Literature DB >> 21578219

2-Bromo-4-chloro-6-(cyclo-pentyl-imino-meth-yl)phenol.

Yu-Mei Hao1.   

Abstract

All atoms of the title mol-ecule, C(12)H(13)BrClNO, except the C and H atoms of the cyclo-pentane methyl-ene groups lie on a crystallographic mirror plane. The cyclo-pentane ring adopts an envelope conformation and an intra-molecular O-H⋯N hydrogen bond is observed. In the crystal, mol-ecules are stacked along the b axis by π-π inter-actions [centroid-centroid distance = 3.6424 (11) Å].

Entities:  

Year:  2009        PMID: 21578219      PMCID: PMC2971220          DOI: 10.1107/S1600536809039142

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the pharmaceutical and medicinal activity of Schiff bases, see: Dao et al. (2000 ▶); Sriram et al. (2006 ▶); Karthikeyan et al. (2006 ▶). For the coordination chemistry of Schiff bases, see: Ali et al. (2008 ▶); Kargar et al. (2009 ▶); Yeap et al. (2009 ▶). For the crystal structures of Schiff base compounds, see: Fun et al. (2009 ▶); Nadeem et al. (2009 ▶); Eltayeb et al. (2008 ▶). For bond-length data, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C12H13BrClNO M = 302.59 Orthorhombic, a = 12.142 (2) Å b = 6.8610 (14) Å c = 15.077 (3) Å V = 1256.0 (4) Å3 Z = 4 Mo Kα radiation μ = 3.46 mm−1 T = 298 K 0.20 × 0.20 × 0.18 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.544, T max = 0.574 10340 measured reflections 1488 independent reflections 1132 reflections with I > 2σ(I) R int = 0.040

Refinement

R[F 2 > 2σ(F 2)] = 0.044 wR(F 2) = 0.122 S = 1.08 1488 reflections 93 parameters 6 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.40 e Å−3 Δρmin = −0.89 e Å−3 Data collection: SMART (Bruker, 2002 ▶); cell refinement: SAINT (Bruker, 2002 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809039142/ci2924sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809039142/ci2924Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H13BrClNOF(000) = 608
Mr = 302.59Dx = 1.600 Mg m3
Orthorhombic, PnmaMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ac 2nCell parameters from 2255 reflections
a = 12.142 (2) Åθ = 2.6–24.5°
b = 6.8610 (14) ŵ = 3.46 mm1
c = 15.077 (3) ÅT = 298 K
V = 1256.0 (4) Å3Block, yellow
Z = 40.20 × 0.20 × 0.18 mm
Bruker SMART CCD area-detector diffractometer1488 independent reflections
Radiation source: fine-focus sealed tube1132 reflections with I > 2σ(I)
graphiteRint = 0.040
ω scansθmax = 27.5°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −15→15
Tmin = 0.544, Tmax = 0.574k = −8→8
10340 measured reflectionsl = −19→19
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.044Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.122H atoms treated by a mixture of independent and constrained refinement
S = 1.08w = 1/[σ2(Fo2) + (0.0628P)2 + 0.5702P] where P = (Fo2 + 2Fc2)/3
1488 reflections(Δ/σ)max = 0.001
93 parametersΔρmax = 0.40 e Å3
6 restraintsΔρmin = −0.89 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Br1−0.24144 (4)0.25000.43777 (4)0.0689 (3)
Cl10.17429 (13)0.25000.29606 (9)0.0784 (5)
O1−0.1127 (2)0.25000.60853 (19)0.0495 (7)
H1−0.063 (5)0.25000.652 (4)0.074*
N10.0610 (3)0.25000.7067 (2)0.0529 (9)
C10.0712 (3)0.25000.5489 (3)0.0411 (9)
C2−0.0460 (3)0.25000.5392 (3)0.0401 (9)
C3−0.0878 (4)0.25000.4537 (3)0.0428 (9)
C4−0.0210 (4)0.25000.3801 (3)0.0510 (11)
H4−0.05170.25000.32350.061*
C50.0921 (4)0.25000.3908 (3)0.0515 (11)
C60.1374 (4)0.25000.4740 (3)0.0498 (10)
H60.21360.25000.48040.060*
C70.1190 (4)0.25000.6365 (3)0.0506 (10)
H70.19530.25000.64180.061*
C80.1145 (4)0.25000.7942 (3)0.0627 (14)
H80.19500.25000.78930.075*
C90.0723 (4)0.0775 (6)0.8482 (3)0.0887 (14)
H9A0.0620−0.03590.81070.106*
H9B0.12370.04470.89520.106*
C10−0.0323 (5)0.1421 (10)0.8850 (4)0.133 (2)
H10A−0.04090.09340.94500.159*
H10B−0.09280.09340.84930.159*
U11U22U33U12U13U23
Br10.0544 (3)0.0935 (5)0.0588 (4)0.000−0.0150 (2)0.000
Cl10.0888 (10)0.0947 (11)0.0517 (7)0.0000.0307 (7)0.000
O10.0437 (16)0.0639 (19)0.0409 (16)0.0000.0048 (13)0.000
N10.048 (2)0.072 (3)0.0388 (19)0.000−0.0052 (16)0.000
C10.041 (2)0.040 (2)0.042 (2)0.000−0.0002 (16)0.000
C20.049 (2)0.032 (2)0.039 (2)0.0000.0013 (17)0.000
C30.051 (2)0.035 (2)0.042 (2)0.000−0.0035 (18)0.000
C40.075 (3)0.043 (2)0.036 (2)0.0000.001 (2)0.000
C50.063 (3)0.049 (3)0.042 (2)0.0000.015 (2)0.000
C60.046 (2)0.049 (2)0.054 (3)0.0000.012 (2)0.000
C70.041 (2)0.061 (3)0.051 (2)0.000−0.0026 (19)0.000
C80.043 (2)0.100 (4)0.046 (2)0.000−0.010 (2)0.000
C90.134 (4)0.076 (3)0.057 (2)0.008 (3)−0.034 (2)0.007 (2)
C100.108 (4)0.180 (6)0.110 (4)−0.023 (4)0.015 (3)0.040 (4)
Br1—C31.881 (5)C5—C61.370 (6)
Cl1—C51.743 (4)C6—H60.93
O1—C21.322 (5)C7—H70.93
O1—H10.89 (6)C8—C91.526 (5)
N1—C71.271 (6)C8—C9i1.526 (5)
N1—C81.470 (5)C8—H80.98
C1—C61.385 (6)C9—C101.455 (7)
C1—C21.430 (6)C9—H9A0.97
C1—C71.443 (6)C9—H9B0.97
C2—C31.386 (6)C10—C10i1.480 (14)
C3—C41.374 (6)C10—H10A0.97
C4—C51.383 (7)C10—H10B0.97
C4—H40.93
C2—O1—H199 (4)N1—C7—H7118.7
C7—N1—C8120.1 (4)C1—C7—H7118.7
C6—C1—C2119.6 (4)N1—C8—C9109.3 (3)
C6—C1—C7120.8 (4)N1—C8—C9i109.3 (3)
C2—C1—C7119.5 (4)C9—C8—C9i101.7 (5)
O1—C2—C3120.7 (4)N1—C8—H8112.0
O1—C2—C1121.9 (4)C9—C8—H8112.0
C3—C2—C1117.3 (4)C9i—C8—H8112.0
C4—C3—C2122.3 (4)C10—C9—C8105.1 (4)
C4—C3—Br1118.9 (3)C10—C9—H9A110.7
C2—C3—Br1118.8 (3)C8—C9—H9A110.7
C3—C4—C5119.4 (4)C10—C9—H9B110.7
C3—C4—H4120.3C8—C9—H9B110.7
C5—C4—H4120.3H9A—C9—H9B108.8
C6—C5—C4120.4 (4)C9—C10—C10i107.7 (3)
C6—C5—Cl1121.4 (4)C9—C10—H10A110.2
C4—C5—Cl1118.2 (3)C10i—C10—H10A110.2
C5—C6—C1120.8 (4)C9—C10—H10B110.2
C5—C6—H6119.6C10i—C10—H10B110.2
C1—C6—H6119.6H10A—C10—H10B108.5
N1—C7—C1122.7 (4)
C6—C1—C2—O1180.0C4—C5—C6—C10.0
C7—C1—C2—O10.0Cl1—C5—C6—C1180.0
C6—C1—C2—C30.0C2—C1—C6—C50.0
C7—C1—C2—C3180.0C7—C1—C6—C5180.0
O1—C2—C3—C4180.0C8—N1—C7—C1180.0
C1—C2—C3—C40.0C6—C1—C7—N1180.0
O1—C2—C3—Br10.0C2—C1—C7—N10.000 (1)
C1—C2—C3—Br1180.0C7—N1—C8—C9−124.7 (3)
C2—C3—C4—C50.0C7—N1—C8—C9i124.7 (3)
Br1—C3—C4—C5180.0N1—C8—C9—C10−81.8 (4)
C3—C4—C5—C60.0C9i—C8—C9—C1033.7 (5)
C3—C4—C5—Cl1180.0C8—C9—C10—C10i−21.6 (3)
D—H···AD—HH···AD···AD—H···A
O1—H1···N10.89 (6)1.71 (6)2.577 (5)162 (5)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1⋯N10.89 (6)1.71 (6)2.577 (5)162 (5)
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