| Literature DB >> 21578219 |
Abstract
All atoms of the title mol-ecule, C(12)H(13)BrClNO, except the C and H atoms of the cyclo-pentane methyl-ene groups lie on a crystallographic mirror plane. The cyclo-pentane ring adopts an envelope conformation and an intra-molecular O-H⋯N hydrogen bond is observed. In the crystal, mol-ecules are stacked along the b axis by π-π inter-actions [centroid-centroid distance = 3.6424 (11) Å].Entities:
Year: 2009 PMID: 21578219 PMCID: PMC2971220 DOI: 10.1107/S1600536809039142
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C12H13BrClNO | |
| Orthorhombic, | Mo |
| Hall symbol: -P 2ac 2n | Cell parameters from 2255 reflections |
| θ = 2.6–24.5° | |
| µ = 3.46 mm−1 | |
| Block, yellow | |
| 0.20 × 0.20 × 0.18 mm |
| Bruker SMART CCD area-detector diffractometer | 1488 independent reflections |
| Radiation source: fine-focus sealed tube | 1132 reflections with |
| graphite | |
| ω scans | θmax = 27.5°, θmin = 2.2° |
| Absorption correction: multi-scan ( | |
| 10340 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 1488 reflections | (Δ/σ)max = 0.001 |
| 93 parameters | Δρmax = 0.40 e Å−3 |
| 6 restraints | Δρmin = −0.89 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Br1 | −0.24144 (4) | 0.2500 | 0.43777 (4) | 0.0689 (3) | |
| Cl1 | 0.17429 (13) | 0.2500 | 0.29606 (9) | 0.0784 (5) | |
| O1 | −0.1127 (2) | 0.2500 | 0.60853 (19) | 0.0495 (7) | |
| H1 | −0.063 (5) | 0.2500 | 0.652 (4) | 0.074* | |
| N1 | 0.0610 (3) | 0.2500 | 0.7067 (2) | 0.0529 (9) | |
| C1 | 0.0712 (3) | 0.2500 | 0.5489 (3) | 0.0411 (9) | |
| C2 | −0.0460 (3) | 0.2500 | 0.5392 (3) | 0.0401 (9) | |
| C3 | −0.0878 (4) | 0.2500 | 0.4537 (3) | 0.0428 (9) | |
| C4 | −0.0210 (4) | 0.2500 | 0.3801 (3) | 0.0510 (11) | |
| H4 | −0.0517 | 0.2500 | 0.3235 | 0.061* | |
| C5 | 0.0921 (4) | 0.2500 | 0.3908 (3) | 0.0515 (11) | |
| C6 | 0.1374 (4) | 0.2500 | 0.4740 (3) | 0.0498 (10) | |
| H6 | 0.2136 | 0.2500 | 0.4804 | 0.060* | |
| C7 | 0.1190 (4) | 0.2500 | 0.6365 (3) | 0.0506 (10) | |
| H7 | 0.1953 | 0.2500 | 0.6418 | 0.061* | |
| C8 | 0.1145 (4) | 0.2500 | 0.7942 (3) | 0.0627 (14) | |
| H8 | 0.1950 | 0.2500 | 0.7893 | 0.075* | |
| C9 | 0.0723 (4) | 0.0775 (6) | 0.8482 (3) | 0.0887 (14) | |
| H9A | 0.0620 | −0.0359 | 0.8107 | 0.106* | |
| H9B | 0.1237 | 0.0447 | 0.8952 | 0.106* | |
| C10 | −0.0323 (5) | 0.1421 (10) | 0.8850 (4) | 0.133 (2) | |
| H10A | −0.0409 | 0.0934 | 0.9450 | 0.159* | |
| H10B | −0.0928 | 0.0934 | 0.8493 | 0.159* |
| Br1 | 0.0544 (3) | 0.0935 (5) | 0.0588 (4) | 0.000 | −0.0150 (2) | 0.000 |
| Cl1 | 0.0888 (10) | 0.0947 (11) | 0.0517 (7) | 0.000 | 0.0307 (7) | 0.000 |
| O1 | 0.0437 (16) | 0.0639 (19) | 0.0409 (16) | 0.000 | 0.0048 (13) | 0.000 |
| N1 | 0.048 (2) | 0.072 (3) | 0.0388 (19) | 0.000 | −0.0052 (16) | 0.000 |
| C1 | 0.041 (2) | 0.040 (2) | 0.042 (2) | 0.000 | −0.0002 (16) | 0.000 |
| C2 | 0.049 (2) | 0.032 (2) | 0.039 (2) | 0.000 | 0.0013 (17) | 0.000 |
| C3 | 0.051 (2) | 0.035 (2) | 0.042 (2) | 0.000 | −0.0035 (18) | 0.000 |
| C4 | 0.075 (3) | 0.043 (2) | 0.036 (2) | 0.000 | 0.001 (2) | 0.000 |
| C5 | 0.063 (3) | 0.049 (3) | 0.042 (2) | 0.000 | 0.015 (2) | 0.000 |
| C6 | 0.046 (2) | 0.049 (2) | 0.054 (3) | 0.000 | 0.012 (2) | 0.000 |
| C7 | 0.041 (2) | 0.061 (3) | 0.051 (2) | 0.000 | −0.0026 (19) | 0.000 |
| C8 | 0.043 (2) | 0.100 (4) | 0.046 (2) | 0.000 | −0.010 (2) | 0.000 |
| C9 | 0.134 (4) | 0.076 (3) | 0.057 (2) | 0.008 (3) | −0.034 (2) | 0.007 (2) |
| C10 | 0.108 (4) | 0.180 (6) | 0.110 (4) | −0.023 (4) | 0.015 (3) | 0.040 (4) |
| Br1—C3 | 1.881 (5) | C5—C6 | 1.370 (6) |
| Cl1—C5 | 1.743 (4) | C6—H6 | 0.93 |
| O1—C2 | 1.322 (5) | C7—H7 | 0.93 |
| O1—H1 | 0.89 (6) | C8—C9 | 1.526 (5) |
| N1—C7 | 1.271 (6) | C8—C9i | 1.526 (5) |
| N1—C8 | 1.470 (5) | C8—H8 | 0.98 |
| C1—C6 | 1.385 (6) | C9—C10 | 1.455 (7) |
| C1—C2 | 1.430 (6) | C9—H9A | 0.97 |
| C1—C7 | 1.443 (6) | C9—H9B | 0.97 |
| C2—C3 | 1.386 (6) | C10—C10i | 1.480 (14) |
| C3—C4 | 1.374 (6) | C10—H10A | 0.97 |
| C4—C5 | 1.383 (7) | C10—H10B | 0.97 |
| C4—H4 | 0.93 | ||
| C2—O1—H1 | 99 (4) | N1—C7—H7 | 118.7 |
| C7—N1—C8 | 120.1 (4) | C1—C7—H7 | 118.7 |
| C6—C1—C2 | 119.6 (4) | N1—C8—C9 | 109.3 (3) |
| C6—C1—C7 | 120.8 (4) | N1—C8—C9i | 109.3 (3) |
| C2—C1—C7 | 119.5 (4) | C9—C8—C9i | 101.7 (5) |
| O1—C2—C3 | 120.7 (4) | N1—C8—H8 | 112.0 |
| O1—C2—C1 | 121.9 (4) | C9—C8—H8 | 112.0 |
| C3—C2—C1 | 117.3 (4) | C9i—C8—H8 | 112.0 |
| C4—C3—C2 | 122.3 (4) | C10—C9—C8 | 105.1 (4) |
| C4—C3—Br1 | 118.9 (3) | C10—C9—H9A | 110.7 |
| C2—C3—Br1 | 118.8 (3) | C8—C9—H9A | 110.7 |
| C3—C4—C5 | 119.4 (4) | C10—C9—H9B | 110.7 |
| C3—C4—H4 | 120.3 | C8—C9—H9B | 110.7 |
| C5—C4—H4 | 120.3 | H9A—C9—H9B | 108.8 |
| C6—C5—C4 | 120.4 (4) | C9—C10—C10i | 107.7 (3) |
| C6—C5—Cl1 | 121.4 (4) | C9—C10—H10A | 110.2 |
| C4—C5—Cl1 | 118.2 (3) | C10i—C10—H10A | 110.2 |
| C5—C6—C1 | 120.8 (4) | C9—C10—H10B | 110.2 |
| C5—C6—H6 | 119.6 | C10i—C10—H10B | 110.2 |
| C1—C6—H6 | 119.6 | H10A—C10—H10B | 108.5 |
| N1—C7—C1 | 122.7 (4) | ||
| C6—C1—C2—O1 | 180.0 | C4—C5—C6—C1 | 0.0 |
| C7—C1—C2—O1 | 0.0 | Cl1—C5—C6—C1 | 180.0 |
| C6—C1—C2—C3 | 0.0 | C2—C1—C6—C5 | 0.0 |
| C7—C1—C2—C3 | 180.0 | C7—C1—C6—C5 | 180.0 |
| O1—C2—C3—C4 | 180.0 | C8—N1—C7—C1 | 180.0 |
| C1—C2—C3—C4 | 0.0 | C6—C1—C7—N1 | 180.0 |
| O1—C2—C3—Br1 | 0.0 | C2—C1—C7—N1 | 0.000 (1) |
| C1—C2—C3—Br1 | 180.0 | C7—N1—C8—C9 | −124.7 (3) |
| C2—C3—C4—C5 | 0.0 | C7—N1—C8—C9i | 124.7 (3) |
| Br1—C3—C4—C5 | 180.0 | N1—C8—C9—C10 | −81.8 (4) |
| C3—C4—C5—C6 | 0.0 | C9i—C8—C9—C10 | 33.7 (5) |
| C3—C4—C5—Cl1 | 180.0 | C8—C9—C10—C10i | −21.6 (3) |
| H··· | ||||
| O1—H1···N1 | 0.89 (6) | 1.71 (6) | 2.577 (5) | 162 (5) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O1—H1⋯N1 | 0.89 (6) | 1.71 (6) | 2.577 (5) | 162 (5) |