| Literature DB >> 21578165 |
Eleonora Freire1, Daniel R Vega.
Abstract
In the title complex, [Zn(C(5)H(9)NO(7)P(2))(2)(H(2)O)]·2H(2)O, the zinc atom is coordinated by two zoledronate anions [zoledronate = (2-(1-imidazole)-1-hydr-oxy-1,1'-ethyl-idenediphophonate)] and one water mol-ecule. The coordination number is 5. There is one half-mol-ecule in the asymmetric unit, the zinc atom being located on a twofold rotation axis passing through the metal centre and the coordinating water O atom. The anion exists as a zwitterion with an overall charge of -1; the protonated nitro-gen in the ring has a positive charge and the two phospho-nates groups each have a single negative charge. Inter-molecular O-H⋯O hydrogen bonds link the mol-ecules. An N-H⋯O inter-action is also present.Entities:
Year: 2009 PMID: 21578165 PMCID: PMC2971399 DOI: 10.1107/S160053680904286X
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [Zn(C5H9N2O7P2)2(H2O)]·2H2O | |
| Monoclinic, | Mo |
| Hall symbol: -C 2yc | Cell parameters from 42 reflections |
| θ = 8–25° | |
| µ = 1.48 mm−1 | |
| β = 95.09 (3)° | Prism, colorless |
| 0.20 × 0.18 × 0.09 mm | |
| Rigaku AFC6 diffractometer | 1528 reflections with |
| Radiation source: fine-focus sealed tube | |
| graphite | θmax = 26.0°, θmin = 2.2° |
| ω/2θ scans | |
| Absorption correction: ψ scan (North | |
| 2847 measured reflections | 3 standard reflections every 150 reflections |
| 2208 independent reflections | intensity decay: <3% |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 2208 reflections | (Δ/σ)max = 0.001 |
| 167 parameters | Δρmax = 0.35 e Å−3 |
| 0 restraints | Δρmin = −0.87 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Zn1 | 0.5000 | 0.50532 (5) | 0.7500 | 0.02015 (15) | |
| P1 | 0.64482 (6) | 0.41327 (8) | 0.61862 (4) | 0.01916 (19) | |
| P2 | 0.76934 (6) | 0.48891 (8) | 0.75923 (4) | 0.01749 (19) | |
| O1 | 0.71512 (19) | 0.6590 (2) | 0.64590 (11) | 0.0237 (5) | |
| H1 | 0.7154 | 0.7093 | 0.6806 | 0.043 (12)* | |
| O11 | 0.54208 (18) | 0.4259 (3) | 0.65807 (12) | 0.0299 (5) | |
| O12 | 0.6205 (2) | 0.4826 (2) | 0.54319 (13) | 0.0288 (5) | |
| H12 | 0.6271 | 0.4369 | 0.5075 | 0.050 (14)* | |
| O13 | 0.68721 (19) | 0.2707 (2) | 0.61059 (12) | 0.0277 (5) | |
| O21 | 0.66152 (17) | 0.5108 (2) | 0.79201 (11) | 0.0253 (5) | |
| O22 | 0.85809 (18) | 0.5945 (2) | 0.79009 (12) | 0.0269 (5) | |
| H22 | 0.8339 | 0.6491 | 0.8177 | 0.051 (14)* | |
| O23 | 0.81904 (19) | 0.3498 (2) | 0.76479 (12) | 0.0280 (5) | |
| O1W | 0.5000 | 0.7080 (4) | 0.7500 | 0.0727 (17) | |
| H1W | 0.5565 | 0.7530 | 0.7470 | 0.109* | |
| O2W | 0.6191 (2) | 0.3463 (3) | 0.42704 (13) | 0.0394 (6) | |
| H2WA | 0.5899 | 0.3910 | 0.3937 | 0.059* | |
| H2WB | 0.6790 | 0.3124 | 0.4196 | 0.059* | |
| N1 | 0.8788 (2) | 0.5706 (3) | 0.56618 (13) | 0.0218 (5) | |
| N2 | 0.8895 (2) | 0.7275 (3) | 0.48801 (15) | 0.0328 (7) | |
| H2 | 0.8972 | 0.8060 | 0.4691 | 0.039* | |
| C1 | 0.7536 (2) | 0.5248 (3) | 0.66243 (16) | 0.0183 (6) | |
| C2 | 0.8707 (2) | 0.5064 (3) | 0.63530 (16) | 0.0216 (6) | |
| H2A | 0.9262 | 0.5453 | 0.6698 | 0.026* | |
| H2B | 0.8865 | 0.4103 | 0.6315 | 0.026* | |
| C3 | 0.8930 (3) | 0.7035 (3) | 0.55705 (18) | 0.0278 (7) | |
| H3 | 0.9034 | 0.7680 | 0.5931 | 0.033* | |
| C4 | 0.8718 (3) | 0.6092 (4) | 0.45095 (19) | 0.0351 (8) | |
| H4 | 0.8657 | 0.5991 | 0.4017 | 0.042* | |
| C5 | 0.8649 (3) | 0.5096 (4) | 0.49990 (17) | 0.0282 (7) | |
| H5 | 0.8530 | 0.4178 | 0.4907 | 0.034* |
| Zn1 | 0.0189 (2) | 0.0212 (3) | 0.0206 (3) | 0.000 | 0.00281 (18) | 0.000 |
| P1 | 0.0201 (4) | 0.0188 (4) | 0.0187 (4) | −0.0007 (3) | 0.0023 (3) | −0.0026 (3) |
| P2 | 0.0181 (4) | 0.0171 (4) | 0.0172 (4) | 0.0010 (3) | 0.0010 (3) | 0.0012 (3) |
| O1 | 0.0348 (12) | 0.0148 (10) | 0.0211 (11) | 0.0063 (9) | −0.0003 (9) | 0.0005 (9) |
| O11 | 0.0207 (11) | 0.0397 (14) | 0.0304 (13) | −0.0072 (10) | 0.0080 (9) | −0.0142 (11) |
| O12 | 0.0363 (13) | 0.0275 (12) | 0.0217 (11) | 0.0036 (10) | −0.0033 (10) | −0.0023 (10) |
| O13 | 0.0378 (13) | 0.0175 (11) | 0.0282 (11) | 0.0015 (10) | 0.0044 (10) | −0.0035 (10) |
| O21 | 0.0190 (10) | 0.0362 (13) | 0.0208 (11) | 0.0021 (9) | 0.0029 (8) | −0.0011 (10) |
| O22 | 0.0231 (11) | 0.0291 (13) | 0.0284 (12) | −0.0052 (9) | 0.0019 (9) | −0.0081 (11) |
| O23 | 0.0360 (13) | 0.0193 (11) | 0.0296 (12) | 0.0064 (9) | 0.0072 (10) | 0.0062 (9) |
| O1W | 0.025 (2) | 0.0195 (19) | 0.177 (6) | 0.000 | 0.027 (3) | 0.000 |
| O2W | 0.0535 (17) | 0.0414 (15) | 0.0233 (12) | 0.0094 (13) | 0.0041 (11) | −0.0019 (11) |
| N1 | 0.0212 (12) | 0.0244 (13) | 0.0203 (13) | −0.0008 (10) | 0.0051 (10) | −0.0006 (12) |
| N2 | 0.0363 (16) | 0.0302 (15) | 0.0324 (15) | −0.0009 (12) | 0.0062 (13) | 0.0132 (14) |
| C1 | 0.0207 (14) | 0.0144 (13) | 0.0197 (14) | 0.0035 (11) | 0.0020 (11) | 0.0013 (11) |
| C2 | 0.0193 (14) | 0.0239 (16) | 0.0217 (15) | −0.0002 (12) | 0.0025 (12) | 0.0034 (13) |
| C3 | 0.0288 (17) | 0.0252 (16) | 0.0304 (18) | −0.0040 (13) | 0.0073 (13) | 0.0004 (14) |
| C4 | 0.0333 (19) | 0.049 (2) | 0.0230 (17) | 0.0047 (16) | 0.0012 (14) | 0.0041 (17) |
| C5 | 0.0291 (17) | 0.0322 (18) | 0.0237 (16) | −0.0001 (14) | 0.0044 (13) | −0.0070 (15) |
| Zn1—O1W | 1.999 (4) | O1W—H1W | 0.8200 |
| Zn1—O11 | 2.006 (2) | O2W—H2WA | 0.8200 |
| Zn1—O11i | 2.006 (2) | O2W—H2WB | 0.8200 |
| Zn1—O21i | 2.041 (2) | N1—C3 | 1.335 (4) |
| Zn1—O21 | 2.041 (2) | N1—C5 | 1.382 (4) |
| P1—O13 | 1.508 (2) | N1—C2 | 1.458 (4) |
| P1—O11 | 1.508 (2) | N2—C3 | 1.318 (4) |
| P1—O12 | 1.580 (2) | N2—C4 | 1.366 (5) |
| P1—C1 | 1.851 (3) | N2—H2 | 0.8600 |
| P2—O23 | 1.497 (2) | C1—C2 | 1.558 (4) |
| P2—O21 | 1.506 (2) | C2—H2A | 0.9700 |
| P2—O22 | 1.569 (2) | C2—H2B | 0.9700 |
| P2—C1 | 1.850 (3) | C3—H3 | 0.9300 |
| O1—C1 | 1.427 (3) | C4—C5 | 1.355 (5) |
| O1—H1 | 0.8200 | C4—H4 | 0.9300 |
| O12—H12 | 0.8200 | C5—H5 | 0.9300 |
| O22—H22 | 0.8200 | ||
| O1W—Zn1—O11 | 112.97 (8) | H2WA—O2W—H2WB | 114.6 |
| O1W—Zn1—O11i | 112.97 (7) | C3—N1—C5 | 108.5 (3) |
| O11—Zn1—O11i | 134.06 (15) | C3—N1—C2 | 124.1 (3) |
| O1W—Zn1—O21i | 88.48 (7) | C5—N1—C2 | 127.2 (3) |
| O11—Zn1—O21i | 89.03 (9) | C3—N2—C4 | 109.9 (3) |
| O11i—Zn1—O21i | 92.16 (9) | C3—N2—H2 | 125.0 |
| O1W—Zn1—O21 | 88.48 (7) | C4—N2—H2 | 125.0 |
| O11—Zn1—O21 | 92.16 (9) | O1—C1—C2 | 108.9 (2) |
| O11i—Zn1—O21 | 89.03 (9) | O1—C1—P2 | 113.3 (2) |
| O21i—Zn1—O21 | 176.96 (14) | C2—C1—P2 | 106.45 (19) |
| O13—P1—O11 | 115.37 (14) | O1—C1—P1 | 104.41 (18) |
| O13—P1—O12 | 110.54 (13) | C2—C1—P1 | 114.5 (2) |
| O11—P1—O12 | 108.12 (14) | P2—C1—P1 | 109.42 (15) |
| O13—P1—C1 | 111.36 (13) | N1—C2—C1 | 112.1 (2) |
| O11—P1—C1 | 108.35 (13) | N1—C2—H2A | 109.2 |
| O12—P1—C1 | 102.23 (13) | C1—C2—H2A | 109.2 |
| O23—P2—O21 | 117.33 (14) | N1—C2—H2B | 109.2 |
| O23—P2—O22 | 108.95 (14) | C1—C2—H2B | 109.2 |
| O21—P2—O22 | 109.95 (13) | H2A—C2—H2B | 107.9 |
| O23—P2—C1 | 104.47 (13) | N2—C3—N1 | 108.1 (3) |
| O21—P2—C1 | 111.03 (13) | N2—C3—H3 | 126.0 |
| O22—P2—C1 | 104.20 (13) | N1—C3—H3 | 126.0 |
| C1—O1—H1 | 114.1 | C5—C4—N2 | 106.7 (3) |
| P1—O11—Zn1 | 137.76 (14) | C5—C4—H4 | 126.6 |
| P1—O12—H12 | 118.4 | N2—C4—H4 | 126.6 |
| P2—O21—Zn1 | 132.07 (13) | C4—C5—N1 | 106.8 (3) |
| P2—O22—H22 | 113.5 | C4—C5—H5 | 126.6 |
| Zn1—O1W—H1W | 122.7 | N1—C5—H5 | 126.6 |
| O13—P1—O11—Zn1 | 114.0 (2) | O13—P1—C1—O1 | 162.06 (18) |
| O12—P1—O11—Zn1 | −121.6 (2) | O11—P1—C1—O1 | −70.0 (2) |
| C1—P1—O11—Zn1 | −11.6 (3) | O12—P1—C1—O1 | 44.0 (2) |
| O1W—Zn1—O11—P1 | 70.5 (2) | O13—P1—C1—C2 | 43.0 (2) |
| O11i—Zn1—O11—P1 | −109.5 (2) | O11—P1—C1—C2 | 170.9 (2) |
| O21i—Zn1—O11—P1 | 158.5 (2) | O12—P1—C1—C2 | −75.0 (2) |
| O21—Zn1—O11—P1 | −18.7 (2) | O13—P1—C1—P2 | −76.38 (17) |
| O23—P2—O21—Zn1 | −95.2 (2) | O11—P1—C1—P2 | 51.53 (18) |
| O22—P2—O21—Zn1 | 139.62 (18) | O12—P1—C1—P2 | 165.57 (14) |
| C1—P2—O21—Zn1 | 24.8 (2) | C3—N1—C2—C1 | 78.5 (4) |
| O1W—Zn1—O21—P2 | −102.54 (19) | C5—N1—C2—C1 | −96.1 (3) |
| O11—Zn1—O21—P2 | 10.4 (2) | O1—C1—C2—N1 | −39.8 (3) |
| O11i—Zn1—O21—P2 | 144.5 (2) | P2—C1—C2—N1 | −162.3 (2) |
| O23—P2—C1—O1 | −175.2 (2) | P1—C1—C2—N1 | 76.6 (3) |
| O21—P2—C1—O1 | 57.4 (2) | C4—N2—C3—N1 | 0.6 (4) |
| O22—P2—C1—O1 | −60.9 (2) | C5—N1—C3—N2 | −0.6 (4) |
| O23—P2—C1—C2 | −55.5 (2) | C2—N1—C3—N2 | −176.1 (3) |
| O21—P2—C1—C2 | 177.09 (19) | C3—N2—C4—C5 | −0.3 (4) |
| O22—P2—C1—C2 | 58.8 (2) | N2—C4—C5—N1 | 0.0 (4) |
| O23—P2—C1—P1 | 68.72 (17) | C3—N1—C5—C4 | 0.4 (4) |
| O21—P2—C1—P1 | −58.67 (18) | C2—N1—C5—C4 | 175.7 (3) |
| O22—P2—C1—P1 | −176.99 (13) |
| H··· | ||||
| O12—H12···O2W | 0.82 | 1.75 | 2.566 (3) | 171 |
| O22—H22···O13ii | 0.82 | 1.84 | 2.645 (3) | 167 |
| O2W—H2WA···O21iii | 0.82 | 2.38 | 2.990 (3) | 132 |
| O2W—H2WB···O13iv | 0.82 | 1.94 | 2.758 (4) | 173 |
| N2—H2···O12v | 0.86 | 2.11 | 2.917 (4) | 157 |
| O1W—H1W···O23ii | 0.82 | 1.81 | 2.632 (3) | 177 |
| O1—H1···O23ii | 0.82 | 1.80 | 2.581 (3) | 160 |
| Zn1—O1 | 1.999 (4) |
| Zn1—O11 | 2.006 (2) |
| Zn1—O21 | 2.041 (2) |
| O1 | 112.97 (8) |
| O11—Zn1—O11i | 134.06 (15) |
| O11—Zn1—O21i | 89.03 (9) |
| O1 | 88.48 (7) |
| O11—Zn1—O21 | 92.16 (9) |
| O21i—Zn1—O21 | 176.96 (14) |
Symmetry code: (i) .
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O12—H12⋯O2 | 0.82 | 1.75 | 2.566 (3) | 171 |
| O22—H22⋯O13ii | 0.82 | 1.84 | 2.645 (3) | 167 |
| O2 | 0.82 | 2.38 | 2.990 (3) | 132 |
| O2 | 0.82 | 1.94 | 2.758 (4) | 173 |
| N2—H2⋯O12v | 0.86 | 2.11 | 2.917 (4) | 157 |
| O1 | 0.82 | 1.81 | 2.632 (3) | 177 |
| O1—H1⋯O23ii | 0.82 | 1.80 | 2.581 (3) | 160 |
Symmetry codes: (ii) ; (iii) ; (iv) ; (v) .