.0027 (14)
C30.066 (2)0.0390 (18)0.0416 (16)0.0025 (15)−0.0022 (15)0.0016 (14)
C40.0398 (17)0.0461 (18)0.0385 (16)−0.0046 (14)−0.0016 (14)0.0050 (13)
C50.0417 (16)0.0461 (17)0.0316 (14)−0.0081 (13)0.0013 (12)0.0027 (12)
C60.0529 (16)0.048 (2)0.0428 (14)−0.0023 (16)−0.0006 (12)−0.0015 (17)
C70.069 (2)0.0488 (18)0.053 (2)−0.0096 (16)0.0114 (18)−0.0059 (15)
C80.0614 (19)0.069 (3)0.0406 (15)−0.019 (2)0.0050 (14)−0.015 (2)
C90.0483 (19)0.069 (2)0.0363 (16)−0.0116 (17)−0.0025 (15)0.0002 (16)
C100.0424 (16)0.0505 (17)0.0300 (14)−0.0065 (13)0.0027 (13)0.0042 (13)
C110.0519 (19)0.0556 (19)0.0314 (15)−0.0024 (15)−0.0024 (14)0.0040 (13)
N1—C41.395 (4)C3—H3B0.9700
N1—C111.401 (4)C4—C51.479 (4)
N1—C31.459 (4)C5—C101.386 (4)
Br1—C11.965 (3)C5—C61.387 (5)
O1—C111.210 (4)C6—C71.379 (5)
O2—C41.208 (3)C6—H6A0.9300
C1—C21.503 (4)C7—C81.387 (5)
C1—H1A0.9700C7—H7A0.9300
C1—H1B0.9700C8—C91.381 (6)
C2—C31.525 (4)C8—H8A0.9300
C2—H2A0.9700C9—C101.374 (4)
C2—H2B0.9700C9—H9A0.9300
C3—H3A0.9700C10—C111.492 (4)
C4—N1—C11112.0 (3)N1—C4—C5106.0 (2)
C4—N1—C3122.9 (2)C10—C5—C6121.5 (3)
C11—N1—C3124.9 (3)C10—C5—C4108.5 (3)
C2—C1—Br1112.2 (2)C6—C5—C4130.0 (3)
C2—C1—H1A109.2C7—C6—C5117.5 (3)
Br1—C1—H1A109.2C7—C6—H6A121.3
C2—C1—H1B109.2C5—C6—H6A121.3
Br1—C1—H1B109.2C6—C7—C8120.9 (4)
H1A—C1—H1B107.9C6—C7—H7A119.5
C1—C2—C3112.6 (3)C8—C7—H7A119.5
C1—C2—H2A109.1C9—C8—C7121.3 (3)
C3—C2—H2A109.1C9—C8—H8A119.3
C1—C2—H2B109.1C7—C8—H8A119.3
C3—C2—H2B109.1C10—C9—C8117.9 (3)
H2A—C2—H2B107.8C10—C9—H9A121.0
N1—C3—C2112.5 (3)C8—C9—H9A121.0
N1—C3—H3A109.1C9—C10—C5120.8 (3)
C2—C3—H3A109.1C9—C10—C11131.2 (3)
N1—C3—H3B109.1C5—C10—C11108.0 (3)
C2—C3—H3B109.1O1—C11—N1125.2 (3)
H3A—C3—H3B107.8O1—C11—C10129.3 (3)
O2—C4—N1124.6 (3)N1—C11—C10105.5 (3)
O2—C4—C5129.4 (3)
Br1—C1—C2—C3−64.1 (4)C7—C8—C9—C10−0.8 (5)
C4—N1—C3—C274.3 (4)C8—C9—C10—C5−0.2 (5)
C11—N1—C3—C2−111.8 (3)C8—C9—C10—C11−178.9 (3)
C1—C2—C3—N1−167.3 (3)C6—C5—C10—C90.2 (4)
C11—N1—C4—O2−178.0 (3)C4—C5—C10—C9−178.1 (3)
C3—N1—C4—O2−3.4 (5)C6—C5—C10—C11179.1 (3)
C11—N1—C4—C51.7 (3)C4—C5—C10—C110.9 (3)
C3—N1—C4—C5176.3 (3)C4—N1—C11—O1178.3 (3)
O2—C4—C5—C10178.1 (3)C3—N1—C11—O13.8 (5)
N1—C4—C5—C10−1.6 (3)C4—N1—C11—C10−1.1 (3)
O2—C4—C5—C60.0 (5)C3—N1—C11—C10−175.6 (3)
N1—C4—C5—C6−179.6 (3)C9—C10—C11—O1−0.5 (5)
C10—C5—C6—C70.7 (4)C5—C10—C11—O1−179.3 (3)
C4—C5—C6—C7178.6 (3)C9—C10—C11—N1178.9 (3)
C5—C6—C7—C8−1.7 (5)C5—C10—C11—N10.1 (3)
C6—C7—C8—C91.7 (5)
  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

Review 2.  Naphthalimides as anti-cancer agents: synthesis and biological activity.

Authors:  M F Braña; A Ramos
Journal:  Curr Med Chem Anticancer Agents       Date:  2001-11

3.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  3 in total

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